Kif2a (kinesin family member 2A) - Rat Genome Database

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Gene: Kif2a (kinesin family member 2A) Rattus norvegicus
Analyze
Symbol: Kif2a
Name: kinesin family member 2A
RGD ID: 70974
Description: Enables protein kinase binding activity. Involved in anterograde axonal transport. Predicted to be located in several cellular components, including microtubule cytoskeleton; nuclear lumen; and sperm principal piece. Predicted to be part of centriolar subdistal appendage and kinesin complex. Predicted to be active in GABA-ergic synapse; cytoplasm; and microtubule cytoskeleton. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 3. Orthologous to human KIF2A (kinesin family member 2A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Kif2; kinesin heavy chain family, member 2; kinesin heavy chain member 2; kinesin heavy chain member 2A; kinesin-2; kinesin-like protein KIF2A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8240,101,548 - 40,164,780 (-)NCBIGRCr8
mRatBN7.2238,367,998 - 38,431,237 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl238,367,998 - 38,431,508 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx245,491,535 - 45,554,753 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0243,550,214 - 43,613,432 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0238,397,498 - 38,460,714 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0238,145,507 - 38,208,765 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl238,147,601 - 38,208,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0257,240,240 - 57,302,984 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4238,079,564 - 38,143,398 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1238,002,008 - 38,013,924 (-)NCBI
Celera234,235,756 - 34,298,829 (-)NCBICelera
Cytogenetic Map2q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
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Original Reference(s)
Kif2aRatcomplex cortical dysplasia with other brain malformations 3  ISOKIF2A (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
Kif2aRatgenetic disease  ISOKIF2A (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Kif2aRatmicrocephaly  ISOKIF2A (Homo sapiens)8554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868 and PMID:28492532
Kif2aRatNEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, ARTHROGRYPOSIS, AND STRUCTURAL BRAIN ANOMALIES  ISOKIF2A (Homo sapiens)8554872ClinVar Annotator: match by term: Abnormality of the cerebrumClinVar 
Kif2aRatNeurodevelopmental Disorders  ISOKIF2A (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Object Symbol
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Original Reference(s)
Kif2aRatcomplex cortical dysplasia with other brain malformations  ISOKIF2A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23603762
Kif2aRatmicrocephaly  ISOKIF2A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23603762
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Original Reference(s)
Kif2aRatcomplex cortical dysplasia with other brain malformations 3  ISOKIF2A (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Kif2aRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOKif2a (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of KIF2A mRNACTDPMID:19770486
Kif2aRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of KIF2A mRNACTDPMID:33387578 and PMID:34747641
Kif2aRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOKif2a (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of KIF2A mRNACTDPMID:21570461
Kif2aRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOKif2a (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to KIF2A promoter]CTDPMID:19654925
Kif2aRat2-methylcholine affects expressionISOKIF2A (Homo sapiens)6480464beta-methylcholine affects the expression of KIF2A mRNACTDPMID:21179406
Kif2aRat4-hydroxyphenyl retinamide decreases expressionISOKif2a (Mus musculus)6480464Fenretinide results in decreased expression of KIF2A mRNACTDPMID:28973697
Kif2aRatacrolein multiple interactionsISOKIF2A (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of KIF2A mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of KIF2A mRNACTDPMID:32699268
Kif2aRatacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of KIF2A mRNACTDPMID:28959563
Kif2aRatacrylamide decreases expressionISOKif2a (Mus musculus)6480464Acrylamide results in decreased expression of KIF2A mRNACTDPMID:30807115
Kif2aRataflatoxin B1 affects expressionISOKIF2A (Homo sapiens)6480464Aflatoxin B1 affects the expression of KIF2A proteinCTDPMID:20106945
Kif2aRataflatoxin B1 increases expressionISOKIF2A (Homo sapiens)6480464Aflatoxin B1 results in increased expression of KIF2A mRNACTDPMID:22100608 and PMID:27153756
Kif2aRatall-trans-retinoic acid decreases expressionISOKIF2A (Homo sapiens)6480464Tretinoin results in decreased expression of KIF2A mRNACTDPMID:15498508 and PMID:33167477
Kif2aRatalpha-pinene multiple interactionsISOKIF2A (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of KIF2A mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of KIF2A mRNACTDPMID:32699268
Kif2aRatammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of KIF2A mRNACTDPMID:16483693
Kif2aRataristolochic acid A decreases expressionISOKIF2A (Homo sapiens)6480464aristolochic acid I results in decreased expression of KIF2A mRNACTDPMID:33212167
Kif2aRatarsenite(3-) increases expressionISOKif2a (Mus musculus)6480464arsenite results in increased expression of KIF2A proteinCTDPMID:37955338
Kif2aRatbenzo[a]pyrene decreases methylationISOKIF2A (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of KIF2A 3' UTRCTDPMID:27901495
Kif2aRatbenzo[a]pyrene increases expressionISOKIF2A (Homo sapiens)6480464Benzo(a)pyrene results in increased expression of KIF2A mRNACTDPMID:32234424
Kif2aRatbenzo[a]pyrene increases methylationISOKIF2A (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of KIF2A promoterCTDPMID:27901495
Kif2aRatbenzo[a]pyrene diol epoxide I decreases expressionISOKIF2A (Homo sapiens)64804647 more ...CTDPMID:19150397 and PMID:20382639

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Biological Process
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Original Reference(s)
Kif2aRatanterograde axonal transport involved_inIEP 405650344PMID:7535303SynGO 
Kif2aRatanterograde axonal transport involved_inIDA 405650344PMID:7535303SynGO 
Kif2aRatcell differentiation involved_inIEAUniProtKB-KW:KW-02211600115GO_REF:0000043UniProtGO_REF:0000043
Kif2aRatcell division involved_inIEAUniProtKB-KW:KW-01321600115GO_REF:0000043UniProtGO_REF:0000043
Kif2aRatdendritic transport involved_inISOKif2a (Mus musculus)1624291 PMID:36733270RGDPMID:36733270
Kif2aRatmicrotubule cytoskeleton organization involved_inISOKIF2A (Homo sapiens)1624291UniProtKB:Q6IQ55 and PMID:26323690RGDPMID:26323690
Kif2aRatmicrotubule cytoskeleton organization involved_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatmicrotubule-based movement involved_inIEAInterPro:IPR001752 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Kif2aRatmicrotubule-based movement involved_inIBAFB:FBgn0000352 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kif2aRatmitotic spindle assembly involved_inISOKIF2A (Homo sapiens)1624291 PMID:15843429RGDPMID:15843429
Kif2aRatmitotic spindle assembly involved_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatmitotic spindle assembly involved_inISSUniProtKB:O001391600115GO_REF:0000024UniProtGO_REF:0000024
Kif2aRatmitotic spindle organization involved_inISOKIF2A (Homo sapiens)1624291 PMID:18411309RGDPMID:18411309
Kif2aRatmitotic spindle organization involved_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatmitotic spindle organization involved_inISSUniProtKB:O001391600115GO_REF:0000024UniProtGO_REF:0000024
Kif2aRatnervous system development involved_inIEAUniProtKB-KW:KW-05241600115GO_REF:0000043UniProtGO_REF:0000043
Kif2aRatregulation of cell migration involved_inISOKIF2A (Homo sapiens)1624291UniProtKB:Q6IQ55 and PMID:26323690RGDPMID:26323690
Kif2aRatregulation of cell migration involved_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Kif2aRataxon cytoplasm located_inIEAGO:00080891600115GO_REF:0000108GOCGO_REF:0000108
Kif2aRatcentriolar subdistal appendage part_ofISOKIF2A (Homo sapiens)1624291 PMID:23213374RGDPMID:23213374
Kif2aRatcentriolar subdistal appendage part_ofIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatcentriole located_inISOKIF2A (Homo sapiens)1624291 PMID:23213374RGDPMID:23213374
Kif2aRatcentriole located_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatcentrosome located_inIEAUniProtKB-SubCell:SL-00481600115GO_REF:0000044UniProtGO_REF:0000044
Kif2aRatcentrosome located_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatcentrosome located_inISOKIF2A (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Kif2aRatcentrosome is_active_inIBAFB:FBgn0030268 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kif2aRatcentrosome located_inISOKIF2A (Homo sapiens)1624291 PMID:21399614RGDPMID:21399614
Kif2aRatciliary basal body located_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatciliary basal body located_inISOKIF2A (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Kif2aRatcytoplasm located_inISOKIF2A (Homo sapiens)1624291 PMID:26323690RGDPMID:26323690
Kif2aRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Kif2aRatcytoplasm located_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Kif2aRatcytoplasm is_active_inIBAFB:FBgn0001308 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kif2aRatcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
Kif2aRatcytosol located_inIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatcytosol located_inISOKIF2A (Homo sapiens) more ...1624291 RGDGO_REF:0000052
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Molecular Function
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Original Reference(s)
Kif2aRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Kif2aRatATP binding enablesIEAInterPro:IPR001752 and InterPro:IPR0198211600115GO_REF:0000002InterProGO_REF:0000002
Kif2aRatATP binding enablesIEAUniRule:UR0004010071600115GO_REF:0000104UniProtGO_REF:0000104
Kif2aRatATP hydrolysis activity enablesIBAMGI:1098226 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kif2aRatcytoskeletal motor activity enablesIEAUniRule:UR0004010071600115GO_REF:0000104UniProtGO_REF:0000104
Kif2aRatmicrotubule binding enablesISOKIF2A (Homo sapiens)1624291 PMID:26323690RGDPMID:26323690
Kif2aRatmicrotubule binding enablesIBAFB:FBgn0000352 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kif2aRatmicrotubule binding enablesIEAUniProtKB:O00139 and ensembl:ENSP000003850001600115GO_REF:0000107EnsemblGO_REF:0000107
Kif2aRatmicrotubule binding enablesIEAInterPro:IPR0017521600115GO_REF:0000002InterProGO_REF:0000002
Kif2aRatmicrotubule motor activity enablesIEAInterPro:IPR001752 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Kif2aRatmicrotubule motor activity enablesIBAFB:FBgn0001308 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kif2aRatnucleotide binding enablesIEAUniRule:UR0004010071600115GO_REF:0000104UniProtGO_REF:0000104
Kif2aRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Kif2aRatprotein binding enablesISOKIF2A (Homo sapiens)1624291UniProtKB:Q5SW79 more ...RGDPMID:18411309 more ...
Kif2aRatprotein binding enablesISOKIF2A (Homo sapiens) and UniProtKB:O00139-11624291UniProtKB:P25791-3 more ...RGDPMID:32296183 and PMID:32814053
Kif2aRatprotein serine/threonine kinase binding enablesIPIUniProtKB:Q6IQ5513461759PMID:26323690ARUK-UCL 
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#
Reference Title
Reference Citation
1. Identification of a novel human kinesin-related gene (HK2) by the cDNA differential display technique. Debernardi S, etal., Genomics 1997 May 15;42(1):67-73.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KIF2 is a new microtubule-based anterograde motor that transports membranous organelles distinct from those carried by kinesin heavy chain or KIF3A/B. Noda Y, etal., J Cell Biol. 1995 Apr;129(1):157-67. doi: 10.1083/jcb.129.1.157.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. TTBK2 with EB1/3 regulates microtubule dynamics in migrating cells through KIF2A phosphorylation. Watanabe T, etal., J Cell Biol. 2015 Aug 31;210(5):737-51. doi: 10.1083/jcb.201412075.
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PMID:12477932   PMID:15843429   PMID:17728463   PMID:18411309   PMID:19946888   PMID:21399614   PMID:23213374   PMID:24339785   PMID:29476059   PMID:30053369   PMID:31041455   PMID:31514228  



Kif2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8240,101,548 - 40,164,780 (-)NCBIGRCr8
mRatBN7.2238,367,998 - 38,431,237 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl238,367,998 - 38,431,508 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx245,491,535 - 45,554,753 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0243,550,214 - 43,613,432 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0238,397,498 - 38,460,714 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0238,145,507 - 38,208,765 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl238,147,601 - 38,208,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0257,240,240 - 57,302,984 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4238,079,564 - 38,143,398 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1238,002,008 - 38,013,924 (-)NCBI
Celera234,235,756 - 34,298,829 (-)NCBICelera
Cytogenetic Map2q13NCBI
KIF2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38562,306,206 - 62,391,025 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl562,306,162 - 62,391,025 (+)EnsemblGRCh38hg38GRCh38
GRCh37561,602,033 - 61,686,852 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36561,637,746 - 61,717,967 (+)NCBINCBI36Build 36hg18NCBI36
Build 34561,678,712 - 61,717,967NCBI
Celera558,597,901 - 58,678,136 (+)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef558,558,087 - 58,639,465 (+)NCBIHuRef
CHM1_1561,601,610 - 61,682,674 (+)NCBICHM1_1
T2T-CHM13v2.0563,125,434 - 63,210,585 (+)NCBIT2T-CHM13v2.0
Kif2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913107,095,504 - 107,158,931 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13107,095,504 - 107,158,634 (-)EnsemblGRCm39 Ensembl
GRCm3813106,958,996 - 107,022,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13106,958,996 - 107,022,126 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713107,750,665 - 107,812,194 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613108,081,645 - 108,142,499 (-)NCBIMGSCv36mm8
Celera13111,296,434 - 111,357,980 (-)NCBICelera
Cytogenetic Map13D2.1NCBI
cM Map1358.06NCBI
Kif2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554466,244,547 - 6,279,089 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554466,244,547 - 6,279,080 (-)NCBIChiLan1.0ChiLan1.0
KIF2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2451,526,263 - 51,606,649 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1549,679,897 - 49,760,283 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0551,605,954 - 51,690,921 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1553,251,415 - 53,332,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl553,251,415 - 53,332,218 (-)Ensemblpanpan1.1panPan2
KIF2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1248,642,961 - 48,715,605 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl248,645,380 - 48,714,025 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha245,653,412 - 45,726,282 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0249,120,201 - 49,193,369 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl249,123,873 - 49,194,809 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1246,189,037 - 46,262,137 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0246,976,421 - 47,049,092 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0247,832,428 - 47,905,530 (+)NCBIUU_Cfam_GSD_1.0
Kif2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213197,386,873 - 197,421,209 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364806,324,216 - 6,357,741 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364806,324,214 - 6,357,696 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1641,016,674 - 41,102,545 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11641,016,680 - 41,101,122 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KIF2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1458,486,642 - 58,566,732 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl458,486,723 - 58,565,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660497,016,680 - 7,100,358 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248157,504,977 - 7,585,743 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248157,504,977 - 7,585,762 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Kif2a
96 total Variants

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:67
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000019189, ENSRNOT00000019225
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 37 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat

1 to 10 of 37 rows
RH132232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2238,368,260 - 38,368,452 (+)MAPPERmRatBN7.2
Rnor_6.0238,145,770 - 38,145,961NCBIRnor6.0
Rnor_5.0257,240,503 - 57,240,694UniSTSRnor5.0
RGSC_v3.4238,079,827 - 38,080,018UniSTSRGSC3.4
Celera234,236,019 - 34,236,210UniSTS
RH 3.4 Map2177.2UniSTS
Cytogenetic Map2q14UniSTS
RH139596  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2238,367,968 - 38,368,164 (+)MAPPERmRatBN7.2
Rnor_6.0238,145,478 - 38,145,673NCBIRnor6.0
Rnor_5.0257,240,211 - 57,240,406UniSTSRnor5.0
RGSC_v3.4238,079,535 - 38,079,730UniSTSRGSC3.4
Celera234,235,727 - 34,235,922UniSTS
RH 3.4 Map2177.4UniSTS
Cytogenetic Map2q14UniSTS
RH140326  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2238,369,417 - 38,369,665 (+)MAPPERmRatBN7.2
Rnor_6.0238,146,927 - 38,147,174NCBIRnor6.0
Rnor_5.0257,241,660 - 57,241,907UniSTSRnor5.0
RGSC_v3.4238,080,984 - 38,081,231UniSTSRGSC3.4
Celera234,237,176 - 34,237,423UniSTS
RH 3.4 Map2179.4UniSTS
Cytogenetic Map2q14UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000019189   ⟹   ENSRNOP00000019189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl238,367,998 - 38,431,508 (-)Ensembl
Rnor_6.0 Ensembl238,147,601 - 38,208,719 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093988   ⟹   ENSRNOP00000095843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl238,367,998 - 38,402,893 (-)Ensembl
RefSeq Acc Id: NM_053376   ⟹   NP_445828
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8240,101,548 - 40,164,780 (-)NCBI
mRatBN7.2238,367,998 - 38,431,237 (-)NCBI
Rnor_6.0238,145,507 - 38,208,765 (-)NCBI
Rnor_5.0257,240,240 - 57,302,984 (-)NCBI
Celera234,235,756 - 34,298,829 (-)NCBI
Sequence:
Protein RefSeqs NP_445828 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD39241 (Get FASTA)   NCBI Sequence Viewer  
  AAH91304 (Get FASTA)   NCBI Sequence Viewer  
  EDM10287 (Get FASTA)   NCBI Sequence Viewer  
  EDM10288 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095843
GenBank Protein Q9WV63 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445828   ⟸   NM_053376
- UniProtKB: Q9WV63 (UniProtKB/Swiss-Prot),   Q5BJW1 (UniProtKB/Swiss-Prot),   A6I5H9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019189   ⟸   ENSRNOT00000019189
Ensembl Acc Id: ENSRNOP00000095843   ⟸   ENSRNOT00000093988
Kinesin motor

Name Modeler Protein Id AA Range Protein Structure
AF-Q9WV63-F1-model_v2 AlphaFold Q9WV63 1-705 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-54524 BioCyc
Ensembl Genes ENSRNOG00000014000 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000093988 ENTREZGENE
Gene3D-CATH 3.40.850.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7310909 IMAGE-MGC_LOAD
InterPro KIF2A-like_N UniProtKB/Swiss-Prot
  Kinesin-like_fam UniProtKB/Swiss-Prot
  Kinesin_motor_CS UniProtKB/Swiss-Prot
  Kinesin_motor_dom UniProtKB/Swiss-Prot
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
MGC_CLONE MGC:109252 IMAGE-MGC_LOAD
NCBI Gene 84391 ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN UniProtKB/Swiss-Prot
  KINESIN-RELATED PROTEIN 6 UniProtKB/Swiss-Prot
Pfam KIF2A-like_1st UniProtKB/Swiss-Prot
  Kinesin UniProtKB/Swiss-Prot
PhenoGen Kif2a PhenoGen
PRINTS KINESINHEAVY UniProtKB/Swiss-Prot
PROSITE KINESIN_MOTOR_1 UniProtKB/Swiss-Prot
  KINESIN_MOTOR_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014000 RatGTEx
SMART KISc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I6AU93_RAT UniProtKB/TrEMBL
  A6I5H9 ENTREZGENE, UniProtKB/TrEMBL
  F1M8L1_RAT UniProtKB/TrEMBL
  KIF2A_RAT UniProtKB/Swiss-Prot
  Q5BJW1 ENTREZGENE
  Q9WV63 ENTREZGENE
UniProt Secondary Q5BJW1 UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-22 Kif2a  kinesin family member 2A  Kif2a  kinesin heavy chain member 2A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-29 Kif2a  kinesin heavy chain member 2A  Kif2a  kinesin family member 2A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-18 Kif2a  kinesin family member 2A  Kif2  kinesin heavy chain family, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Kif2  kinesin heavy chain family, member 2    kinesin heavy chain member 2  Name updated 1299863 APPROVED
2002-07-09 Kif2  kinesin heavy chain member 2      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

Note Type Note Reference
gene_function essential for the bipolarity of spindle assembly in cultured non-neuronal human, frog and hamster cells during mitosis 1358126
gene_function in mouse brain, involved in suppression of collateral branch extension during neuronal development, possibly by depolymerizing microtubules at the growth cone edge 1358127