Pdia3 (protein disulfide isomerase family A, member 3) - Rat Genome Database

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Gene: Pdia3 (protein disulfide isomerase family A, member 3) Rattus norvegicus
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Symbol: Pdia3
Name: protein disulfide isomerase family A, member 3
RGD ID: 68430
Description: Enables MHC class I protein binding activity; peptidase activity; and protein-disulfide reductase (glutathione) activity. Involved in several processes, including cellular response to nonylphenol; response to benzene; and response to ischemia. Located in several cellular components, including acrosomal vesicle; apical plasma membrane; and smooth endoplasmic reticulum. Part of TAP complex. Used to study autoimmune hepatitis and irritable bowel syndrome. Biomarker of asphyxia neonatorum; irritable bowel syndrome; liver cirrhosis; post-traumatic stress disorder; and pulmonary hypertension. Human ortholog(s) of this gene implicated in autoimmune hepatitis. Orthologous to human PDIA3 (protein disulfide isomerase family A member 3); PARTICIPATES IN antigen processing and presentation pathway; Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 58 kDa glucose-regulated protein; 58 kDa microsomal protein; disulfide isomerase ER-60; endoplasmic reticulum resident protein 57; endoplasmic reticulum resident protein 60; ER protein 57; ER protein 60; ER-60 protease; ER60; ERp57; ERp60; glucose regulated protein, 58 kDa; Grp58; HIP-70; oxidoreductase ERp57; p58; protein disulfide isomerase associated 3; protein disulfide-isomerase A3; Q-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,841,781 - 128,865,733 (+)NCBIGRCr8
mRatBN7.23108,388,189 - 108,412,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,388,245 - 108,413,236 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,062,478 - 112,086,451 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03120,657,999 - 120,681,970 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03118,318,399 - 118,342,371 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03113,376,983 - 113,400,707 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,376,983 - 113,400,707 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,916,772 - 119,940,826 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,216,414 - 108,240,138 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,117,203 - 108,140,928 (+)NCBI
Celera3107,289,603 - 107,313,229 (+)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
Pdia3Ratasphyxia neonatorum  IEP 9999183protein:increased expression:hippocampus:RGD 
Pdia3Ratautoimmune hepatitis  IDA 9999172 RGD 
Pdia3Ratautoimmune hepatitis  ISOPDIA3 (Homo sapiens)9999172 RGD 
Pdia3RatDehydration  IEP 1642352protein:increased expression:brain:RGD 
Pdia3Ratirritable bowel syndrome  IEP 9999158protein:increased expression:colonic mucosa:RGD 
Pdia3Ratirritable bowel syndrome severityIMP 13838729 RGD 
Pdia3Ratliver cirrhosis severityISOPDIA3 (Homo sapiens)9999176protein:decreased expression:liver:RGD 
Pdia3Ratliver cirrhosis  IEP 9999176protein:decreased expression:liver:RGD 
Pdia3RatMyocardial Reperfusion Injury  IEP 1624250 RGD 
Pdia3Ratpost-traumatic stress disorder  IEP 13782181 RGD 
Pdia3Ratpulmonary hypertension  IEP 9999167protein:increased expression:lung:RGD 
Pdia3Ratscrapie  ISOPdia3 (Mus musculus)9999196protein:increased expression:brain:RGD 
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Original Reference(s)
Pdia3Ratautosomal recessive nonsyndromic deafness 16  ISOPDIA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 16ClinVarPMID:25741868
Pdia3RatBloom syndrome  ISOPDIA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
Pdia3Ratcolorectal cancer  ISOPDIA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
Pdia3RatDeafness-Infertility Syndrome  ISOPDIA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness-infertility syndromeClinVarPMID:25741868
Pdia3Ratintellectual disability  ISOPDIA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:34904718
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Original Reference(s)
Pdia3RatAcute Coronary Syndrome  ISOPDIA3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21751358
Pdia3Ratdisease of cellular proliferation  ISOPDIA3 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:17353921
Pdia3Rathepatocellular carcinoma  ISOPDIA3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21472284
Pdia3RatProstatic Neoplasms  ISOPDIA3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17566973
Pdia3Ratspinocerebellar ataxia type 17  ISOPDIA3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24413982

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Pdia3Rat(-)-epigallocatechin 3-gallate increases expressionISOPDIA3 (Homo sapiens)6480464epigallocatechin gallate results in increased expression of PDIA3 proteinCTDPMID:31195006
Pdia3Rat1,3-dinitrobenzene increases expressionEXP 64804643-dinitrobenzene results in increased expression of PDIA3 mRNACTDPMID:21983209
Pdia3Rat1,3-dinitrobenzene increases metabolic processingEXP 64804643-dinitrobenzene results in increased metabolism of PDIA3 proteinCTDPMID:21402099
Pdia3Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of PDIA3 mRNACTDPMID:17108234
Pdia3Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of PDIA3 proteinCTDPMID:32145629
Pdia3Rat17beta-estradiol decreases expressionISOPdia3 (Mus musculus)6480464Estradiol results in decreased expression of PDIA3 mRNACTDPMID:39298647
Pdia3Rat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one increases expressionISOPDIA3 (Homo sapiens)6480464Metribolone results in increased expression of PDIA3 proteinCTDPMID:17152098
Pdia3Rat17beta-hydroxy-5alpha-androstan-3-one affects expressionEXP 6480464Dihydrotestosterone affects the expression of PDIA3 proteinCTDPMID:19639176
Pdia3Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOPDIA3 (Homo sapiens)6480464Dihydrotestosterone results in increased expression of PDIA3 mRNACTDPMID:29581250
Pdia3Rat17beta-hydroxy-5alpha-androstan-3-one multiple interactionsEXP 6480464[2-hydroxyamino-1-methyl-6-phenylimidazo(4 and 5-b)pyridine co-treated with Dihydrotestosterone] affects the expression of PDIA3 proteinCTDPMID:19639176
Pdia3Rat1H-pyrazole increases expressionISOPdia3 (Mus musculus)6480464pyrazole results in increased expression of PDIA3 mRNACTDPMID:17945193
Pdia3Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOPdia3 (Mus musculus)64804642 more ...CTDPMID:30294300
Pdia3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PDIA3 mRNACTDPMID:16054898
Pdia3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of PDIA3 mRNACTDPMID:34747641
Pdia3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPdia3 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of PDIA3 mRNACTDPMID:33956508
Pdia3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPdia3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PDIA3 mRNACTDPMID:21570461
Pdia3Rat2,4,6-trinitrobenzenesulfonic acid increases expressionISOPdia3 (Mus musculus)6480464Trinitrobenzenesulfonic Acid results in increased expression of PDIA3 mRNACTDPMID:17982090
Pdia3Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether decreases expressionISOPdia3 (Mus musculus)64804642 more ...CTDPMID:18550172
Pdia3Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether decreases expressionEXP 64804642 more ...CTDPMID:19954255
Pdia3Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of PDIA3 mRNACTDPMID:21346803

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Biological Process
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Original Reference(s)
Pdia3Ratadaptive immune response involved_inIEAUniProtKB-KW:KW-10641600115GO_REF:0000043UniProtGO_REF:0000043
Pdia3Ratcellular response to interleukin-7 acts_upstream_of_or_withinISOPdia3 (Mus musculus)1624291 PMID:29581031RGDPMID:29581031
Pdia3Ratcellular response to interleukin-7 acts_upstream_of_or_withinIEAUniProtKB:P27773 and ensembl:ENSMUSP000000286831600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratcellular response to nonylphenol  IEP 9999197 RGD 
Pdia3Ratcellular response to transforming growth factor beta stimulus  IEP 9999173 RGD 
Pdia3Ratcellular response to vitamin D  IDA 9999173 RGD 
Pdia3Ratcircadian rhythm  IEP 9999182 RGD 
Pdia3Ratextrinsic apoptotic signaling pathway acts_upstream_ofISOPdia3 (Mus musculus)1624291 PMID:15858817RGDPMID:15858817
Pdia3Ratextrinsic apoptotic signaling pathway acts_upstream_ofIEAUniProtKB:P27773 and ensembl:ENSMUSP000000286831600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratimmune system process involved_inIEAUniProtKB-KW:KW-03911600115GO_REF:0000043UniProtGO_REF:0000043
Pdia3Ratpeptide antigen assembly with MHC class I protein complex involved_inIEAUniProtKB:P30101 and ensembl:ENSP000003002891600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratpeptide antigen assembly with MHC class I protein complex involved_inISOPDIA3 (Homo sapiens)1624291 PMID:17603487RGDPMID:17603487
Pdia3Ratplatelet aggregation acts_upstream_of_or_withinISOPdia3 (Mus musculus)1624291 PMID:28576878RGDPMID:28576878
Pdia3Ratplatelet aggregation acts_upstream_of_or_withinIEAUniProtKB:P27773 and ensembl:ENSMUSP000000286831600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratpositive regulation of extrinsic apoptotic signaling pathway acts_upstream_of_or_withinISOPdia3 (Mus musculus)1624291 PMID:15858817RGDPMID:15858817
Pdia3Ratpositive regulation of extrinsic apoptotic signaling pathway acts_upstream_of_or_withinIEAUniProtKB:P27773 and ensembl:ENSMUSP000000286831600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratpositive regulation of protein folding  IDA 9999184 RGD 
Pdia3Ratprotein folding involved_inIBAPANTHER:PTN000432607 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pdia3Ratresponse to benzene  IEP 9999177 RGD 
Pdia3Ratresponse to endoplasmic reticulum stress involved_inIBAPANTHER:PTN000432607 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Cellular Component
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Original Reference(s)
Pdia3Ratacrosomal vesicle  IDA 9999140 RGD 
Pdia3Ratapical plasma membrane  IDA 632898 RGD 
Pdia3Ratcell surface  IDA 9999173 RGD 
Pdia3Ratcell surface is_active_inIBAMGI:95834 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pdia3Ratcell surface located_inISOPdia3 (Mus musculus)1624291 PMID:19995400RGDPMID:19995400
Pdia3Ratcell surface located_inIEAUniProtKB:P27773 and ensembl:ENSMUSP000000286831600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratcell surface located_inISOPDIA3 (Homo sapiens)1624291 PMID:19995400RGDPMID:19995400
Pdia3Ratcell surface located_inIEAUniProtKB:P30101 and ensembl:ENSP000003002891600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratendoplasmic reticulum located_inIEAUniProtKB:V9HVY3 and ensembl:ENSP000003002891600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratendoplasmic reticulum located_inIEAUniProtKB:P30101 and ensembl:ENSP000003002891600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratendoplasmic reticulum located_inIEAUniProtKB:P27773 and ensembl:ENSMUSP000000286831600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratendoplasmic reticulum located_inIEAUniProtKB-SubCell:SL-00951600115GO_REF:0000044UniProtGO_REF:0000044
Pdia3Ratendoplasmic reticulum located_inISOPdia3 (Mus musculus)1624291 PMID:9493907RGDPMID:9493907
Pdia3Ratendoplasmic reticulum is_active_inIBAFB:FBgn0286818 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pdia3Ratendoplasmic reticulum located_inISOPDIA3 (Homo sapiens)1624291 PMID:23826168RGDGO_REF:0000052 and PMID:23826168
Pdia3Ratendoplasmic reticulum located_inISSUniProtKB:P301011600115GO_REF:0000024UniProtGO_REF:0000024
Pdia3Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Pdia3Ratendoplasmic reticulum lumen located_inIEAUniProtKB-SubCell:SL-00961600115GO_REF:0000044UniProtGO_REF:0000044
Pdia3Ratextracellular region  IDA 9999140 RGD 
Pdia3Ratextracellular space  IDA 9999164 RGD 
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Molecular Function
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Pdia3Ratidentical protein binding enablesISOPDIA3 (Homo sapiens)1624291UniProtKB:P30101 and PMID:16905107RGDPMID:16905107
Pdia3Ratidentical protein binding enablesIEAUniProtKB:P30101 and ensembl:ENSP000003002891600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratisomerase activity enablesIEAUniProtKB-KW:KW-04131600115GO_REF:0000043UniProtGO_REF:0000043
Pdia3RatlncRNA binding enablesISOPdia3 (Mus musculus)1624291MGI:1925615 PMID:36647387RGDPMID:36647387
Pdia3RatlncRNA binding enablesIEAUniProtKB:P27773 and ensembl:ENSMUSP000000286831600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3RatMHC class I protein binding  IDA 9999147 RGD 
Pdia3Ratpeptidase activity  IDA 9999188 RGD 
Pdia3Ratprotein binding  IPISlc12a3 (Rattus norvegicus)632898 RGD 
Pdia3Ratprotein binding enablesISOPdia3 (Mus musculus)1624291PR:O55143 more ...RGDPMID:21093319 more ...
Pdia3Ratprotein binding enablesISOPDIA3 (Homo sapiens)1624291UniProtKB:O00182 more ...RGDPMID:15896298 more ...
Pdia3Ratprotein binding enablesIPIUniProtKB:Q99JC613792542PMID:17947644UniProt 
Pdia3Ratprotein binding  IPICapn1 (Rattus norvegicus) and Capns1 (Rattus norvegicus)9999185 RGD 
Pdia3Ratprotein disulfide isomerase activity enablesIEAInterPro:IPR005788 and InterPro:IPR0057921600115GO_REF:0000002InterProGO_REF:0000002
Pdia3Ratprotein disulfide isomerase activity enablesIBAMGI:104864 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pdia3Ratprotein disulfide isomerase activity enablesIEAInterPro:IPR0057881600115GO_REF:0000002InterProGO_REF:0000002
Pdia3Ratprotein disulfide isomerase activity enablesIEAEC:5.3.4.11600115GO_REF:0000003UniProtGO_REF:0000003
Pdia3Ratprotein-disulfide reductase (glutathione) activity  IMP 9999151 RGD 
Pdia3Ratprotein-disulfide reductase activity enablesIEAUniProtKB:P30101 and ensembl:ENSP000003002891600115GO_REF:0000107EnsemblGO_REF:0000107
Pdia3Ratprotein-disulfide reductase activity enablesISOPDIA3 (Homo sapiens)1624291 PMID:16677074RGDPMID:16677074
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Imported Annotations - KEGG (archival)

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Original Reference(s)
Pdia3Ratantigen processing and presentation pathway  IEA 6907045 KEGGrno:04612
Pdia3RatEndoplasmic Reticulum-associated degradation pathway  IEA 6907045 KEGGrno:04141

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#
Reference Title
Reference Citation
1. The oxidoreductase ERp57 efficiently reduces partially folded in preference to fully folded MHC class I molecules. Antoniou AN, etal., EMBO J. 2002 Jun 3;21(11):2655-63.
2. A proteomic analysis of liver after ethanol binge in chronically ethanol treated rats. Aroor AR, etal., Proteome Sci. 2012 Apr 30;10(1):29. doi: 10.1186/1477-5956-10-29.
3. Molecular cloning and complete amino-acid sequence of form-I phosphoinositide-specific phospholipase C. Bennett CF, etal., Nature 1988 Jul 21;334(6179):268-70.
4. PDIA3 mRNA expression and IL-2, IL-4, IL-6, and CRP levels of acute kidney allograft rejection in rat. Chen G, etal., Mol Biol Rep. 2012 May;39(5):5233-8. doi: 10.1007/s11033-011-1321-1. Epub 2011 Dec 27.
5. [Proteomic expression analysis of colonic mucosa in a rat model of irritable bowel syndrome]. Ding Y, etal., Zhonghua Yi Xue Za Zhi. 2010 Mar 2;90(8):564-9.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Dehydration-induced proteome changes in the rat hypothalamo-neurohypophyseal system. Gouraud SS, etal., Endocrinology. 2007 Jul;148(7):3041-52. Epub 2007 Apr 5.
8. The disulfide isomerase Grp58 is a protective factor against prion neurotoxicity. Hetz C, etal., J Neurosci. 2005 Mar 16;25(11):2793-802.
9. An interaction map of endoplasmic reticulum chaperones and foldases. Jansen G, etal., Mol Cell Proteomics. 2012 Sep;11(9):710-23. doi: 10.1074/mcp.M111.016550. Epub 2012 Jun 4.
10. Evidence for phosphorylation of rat liver glucose-regulated protein 58, GRP58/ERp57/ER-60, induced by fasting and leptin. Kita K, etal., FEBS Lett. 2006 Jan 9;580(1):199-205. Epub 2005 Dec 9.
11. Life-long effects of perinatal asphyxia on stress-induced proteins and dynamin 1 in rat brain. Kitzmueller E, etal., Neurochem Res. 2004 Sep;29(9):1767-77.
12. Identification of seven proteins in the endoplasmic reticulum as targets for reactive metabolites of bromobenzene. Koen YM and Hanzlik RP, Chem Res Toxicol. 2002 May;15(5):699-706.
13. LKM-1 sera from autoimmune hepatitis patients that recognize ERp57, carboxylesterase 1 and CYP2D6. Komurasaki R, etal., Drug Metab Pharmacokinet. 2010;25(1):84-92.
14. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
15. A role for the thiol-dependent reductase ERp57 in the assembly of MHC class I molecules. Morrice NA and Powis SJ, Curr Biol. 1998 Jun 4;8(12):713-6.
16. Proteomic analysis of the lung in rats with hypobaric hypoxia-induced pulmonary hypertension. Ohata Y, etal., Histol Histopathol. 2013 Jul;28(7):893-902. Epub 2013 Jan 10.
17. ERp57-associated mitochondrial micro-calpain truncates apoptosis-inducing factor. Ozaki T, etal., Biochim Biophys Acta. 2008 Oct;1783(10):1955-63. doi: 10.1016/j.bbamcr.2008.05.011. Epub 2008 May 24.
18. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
19. GOA pipeline RGD automated data pipeline
20. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
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PMID:1321829   PMID:1650195   PMID:1657921   PMID:2181662   PMID:9399589   PMID:9493907   PMID:10464281   PMID:13678524   PMID:15489334   PMID:15858817   PMID:15862830   PMID:16260597  
PMID:16516209   PMID:16677074   PMID:16905107   PMID:17154719   PMID:17634366   PMID:18765931   PMID:19199708   PMID:19995400   PMID:20109102   PMID:20130111   PMID:20387083   PMID:21263072  
PMID:21423176   PMID:21630459   PMID:21734266   PMID:21976707   PMID:22658674   PMID:23106098   PMID:23226417   PMID:23376485   PMID:23826168   PMID:24415168   PMID:25241190   PMID:26724776  
PMID:28707894   PMID:29104478   PMID:29581031   PMID:31176989   PMID:34338991   PMID:35352799  



Pdia3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,841,781 - 128,865,733 (+)NCBIGRCr8
mRatBN7.23108,388,189 - 108,412,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,388,245 - 108,413,236 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,062,478 - 112,086,451 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03120,657,999 - 120,681,970 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03118,318,399 - 118,342,371 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03113,376,983 - 113,400,707 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,376,983 - 113,400,707 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,916,772 - 119,940,826 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,216,414 - 108,240,138 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,117,203 - 108,140,928 (+)NCBI
Celera3107,289,603 - 107,313,229 (+)NCBICelera
Cytogenetic Map3q35NCBI
PDIA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,746,438 - 43,773,278 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,746,394 - 43,773,279 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,038,636 - 44,065,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,825,882 - 41,852,096 (+)NCBINCBI36Build 36hg18NCBI36
Celera1520,928,053 - 20,954,266 (+)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,861,356 - 20,887,666 (+)NCBIHuRef
CHM1_11544,156,851 - 44,183,060 (+)NCBICHM1_1
T2T-CHM13v2.01541,553,795 - 41,580,638 (+)NCBIT2T-CHM13v2.0
Pdia3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,244,383 - 121,269,168 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,244,256 - 121,269,168 (+)EnsemblGRCm39 Ensembl
GRCm382121,413,902 - 121,438,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,413,775 - 121,438,687 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,239,638 - 121,264,423 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,105,401 - 121,129,421 (+)NCBIMGSCv36mm8
Celera2122,564,601 - 122,589,381 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.38NCBI
Pdia3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,198,099 - 10,220,792 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,197,957 - 10,221,104 (+)NCBIChiLan1.0ChiLan1.0
PDIA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21632,997,271 - 33,023,322 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,158,999 - 37,185,059 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,706,520 - 22,731,672 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,794,144 - 40,821,615 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,794,144 - 40,821,763 (+)Ensemblpanpan1.1panPan2
PDIA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,487,926 - 10,513,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,487,921 - 10,513,397 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,546,317 - 10,571,800 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,624,436 - 10,649,938 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,624,468 - 10,651,817 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,533,603 - 10,559,083 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,655,339 - 10,680,999 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,775,223 - 10,800,728 (+)NCBIUU_Cfam_GSD_1.0
Pdia3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864088,961,177 - 88,986,202 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364716,809,195 - 6,836,169 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364716,809,181 - 6,834,189 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDIA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,785,772 - 127,814,196 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,786,174 - 127,814,096 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,615,686 - 142,643,747 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDIA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,273,982 - 39,300,170 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,272,997 - 39,349,966 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048101,691,336 - 101,717,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdia3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480410,755,103 - 10,784,337 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480410,754,978 - 10,784,641 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pdia3
166 total Variants

Predicted Target Of
Summary Value
Count of predictions:404
Count of miRNA genes:229
Interacting mature miRNAs:270
Transcripts:ENSRNOT00000020478
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat

1 to 10 of 41 rows
RH131986  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23108,412,652 - 108,412,850 (+)MAPPERmRatBN7.2
Rnor_6.03113,401,350 - 113,401,547NCBIRnor6.0
Rnor_5.03119,941,469 - 119,941,666UniSTSRnor5.0
RGSC_v3.43108,240,781 - 108,240,978UniSTSRGSC3.4
Celera3107,313,872 - 107,314,069UniSTS
RH 3.4 Map3953.6UniSTS
Cytogenetic Map3q35UniSTS
BE107553  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23108,407,474 - 108,407,641 (+)MAPPERmRatBN7.2
Rnor_6.03113,396,172 - 113,396,338NCBIRnor6.0
Rnor_5.03119,936,291 - 119,936,457UniSTSRnor5.0
RGSC_v3.43108,235,603 - 108,235,769UniSTSRGSC3.4
Celera3107,308,692 - 107,308,858UniSTS
RH 3.4 Map3954.5UniSTS
Cytogenetic Map3q35UniSTS
RH138056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23108,390,715 - 108,390,871 (+)MAPPERmRatBN7.2
mRatBN7.2456,924,637 - 56,924,731 (+)MAPPERmRatBN7.2
Rnor_6.03113,379,415 - 113,379,570NCBIRnor6.0
Rnor_5.03119,919,204 - 119,919,648UniSTSRnor5.0
Rnor_5.03119,919,204 - 119,919,359UniSTSRnor5.0
RGSC_v3.43108,218,846 - 108,219,001UniSTSRGSC3.4
Celera3107,292,035 - 107,292,190UniSTS
RH 3.4 Map3947.6UniSTS
Cytogenetic Map3q35UniSTS
Grp58  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83128,865,601 - 128,865,727 (+)Marker Load Pipeline
mRatBN7.23108,411,882 - 108,412,007 (+)MAPPERmRatBN7.2
Rnor_6.03113,400,580 - 113,400,704NCBIRnor6.0
Rnor_5.03119,940,699 - 119,940,823UniSTSRnor5.0
RGSC_v3.43108,240,011 - 108,240,135UniSTSRGSC3.4
Celera3107,313,102 - 107,313,226UniSTS
Cytogenetic Map3q35UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000020478   ⟹   ENSRNOP00000020478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3108,388,249 - 108,411,982 (+)Ensembl
Rnor_6.0 Ensembl3113,376,983 - 113,400,707 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113825   ⟹   ENSRNOP00000083210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3108,388,245 - 108,413,236 (+)Ensembl
RefSeq Acc Id: NM_017319   ⟹   NP_059015
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,841,914 - 128,865,733 (+)NCBI
mRatBN7.23108,388,189 - 108,412,013 (+)NCBI
Rnor_6.03113,376,983 - 113,400,707 (+)NCBI
Rnor_5.03119,916,772 - 119,940,826 (+)NCBI
RGSC_v3.43108,216,414 - 108,240,138 (+)RGD
Celera3107,289,603 - 107,313,229 (+)RGD
Sequence:
RefSeq Acc Id: XM_063283216   ⟹   XP_063139286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,841,781 - 128,865,731 (+)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_059015 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139286 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH62393 (Get FASTA)   NCBI Sequence Viewer  
  BAA09695 (Get FASTA)   NCBI Sequence Viewer  
  CAA30916 (Get FASTA)   NCBI Sequence Viewer  
  EDL79991 (Get FASTA)   NCBI Sequence Viewer  
  EDL79992 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000083210
GenBank Protein P11598 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_059015   ⟸   NM_017319
- Peptide Label: precursor
- UniProtKB: P11598 (UniProtKB/Swiss-Prot),   A0A8I6GAH4 (UniProtKB/TrEMBL),   A6HPP1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020478   ⟸   ENSRNOT00000020478
Ensembl Acc Id: ENSRNOP00000083210   ⟸   ENSRNOT00000113825
RefSeq Acc Id: XP_063139286   ⟸   XM_063283216
- Peptide Label: isoform X1
- UniProtKB: P11598 (UniProtKB/Swiss-Prot)
Thioredoxin

Name Modeler Protein Id AA Range Protein Structure
AF-P11598-F1-model_v2 AlphaFold P11598 1-505 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692356
Promoter ID:EPDNEW_R2881
Type:multiple initiation site
Name:Pdia3_1
Description:protein disulfide isomerase family A, member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03113,376,951 - 113,377,011EPDNEW


1 to 30 of 30 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-48134 BioCyc
Ensembl Genes ENSRNOG00000015018 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000113825 ENTREZGENE
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621329 IMAGE-MGC_LOAD
InterPro Disulphide_isomerase UniProtKB/Swiss-Prot
  PDIA3_PDI_b UniProtKB/Swiss-Prot
  Prot_disulphide_isomerase UniProtKB/Swiss-Prot
  Thioredoxin-like_sf UniProtKB/Swiss-Prot
  Thioredoxin_CS UniProtKB/Swiss-Prot
  Thioredoxin_domain UniProtKB/Swiss-Prot
KEGG Report rno:29468 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72503 IMAGE-MGC_LOAD
NCBI Gene 29468 ENTREZGENE
PANTHER PROTEIN DISULFIDE ISOMERASE UniProtKB/Swiss-Prot
  PROTEIN DISULFIDE-ISOMERASE A3 UniProtKB/Swiss-Prot
Pfam Thioredoxin UniProtKB/Swiss-Prot
  Thioredoxin_6 UniProtKB/Swiss-Prot
PhenoGen Pdia3 PhenoGen
PRINTS THIOREDOXIN UniProtKB/Swiss-Prot
PROSITE THIOREDOXIN_1 UniProtKB/Swiss-Prot
  THIOREDOXIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015018 RatGTEx
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
TIGR TC217371
UniProt A0A0H2UHM5_RAT UniProtKB/TrEMBL
  A0A8I6GAH4 ENTREZGENE, UniProtKB/TrEMBL
  A6HPP0_RAT UniProtKB/TrEMBL
  A6HPP1 ENTREZGENE, UniProtKB/TrEMBL
  P11598 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 30 of 30 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-10 Pdia3  protein disulfide isomerase family A, member 3  Pdia3  protein disulfide isomerase associated 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Pdia3  protein disulfide isomerase associated 3      Symbol and Name updated 1299863 APPROVED
2002-06-10 Grp58  glucose regulated protein, 58 kDa      Name updated 70584 APPROVED

Note Type Note Reference
gene_process increases activity of the thiazide-sensitive Na-Cl cotransporter 632898