Macrod1 (mono-ADP ribosylhydrolase 1) - Rat Genome Database

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Gene: Macrod1 (mono-ADP ribosylhydrolase 1) Rattus norvegicus
Analyze
Symbol: Macrod1
Name: mono-ADP ribosylhydrolase 1
RGD ID: 628701
Description: Predicted to enable ADP-ribosylglutamate hydrolase activity and deacetylase activity. Predicted to be involved in DNA damage response; peptidyl-glutamate ADP-deribosylation; and purine nucleoside metabolic process. Predicted to be located in mitochondrion and nucleus. Predicted to be active in nucleoplasm. Orthologous to human MACROD1 (mono-ADP ribosylhydrolase 1); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: [Protein ADP-ribosylaspartate] hydrolase MACROD1; [Protein ADP-ribosylglutamate] hydrolase; [Protein ADP-ribosylglutamate] hydrolase MACROD1; ADP-ribose glycohydrolase MACROD1; Lrp16; MACRO domain containing 1; MACRO domain-containing protein 1; O-acetyl-ADP-ribose deacetylase; O-acetyl-ADP-ribose deacetylase MACROD1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,675,413 - 213,831,571 (+)NCBIGRCr8
mRatBN7.21204,246,238 - 204,387,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,246,166 - 204,389,716 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,596,116 - 212,736,945 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,691,528 - 219,832,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,382,579 - 212,523,308 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,310,916 - 222,451,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,310,920 - 222,451,484 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,301,706 - 229,442,053 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,730,907 - 209,871,392 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,889,336 - 210,029,821 (+)NCBI
Celera1201,779,880 - 201,919,740 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Macrod1Rathereditary spastic paraplegia  ISOMACROD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegiaClinVarPMID:28832565
Macrod1Ratintellectual disability  ISOMACROD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Macrod1Ratleukocyte adhesion deficiency 3  ISOMACROD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Leukocyte adhesion deficiency 3ClinVarPMID:28492532
Macrod1Ratmultiple endocrine neoplasia type 1  ISOMACROD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple endocrine neoplasia and type 1ClinVarPMID:17065424 more ...
Macrod1Ratneuropathy  ISOMACROD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Peripheral neuropathyClinVarPMID:25741868 and PMID:28492532
Macrod1Ratperipheral nervous system disease  ISOMACROD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Peripheral neuropathyClinVarPMID:25741868 and PMID:28492532

1 to 20 of 124 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Macrod1Rat1,1-dichloroethene decreases expressionISOMacrod1 (Mus musculus)6480464vinylidene chloride results in decreased expression of MACROD1 mRNACTDPMID:26682919
Macrod1Rat1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsISOMacrod1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Macrod1Rat1,2-dimethylhydrazine decreases expressionISOMacrod1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of MACROD1 mRNACTDPMID:22206623
Macrod1Rat17beta-estradiol decreases expressionISOMacrod1 (Mus musculus)6480464Estradiol results in decreased expression of MACROD1 mRNACTDPMID:39298647
Macrod1Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOMacrod1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Macrod1Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOMacrod1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Macrod1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of MACROD1 mRNACTDPMID:21215274
Macrod1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of MACROD1 mRNACTDPMID:33387578
Macrod1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOMacrod1 (Mus musculus)6480464MACROD1 protein inhibits the reaction [[TIPARP protein results in increased ADP-ribosylation of and results in decreased activity of AHR protein] which results in decreased susceptibility to Tetrachlorodibenzodioxin]CTDPMID:25975270
Macrod1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOMACROD1 (Homo sapiens)6480464MACROD1 protein inhibits the reaction [[TIPARP protein results in increased ADP-ribosylation of and results in decreased activity of AHR protein] which results in decreased susceptibility to Tetrachlorodibenzodioxin] and MACROD1 protein inhibits the reaction [TIPARP protein inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of CYP1A1 mRNA]]CTDPMID:25975270
Macrod1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOMacrod1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of MACROD1 mRNACTDPMID:21570461
Macrod1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of MACROD1 mRNACTDPMID:22298810
Macrod1Rat2,3,7,8-Tetrachlorodibenzofuran increases expressionEXP 64804642 more ...CTDPMID:32109520
Macrod1Rat2,4,4'-trichlorobiphenyl multiple interactionsISOMacrod1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Macrod1Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of MACROD1 mRNACTDPMID:21346803
Macrod1Rat2,5-hexanedione increases expressionEXP 64804642 and 5-hexanedione results in increased expression of MACROD1 mRNACTDPMID:22382377
Macrod1Rat2,5-hexanedione multiple interactionsEXP 6480464[carbendazim co-treated with 2 and 5-hexanedione] results in decreased expression of MACROD1 mRNACTDPMID:22382377
Macrod1Rat3-chloropropane-1,2-diol decreases expressionEXP 6480464alpha-Chlorohydrin results in decreased expression of MACROD1 proteinCTDPMID:34915118
Macrod1Rat4-hydroxyphenyl retinamide increases expressionISOMacrod1 (Mus musculus)6480464Fenretinide results in increased expression of MACROD1 mRNACTDPMID:28973697
Macrod1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of MACROD1 mRNACTDPMID:24780913

1 to 20 of 124 rows

Biological Process
1 to 15 of 15 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Macrod1Ratbiological_process  ND 159840708/2018:no relevant rat dataRGD 
Macrod1RatDNA damage response involved_inISSUniProtKB:Q9BQ691600115GO_REF:0000024UniProtGO_REF:0000024
Macrod1RatDNA damage response involved_inIBAPANTHER:PTN000873835 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Macrod1RatDNA damage response involved_inIEAUniProtKB-KW:KW-02271600115GO_REF:0000043UniProtGO_REF:0000043
Macrod1RatDNA damage response involved_inISOMACROD1 (Homo sapiens)1624291 PMID:23474712RGDPMID:23474712
Macrod1RatDNA damage response involved_inIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Ratpeptidyl-glutamate ADP-deribosylation involved_inISSUniProtKB:Q9BQ691600115GO_REF:0000024UniProtGO_REF:0000024
Macrod1Ratpeptidyl-glutamate ADP-deribosylation involved_inISOMACROD1 (Homo sapiens)1624291 PMID:23474714RGDPMID:23474714
Macrod1Ratpeptidyl-glutamate ADP-deribosylation involved_inIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Ratprotein de-ADP-ribosylation involved_inISSUniProtKB:Q9BQ691600115GO_REF:0000024UniProtGO_REF:0000024
Macrod1Ratprotein de-ADP-ribosylation involved_inIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Ratprotein de-ADP-ribosylation involved_inISOMACROD1 (Homo sapiens)1624291 PMID:23474712RGDPMID:23474712
Macrod1Ratpurine nucleoside metabolic process involved_inIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Ratpurine nucleoside metabolic process involved_inIBAPANTHER:PTN000873835 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Macrod1Ratpurine nucleoside metabolic process involved_inISOMACROD1 (Homo sapiens)1624291 PMID:21257746RGDPMID:21257746
1 to 15 of 15 rows

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Macrod1Ratmitochondrion located_inISOMACROD1 (Homo sapiens)9068941 PMID:34800366FlyBasePMID:34800366
Macrod1Ratnucleoplasm located_inIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Ratnucleoplasm is_active_inIBAPANTHER:PTN000873835 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Macrod1Ratnucleoplasm located_inISOMACROD1 (Homo sapiens)1624291 RGDGO_REF:0000052
Macrod1Ratnucleus located_inISSUniProtKB:Q9BQ691600115GO_REF:0000024UniProtGO_REF:0000024
Macrod1Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Macrod1Ratnucleus located_inIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Macrod1Ratnucleus located_inISOMACROD1 (Homo sapiens)1624291 PMID:23474712RGDPMID:23474712
1 to 9 of 9 rows

Molecular Function
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Macrod1RatADP-ribosylglutamate hydrolase activity enablesISSUniProtKB:Q9BQ691600115GO_REF:0000024UniProtGO_REF:0000024
Macrod1RatADP-ribosylglutamate hydrolase activity enablesIBAPANTHER:PTN000873835 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Macrod1RatADP-ribosylglutamate hydrolase activity enablesISOMACROD1 (Homo sapiens)1624291 PMID:23474714RGDPMID:23474714
Macrod1RatADP-ribosylglutamate hydrolase activity enablesIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Ratdeacetylase activity enablesIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Ratdeacetylase activity enablesISOMACROD1 (Homo sapiens)1624291 PMID:21257746RGDPMID:21257746
Macrod1Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Macrod1Rathydrolase activity, acting on glycosyl bonds enablesISSUniProtKB:Q9BQ691600115GO_REF:0000024UniProtGO_REF:0000024
Macrod1Rathydrolase activity, acting on glycosyl bonds enablesIEAUniProtKB:Q9BQ69 and ensembl:ENSP000002556811600115GO_REF:0000107EnsemblGO_REF:0000107
Macrod1Rathydrolase activity, acting on glycosyl bonds enablesISOMACROD1 (Homo sapiens)1624291 PMID:23474712RGDPMID:23474712
Macrod1RatO-acetyl-ADP-ribose deacetylase activity enablesIEAEC:3.1.1.1061600115GO_REF:0000003UniProtGO_REF:0000003
Macrod1RatO-acetyl-ADP-ribose deacetylase activity enablesIEARHEA:57060 and RHEA:592441600115GO_REF:0000116RHEAGO_REF:0000116
Macrod1Ratprotein binding enablesISOMACROD1 (Homo sapiens)1624291UniProtKB:P03372 more ...RGDPMID:17914104 more ...
1 to 13 of 13 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Macrod1RatADP-ribosylation pathway, mono and poly-ribosylation  ISOMACROD1 (Homo sapiens)11100038 RGD 

#
Reference Title
Reference Citation
1. Structures and Mechanisms of Enzymes Employed in the Synthesis and Degradation of PARP-Dependent Protein ADP-Ribosylation. Barkauskaite E, etal., Mol Cell. 2015 Jun 18;58(6):935-46. doi: 10.1016/j.molcel.2015.05.007.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Up-regulation of LRP16 mRNA by 17beta-estradiol through activation of estrogen receptor alpha (ERalpha), but not ERbeta, and promotion of human breast cancer MCF-7 cell proliferation: a preliminary report. Han WD, etal., Endocr Relat Cancer 2003 Jun;10(2):217-24.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
PMID:14651853   PMID:21257746   PMID:23474712   PMID:23474714   PMID:34800366  



Macrod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,675,413 - 213,831,571 (+)NCBIGRCr8
mRatBN7.21204,246,238 - 204,387,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,246,166 - 204,389,716 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,596,116 - 212,736,945 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,691,528 - 219,832,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,382,579 - 212,523,308 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,310,916 - 222,451,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,310,920 - 222,451,484 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,301,706 - 229,442,053 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,730,907 - 209,871,392 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,889,336 - 210,029,821 (+)NCBI
Celera1201,779,880 - 201,919,740 (+)NCBICelera
Cytogenetic Map1q43NCBI
MACROD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381163,998,558 - 64,166,113 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1163,998,558 - 64,166,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371163,766,030 - 63,933,585 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,522,606 - 63,690,094 (-)NCBINCBI36Build 36hg18NCBI36
Celera1161,092,805 - 61,259,693 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,094,651 - 60,262,257 (-)NCBIHuRef
CHM1_11163,649,362 - 63,816,761 (-)NCBICHM1_1
T2T-CHM13v2.01163,988,261 - 64,156,074 (-)NCBIT2T-CHM13v2.0
Macrod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,034,065 - 7,175,427 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,034,178 - 7,175,422 (+)EnsemblGRCm39 Ensembl
GRCm38197,056,728 - 7,198,062 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,056,810 - 7,198,057 (+)EnsemblGRCm38mm10GRCm38
MGSCv37197,131,258 - 7,272,552 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,123,854 - 7,265,101 (+)NCBIMGSCv36mm8
Celera196,833,702 - 6,974,873 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.17NCBI
Macrod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,906,521 - 21,046,345 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,906,406 - 21,046,448 (+)NCBIChiLan1.0ChiLan1.0
MACROD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,225,170 - 65,395,360 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,270,344 - 66,440,420 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,355,525 - 59,525,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,702,882 - 62,872,214 (-)NCBIpanpan1.1PanPan1.1panPan2
MACROD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,883,335 - 53,033,490 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,883,362 - 53,162,034 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,489,863 - 51,639,723 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,928,478 - 54,078,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,928,502 - 54,078,349 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,031,114 - 53,180,737 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,606,591 - 52,756,405 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,390,848 - 53,540,728 (+)NCBIUU_Cfam_GSD_1.0
Macrod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,576,259 - 8,712,495 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365995,018,770 - 5,154,491 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365995,018,636 - 5,154,844 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MACROD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,939,125 - 8,088,595 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,939,125 - 8,087,656 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,054,730 - 7,204,542 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MACROD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,072,238 - 10,247,121 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl110,072,263 - 10,250,203 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,414,491 - 107,583,049 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Macrod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,135,881 - 22,278,329 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,135,972 - 22,278,429 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Macrod1
397 total Variants

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:51
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000028749
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat

1 to 10 of 84 rows
RH135442  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21204,259,288 - 204,259,469 (+)MAPPERmRatBN7.2
Rnor_6.01222,323,985 - 222,324,165NCBIRnor6.0
Rnor_5.01229,314,750 - 229,314,930UniSTSRnor5.0
RGSC_v3.41209,743,755 - 209,743,935UniSTSRGSC3.4
Celera1201,792,698 - 201,792,878UniSTS
Cytogenetic Map1q43UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 16 of 16 rows
RefSeq Transcripts NM_139337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF404762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF419856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSRNOT00000028749   ⟹   ENSRNOP00000028749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1204,253,293 - 204,387,011 (+)Ensembl
Rnor_6.0 Ensembl1222,311,253 - 222,451,484 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091465   ⟹   ENSRNOP00000073401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1204,246,166 - 204,387,025 (+)Ensembl
Rnor_6.0 Ensembl1222,310,920 - 222,451,153 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106741   ⟹   ENSRNOP00000097100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1204,246,222 - 204,389,716 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111101   ⟹   ENSRNOP00000082162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1204,253,293 - 204,387,011 (+)Ensembl
RefSeq Acc Id: NM_139337   ⟹   NP_647553
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,477 - 213,816,211 (+)NCBI
mRatBN7.21204,246,279 - 204,387,026 (+)NCBI
Rnor_6.01222,311,253 - 222,451,485 (+)NCBI
Rnor_5.01229,301,706 - 229,442,053 (+)NCBI
RGSC_v3.41209,730,907 - 209,871,392 (+)RGD
Celera1201,779,880 - 201,919,740 (+)RGD
Sequence:
RefSeq Acc Id: XM_006230677   ⟹   XP_006230739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,413 - 213,831,571 (+)NCBI
mRatBN7.21204,246,248 - 204,387,027 (+)NCBI
Rnor_6.01222,310,916 - 222,451,485 (+)NCBI
Rnor_5.01229,301,706 - 229,442,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099824   ⟹   XP_038955752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,430 - 213,686,772 (+)NCBI
mRatBN7.21204,246,238 - 204,262,837 (+)NCBI
RefSeq Acc Id: XM_039099857   ⟹   XP_038955785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,430 - 213,733,917 (+)NCBI
mRatBN7.21204,246,239 - 204,303,428 (+)NCBI
RefSeq Acc Id: XM_039099901   ⟹   XP_038955829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,430 - 213,711,334 (+)NCBI
mRatBN7.21204,246,239 - 204,283,265 (+)NCBI
RefSeq Acc Id: XM_039099939   ⟹   XP_038955867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,430 - 213,760,101 (+)NCBI
mRatBN7.21204,246,240 - 204,343,141 (+)NCBI
RefSeq Acc Id: XM_039099975   ⟹   XP_038955903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,430 - 213,719,955 (+)NCBI
mRatBN7.21204,246,240 - 204,300,885 (+)NCBI
RefSeq Acc Id: XM_063280960   ⟹   XP_063137030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,430 - 213,793,012 (+)NCBI
RefSeq Acc Id: XR_010063054
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,675,413 - 213,831,571 (+)NCBI
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_647553   ⟸   NM_139337
- UniProtKB: A0A0G2K5F1 (UniProtKB/TrEMBL),   A6HZN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230739   ⟸   XM_006230677
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AN55 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028749   ⟸   ENSRNOT00000028749
Ensembl Acc Id: ENSRNOP00000073401   ⟸   ENSRNOT00000091465
RefSeq Acc Id: XP_038955752   ⟸   XM_039099824
- Peptide Label: isoform X3
Macro

Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4G6-F1-model_v2 AlphaFold Q8K4G6 1-258 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13690732
Promoter ID:EPDNEW_R1242
Type:initiation region
Name:Macrod1_1
Description:MACRO domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01222,310,961 - 222,311,021EPDNEW


1 to 23 of 23 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-56564 BioCyc
Ensembl Genes ENSRNOG00000021174 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000091465 ENTREZGENE
  ENSRNOT00000106741 ENTREZGENE
Gene3D-CATH 3.40.220.10 UniProtKB/Swiss-Prot
InterPro Macro_dom UniProtKB/Swiss-Prot
  Macro_dom-like UniProtKB/Swiss-Prot
KEGG Report rno:246233 UniProtKB/Swiss-Prot
NCBI Gene 246233 ENTREZGENE
PANTHER ADP-RIBOSE GLYCOHYDROLASE MACROD1 UniProtKB/Swiss-Prot
  GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED UniProtKB/Swiss-Prot
Pfam Macro UniProtKB/Swiss-Prot
PhenoGen Macrod1 PhenoGen
PROSITE MACRO UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000021174 RatGTEx
SMART A1pp UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52949 UniProtKB/Swiss-Prot
UniProt A0A0G2K5F1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZTN4_RAT UniProtKB/TrEMBL
  A0A8I6AN55 ENTREZGENE, UniProtKB/TrEMBL
  A6HZN3 ENTREZGENE, UniProtKB/TrEMBL
  G3V8V6_RAT UniProtKB/TrEMBL
  MACD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 23 of 23 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Macrod1  mono-ADP ribosylhydrolase 1  Macrod1  MACRO domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Macrod1  MACRO domain containing 1  Lrp16  LRP16 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Lrp16  LRP16 protein      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Lrp16  LRP16 protein      Symbol and Name status set to provisional 70820 PROVISIONAL