LOC120096659 (60S ribosomal protein L36-like) - Rat Genome Database

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Gene: LOC120096659 (60S ribosomal protein L36-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120096659
Name: 60S ribosomal protein L36-like
RGD ID: 41280378
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07015977.1; large ribosomal subunit protein eL36-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81487,581,947 - 87,586,444 (+)NCBIGRCr8
mRatBN7.21483,371,636 - 83,371,941 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1483,371,636 - 83,371,941 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1488,874,295 - 88,874,600 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120096659
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063273787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000078467   ⟹   ENSRNOP00000069250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1483,371,636 - 83,371,941 (+)Ensembl
RefSeq Acc Id: XM_063273787   ⟹   XP_063129857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,581,947 - 87,586,444 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063129857 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069250.1
Ensembl Acc Id: ENSRNOP00000069250   ⟸   ENSRNOT00000078467
RefSeq Acc Id: XP_063129857   ⟸   XM_063273787
- UniProtKB: A0A0G2JUV9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUV9-F1-model_v2 AlphaFold A0A0G2JUV9 1-101 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41280378 AgrOrtholog
BioCyc Gene G2FUF-15030 BioCyc
Ensembl Genes ENSRNOG00000061615 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078467.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1760 UniProtKB/TrEMBL
InterPro L36e_sf UniProtKB/TrEMBL
  Ribosomal_L36e UniProtKB/TrEMBL
NCBI Gene LOC120096659 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L36 UniProtKB/TrEMBL
  PTHR10114 UniProtKB/TrEMBL
Pfam Ribosomal_L36e UniProtKB/TrEMBL
PhenoGen LOC120096659 PhenoGen
PROSITE RIBOSOMAL_L36E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000061615 RatGTEx
UniProt A0A0G2JUV9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120096659  60S ribosomal protein L36-like  AABR07015977.1    Data merged from RGD:15014211 737654 PROVISIONAL
2021-01-27 LOC120096659  60S ribosomal protein L36-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07015977.1        Symbol and Name status set to provisional 45752 PROVISIONAL