Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Tnr | Rat | Gliosis | | ISO | TNR (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:15120744 | Tnr | Rat | Spontaneous Abortions | | ISO | TNR (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:18539642 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Imported Disease Annotations - OMIM
Gene-Chemical Interaction Annotations Click to see Annotation Detail View
Gene Ontology Annotations Click to see Annotation Detail View
Biological Process
Cellular Component
Molecular Function
Molecular Pathway Annotations Click to see Annotation Detail View
Imported Annotations - KEGG (archival)
Phenotype Annotations Click to see Annotation Detail View
Mammalian Phenotype
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Biological Process
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Cellular Component
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Phenotype Annotations
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Mammalian Phenotype
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References
References - curated
| # | Reference Title | Reference Citation |
| 1. | Characterization of biological pathways associated with a 1.37 Mbp genomic region protective of hypertension in Dahl S rats. | Cowley AW, etal., Physiol Genomics. 2014 Jun 1;46(11):398-410. doi: 10.1152/physiolgenomics.00179.2013. Epub 2014 Apr 8. |
| 2. | Molecular characterization and in situ mRNA localization of the neural recognition molecule J1-160/180: a modular structure similar to tenascin. | Fuss B, etal., J Cell Biol 1993 Mar;120(5):1237-49. |
| 3. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 4. | Rat tenascin-R gene: structure, chromosome location and transcriptional activity of promoter and exon 1. | Leprini A, etal., Cytogenet Cell Genet 1998;83(1-2):115-23. |
| 5. | Beta 1 integrin-mediated effects of tenascin-R domains EGFL and FN6-8 on neural stem/progenitor cell proliferation and differentiation in vitro. | Liao H, etal., J Biol Chem. 2008 Oct 10;283(41):27927-36. Epub 2008 Jul 24. |
| 6. | Molecular microdomains in a sensory terminal, the vestibular calyx ending. | Lysakowski A, etal., J Neurosci. 2011 Jul 6;31(27):10101-14. doi: 10.1523/JNEUROSCI.0521-11.2011. |
| 7. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
| 8. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 9. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
| 10. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 11. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
| 12. | Immunoelectron microscopic localization of the neural recognition molecules L1, NCAM, and its isoform NCAM180, the NCAM-associated polysialic acid, beta1 integrin and the extracellular matrix molecule tenascin-R in synapses of the adult rat hippocampus. | Schuster T, etal., J Neurobiol. 2001 Nov 5;49(2):142-58. |
| 13. | Tentative Sequence Identification Numbers | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
| 14. | Tenascin-R associates extracellularly with parvalbumin immunoreactive neurones but is synthesised by another neuronal population in the adult rat cerebral cortex. | Wintergerst ES, etal., J Neurocytol 2001 Apr;30(4):293-301. |
| 15. | Spatial and temporal regulation of tenascin-R glycosylation in the cerebellum. | Woodworth A, etal., J Biol Chem 2002 Dec 27;277(52):50941-7. |
Additional References at PubMed
| PMID:7530142 | PMID:9081628 | PMID:9294172 | PMID:9405406 | PMID:9507007 | PMID:9861042 | PMID:10341229 | PMID:10723065 | PMID:11077416 | PMID:11161481 | PMID:11377840 | PMID:12056833 |
| PMID:12882316 | PMID:14529817 | PMID:14681222 | PMID:15033179 | PMID:15034584 | PMID:15120744 | PMID:15296743 | PMID:15615725 | PMID:16262627 | PMID:16831557 | PMID:16870730 | PMID:17537973 |
| PMID:18364019 | PMID:19141078 | PMID:19459213 | PMID:29476059 |
Genomics
Comparative Map Data
| Tnr (Rattus norvegicus - Norway rat) |
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| TNR (Homo sapiens - human) |
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| Tnr (Mus musculus - house mouse) |
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| Tnr (Chinchilla lanigera - long-tailed chinchilla) |
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| TNR (Pan paniscus - bonobo/pygmy chimpanzee) |
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| TNR (Canis lupus familiaris - dog) |
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| Tnr (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| TNR (Sus scrofa - pig) |
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| TNR (Chlorocebus sabaeus - green monkey) |
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| Tnr (Heterocephalus glaber - naked mole-rat) |
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Variants
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Variants in Tnr
2432 total Variants 
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