Ntrk2 (neurotrophic receptor tyrosine kinase 2) - Rat Genome Database

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Gene: Ntrk2 (neurotrophic receptor tyrosine kinase 2) Rattus norvegicus
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Symbol: Ntrk2
Name: neurotrophic receptor tyrosine kinase 2
RGD ID: 3213
Description: Enables several functions, including brain-derived neurotrophic factor binding activity; brain-derived neurotrophic factor receptor activity; and protein homodimerization activity. Involved in several processes, including modulation of chemical synaptic transmission; positive regulation of intracellular signal transduction; and regulation of neuron projection development. Acts upstream of or within positive regulation of nuclear receptor-mediated glucocorticoid signaling pathway. Located in several cellular components, including dendritic spine; distal axon; and perikaryon. Is active in glutamatergic synapse; postsynaptic membrane; and presynapse. Used to study several diseases, including alcohol use disorder; brain disease (multiple); cognitive disorder (multiple); drug dependence (multiple); and glaucoma. Biomarker of several diseases, including alcohol use disorder; amphetamine abuse; anxiety disorder (multiple); brain disease (multiple); and neuropathy (multiple). Human ortholog(s) of this gene implicated in several diseases, including alcohol dependence; autistic disorder; developmental and epileptic encephalopathy 58; heroin dependence; and morbid obesity. Orthologous to human NTRK2 (neurotrophic receptor tyrosine kinase 2); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; mitogen activated protein kinase signaling pathway; neurotrophic factor signaling pathway; INTERACTS WITH (+)-pilocarpine; (S)-AMPA; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BDNF/NT-3 growth factors receptor; GP145-TrkB/GP95-TrkB; Neural receptor protein-tyrosine kinase (trkB); neurotrophic tyrosine kinase, receptor, type 2; neurotrophic tyrosine receptor kinase type 2; RATTRKB1; Tkrb; trk-B; trkB; trkB tyrosine kinase; TRKB1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8175,560,558 - 5,875,899 (-)NCBIGRCr8
mRatBN7.2175,558,992 - 5,870,299 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl175,559,043 - 5,869,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx175,584,315 - 5,894,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,120,448 - 7,429,363 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0175,580,732 - 5,891,094 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0175,934,651 - 6,245,778 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,933,729 - 6,244,676 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0178,156,432 - 8,464,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41711,494,463 - 11,811,654 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11711,494,462 - 11,811,645 (-)NCBI
Celera175,673,895 - 6,828,108 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Ntrk2Ratalcohol dependence onsetISONTRK2 (Homo sapiens)596933091DNA:SNP: :rs1439047RGD 
Ntrk2Ratalcohol dependence  ISONTRK2 (Homo sapiens)408395149DNA:SNPs: :rs993315 and rs10780691RGD 
Ntrk2Ratalcohol use disorder  IDA 596933095 RGD 
Ntrk2Ratalcohol use disorder treatmentIEP 596933362 RGD 
Ntrk2Ratalcohol use disorder  IEP 401965407 RGD 
Ntrk2Ratalcohol use disorder  ISONtrk2 (Mus musculus)401959614associated with Prenatal Exposure Delayed Effects and anxiety disorder:protein:decreased acetylation:brainRGD 
Ntrk2Ratalcohol withdrawal syndrome  IEP 596936245protein:increased phopsphorylation more ...RGD 
Ntrk2Ratalcohol withdrawal syndrome treatmentIDA 596933360associated with Binge DrinkingRGD 
Ntrk2Ratalcohol withdrawal syndrome treatmentIDA 596933361associated with Binge DrinkingRGD 
Ntrk2RatAlcohol-Related Disorders  IEP 401976554protein:altered expression:brainRGD 
Ntrk2RatAlcohol-Related Disorders  IEP 401976555protein:altered expression:brainRGD 
Ntrk2RatAlcoholic Intoxication  ISONtrk2 (Mus musculus)405850213mRNA:increased expression:basal nucleus and cerebral cortexRGD 
Ntrk2RatAlzheimer's disease  ISONtrk2 (Mus musculus)5684548 RGD 
Ntrk2RatAlzheimer's disease treatmentIEP 597015751 RGD 
Ntrk2RatAlzheimer's disease treatmentIEP 10059402 RGD 
Ntrk2RatAlzheimer's disease  ISONTRK2 (Homo sapiens)5508228sporadic AD and DNA:SNP:intron:rs2289656 (human)RGD 
Ntrk2Ratamphetamine abuse  IEP 596936246mRNA:increased expression:nucleus accumbensRGD 
Ntrk2Ratamphetamine abuse  IEP 596938173protein:altered expression:nucleus accumbens and ventral tegmental areaRGD 
Ntrk2Ratamphetamine abuse  IEP 597015747protein:increased expression:frontal cortex and striatumRGD 
Ntrk2Ratamphetamine abuse  ISONtrk2 (Mus musculus)596938171 RGD 
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Ntrk2Ratautism spectrum disorder  ISONTRK2 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868 and PMID:28492532
Ntrk2Ratdevelopmental and epileptic encephalopathy 58  ISONTRK2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
Ntrk2RatDevelopmental Disease  ISONTRK2 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental disorderClinVarPMID:25741868 and PMID:28492532
Ntrk2Ratgenetic disease  ISONTRK2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
Ntrk2Ratneuroblastoma  ISONTRK2 (Homo sapiens)8554872ClinVar Annotator: match by term: NeuroblastomaClinVarPMID:26822237
Ntrk2Ratobesity  ISONTRK2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868
Ntrk2RatObesity, Hyperphagia, and Developmental Delay  ISONTRK2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:15494731 more ...
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Ntrk2Ratautistic disorder  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20662941
Ntrk2Ratbipolar disorder  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19018715
Ntrk2RatCocaine-Related Disorders  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20826313 and PMID:20947769
Ntrk2RatDevelopmental Disabilities  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15494731
Ntrk2Rathigh grade glioma  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24705251
Ntrk2RatHyperkinesis  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20826313 and PMID:20947769
Ntrk2RatHyperphagia  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15494731
Ntrk2RatLewy body dementia  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19276553
Ntrk2Ratmalignant astrocytoma  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23817572
Ntrk2Ratneuroblastoma  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16051641
Ntrk2Ratobesity  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15494731
Ntrk2RatObesity, Hyperphagia, and Developmental Delay  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Ntrk2Ratstatus epilepticus  ISONTRK2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:8635431 and PMID:8821376
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Ntrk2Ratdevelopmental and epileptic encephalopathy 58  ISONTRK2 (Homo sapiens)7240710 OMIM 
Ntrk2RatObesity, Hyperphagia, and Developmental Delay  ISONTRK2 (Homo sapiens)7240710 OMIM 

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Ntrk2Rat(+)-pilocarpine multiple interactionsEXP 6480464Ketamine inhibits the reaction [Pilocarpine results in increased expression of NTRK2 mRNA] more ...CTDPMID:19686240 and PMID:8635431
Ntrk2Rat(+)-pilocarpine increases expressionEXP 6480464Pilocarpine results in increased expression of NTRK2 mRNACTDPMID:15183516 more ...
Ntrk2Rat(+)-syringaresinol beta-D-glucoside multiple interactionsISONtrk2 (Mus musculus)6480464[acanthoside B co-treated with Scopolamine] results in increased phosphorylation of NTRK2 proteinCTDPMID:31077737
Ntrk2Rat(20S)-ginsenoside Rg3 multiple interactionsISONTRK2 (Homo sapiens)6480464[staurosporine aglycone binds to and results in decreased activity of NTRK2 protein] inhibits the reaction [[Plant Extracts co-treated with Terpenes co-treated with ginsenoside Rg3] inhibits the reaction [Chlorodiphenyl (54% Chlorine) results in decreased expression of BDNF protein]] more ...CTDPMID:24394491
Ntrk2Rat(20S)-ginsenoside Rg3 multiple interactionsISONtrk2 (Mus musculus)6480464[Plant Extracts co-treated with Terpenes co-treated with ginsenoside Rg3] inhibits the reaction [Chlorodiphenyl (54% Chlorine) results in decreased expression of NTRK2 protein modified form] more ...CTDPMID:24394491
Ntrk2Rat(S)-AMPA multiple interactionsEXP 6480464[alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid co-treated with aniracetam] results in increased phosphorylation of NTRK2 proteinCTDPMID:15287886
Ntrk2Rat(S)-amphetamine increases expressionISONtrk2 (Mus musculus)6480464Dextroamphetamine results in increased expression of NTRK2 mRNACTDPMID:18681898
Ntrk2Rat(S)-nicotine multiple interactionsISONtrk2 (Mus musculus)6480464[Nicotine co-treated with Quartz] results in increased phosphorylation of NTRK2 protein and staurosporine aglycone inhibits the reaction [[Nicotine co-treated with Quartz] results in increased expression of NTRK2 protein]CTDPMID:36868510
Ntrk2Rat(S)-nicotine multiple interactionsISONTRK2 (Homo sapiens)6480464methyllycaconitine inhibits the reaction [Nicotine results in increased expression of NTRK2 protein]CTDPMID:16790237
Ntrk2Rat(S)-nicotine increases expressionISONTRK2 (Homo sapiens)6480464Nicotine results in increased expression of NTRK2 proteinCTDPMID:16790237
Ntrk2Rat1,2-dichloroethane decreases expressionISONtrk2 (Mus musculus)6480464ethylene dichloride results in decreased expression of NTRK2 mRNACTDPMID:28960355
Ntrk2Rat1,2-dimethylhydrazine decreases expressionISONtrk2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of NTRK2 mRNACTDPMID:22206623
Ntrk2Rat1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile multiple interactionsISONtrk2 (Mus musculus)6480464Citalopram results in increased phosphorylation of and results in increased activity of NTRK2 proteinCTDPMID:21666748
Ntrk2Rat1-fluoro-2,4-dinitrobenzene increases expressionISONTRK2 (Homo sapiens)6480464Dinitrofluorobenzene results in increased expression of NTRK2 mRNACTDPMID:23999411
Ntrk2Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of NTRK2 mRNACTDPMID:12075121 and PMID:15901920
Ntrk2Rat17beta-estradiol decreases expressionISONtrk2 (Mus musculus)6480464Estradiol results in decreased expression of NTRK2 mRNACTDPMID:25210133 and PMID:39298647
Ntrk2Rat17beta-estradiol multiple interactionsISONtrk2 (Mus musculus)6480464ESR1 protein promotes the reaction [Estradiol results in decreased expression of NTRK2 mRNA]CTDPMID:25210133
Ntrk2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONtrk2 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Lipopolysaccharides] results in decreased methylation of NTRK2 geneCTDPMID:21212295
Ntrk2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NTRK2 mRNACTDPMID:33387578
Ntrk2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of NTRK2 mRNACTDPMID:34747641

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Biological Process
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Ntrk2Ratbrain-derived neurotrophic factor receptor signaling pathway  IMP 1626132 RGD 
Ntrk2Ratbrain-derived neurotrophic factor receptor signaling pathway involved_inISONtrk2 (Mus musculus)1624291 PMID:16801538RGDPMID:16801538
Ntrk2Ratbrain-derived neurotrophic factor receptor signaling pathway involved_inISONTRK2 (Homo sapiens)1624291 PMID:15494731RGDPMID:15494731
Ntrk2Ratbrain-derived neurotrophic factor receptor signaling pathway involved_inIEAUniProtKB:P15209 and ensembl:ENSMUSP000000787571600115GO_REF:0000107EnsemblGO_REF:0000107
Ntrk2Ratbrain-derived neurotrophic factor receptor signaling pathway involved_inIDA 8554777PMID:1645620UniProt 
Ntrk2Ratbrain-derived neurotrophic factor receptor signaling pathway involved_inIEAUniProtKB:Q16620 and ensembl:ENSP000002771201600115GO_REF:0000107EnsemblGO_REF:0000107
Ntrk2Ratbrain-derived neurotrophic factor receptor signaling pathway involved_inIDA 8554094PMID:8627351UniProt 
Ntrk2Ratbrain-derived neurotrophic factor receptor signaling pathway involved_inISONtrk2 (Mus musculus) and PR:P15209-21624291 PMID:14603320RGDPMID:14603320
Ntrk2Ratcell communication involved_inIEAARBA:ARBA000289451600115GO_REF:0000117UniProtGO_REF:0000117
Ntrk2Ratcell differentiation involved_inIEAUniProtKB-KW:KW-02211600115GO_REF:0000043UniProtGO_REF:0000043
Ntrk2Ratcell surface receptor protein serine/threonine kinase signaling pathway involved_inIEAGO:00046751600115GO_REF:0000108GOCGO_REF:0000108
Ntrk2Ratcell surface receptor protein tyrosine kinase signaling pathway involved_inIEAInterPro:IPR020455 and InterPro:IPR0207771600115GO_REF:0000002InterProGO_REF:0000002
Ntrk2Ratcell surface receptor protein tyrosine kinase signaling pathway involved_inIBAFB:FBgn0003366 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ntrk2Ratcell surface receptor protein tyrosine kinase signaling pathway involved_inIEAInterPro:IPR002011 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Ntrk2Ratcellular response to amino acid stimulus acts_upstream_of_or_withinIEAUniProtKB:P15209 and ensembl:ENSMUSP000000787571600115GO_REF:0000107EnsemblGO_REF:0000107
Ntrk2Ratcellular response to amino acid stimulus acts_upstream_of_or_withinISONtrk2 (Mus musculus)1624291 PMID:25542970RGDPMID:25542970
Ntrk2Ratcellular response to brain-derived neurotrophic factor stimulus  IEP 8657122 RGD 
Ntrk2Ratcellular response to brain-derived neurotrophic factor stimulus involved_inIBAPANTHER:PTN002814914 and Ntrk2 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ntrk2Ratcellular response to nerve growth factor stimulus  IEP 8657122 RGD 
Ntrk2Ratcellular response to tumor necrosis factor  IEP 8657122 RGD 
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Cellular Component
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Ntrk2Rataxon located_inIDA 13673858PMID:21775604UniProt 
Ntrk2Rataxon  IDA 1626129 RGD 
Ntrk2Rataxon located_inIEAUniProtKB-SubCell:SL-02791600115GO_REF:0000044UniProtGO_REF:0000044
Ntrk2Rataxon is_active_inIBAMGI:97383 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ntrk2Rataxon terminus is_active_inIBAMGI:97384 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ntrk2Rataxon terminus  IDA 2303068 RGD 
Ntrk2Ratcell projection located_inIEAUniProtKB-KW:KW-09661600115GO_REF:0000043UniProtGO_REF:0000043
Ntrk2Ratcell surface  IDA 1626129 RGD 
Ntrk2Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Ntrk2Ratcytosol located_inIEAUniProtKB:P15209 and ensembl:ENSMUSP000000787571600115GO_REF:0000107EnsemblGO_REF:0000107
Ntrk2Ratcytosol located_inISONtrk2 (Mus musculus)1624291 PMID:11083466RGDPMID:11083466
Ntrk2Ratdendrite located_inIDA 13673858PMID:21775604UniProt 
Ntrk2Ratdendrite  IDA 1626129 RGD 
Ntrk2Ratdendrite located_inIEAUniProtKB-SubCell:SL-02831600115GO_REF:0000044UniProtGO_REF:0000044
Ntrk2Ratdendritic spine is_active_inIBAPANTHER:PTN008618235 and Ntrk2 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ntrk2Ratdendritic spine  IDA 2303068 RGD 
Ntrk2Ratearly endosome located_inIEAUniProtKB:P15209 and ensembl:ENSMUSP000000787571600115GO_REF:0000107EnsemblGO_REF:0000107
Ntrk2Ratearly endosome located_inISONtrk2 (Mus musculus)1624291 PMID:21849472RGDPMID:21849472
Ntrk2Ratearly endosome located_inISSUniProtKB:P152091600115GO_REF:0000024UniProtGO_REF:0000024
Ntrk2Ratearly endosome membrane located_inIEAUniProtKB-SubCell:SL-00931600115GO_REF:0000044UniProtGO_REF:0000044
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Molecular Function
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Ntrk2RatATP binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
Ntrk2RatATP binding enablesIEAInterPro:IPR000719 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Ntrk2RatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Ntrk2RatATP binding enablesIEAInterPro:IPR0207771600115GO_REF:0000002InterProGO_REF:0000002
Ntrk2Ratbrain-derived neurotrophic factor binding enablesIDA 8554777PMID:1645620UniProt 
Ntrk2Ratbrain-derived neurotrophic factor binding  IMP 1626130 RGD 
Ntrk2Ratbrain-derived neurotrophic factor binding  IDA 1626131 RGD 
Ntrk2Ratbrain-derived neurotrophic factor binding enablesISONtrk2 (Mus musculus)1624291 PMID:1645620RGDPMID:1645620
Ntrk2Ratbrain-derived neurotrophic factor binding enablesIBAMGI:97384 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ntrk2Ratbrain-derived neurotrophic factor binding enablesIEAUniProtKB:P15209 and ensembl:ENSMUSP000000787571600115GO_REF:0000107EnsemblGO_REF:0000107
Ntrk2Ratbrain-derived neurotrophic factor receptor activity enablesISONTRK2 (Homo sapiens)1624291 PMID:15494731RGDPMID:15494731
Ntrk2Ratbrain-derived neurotrophic factor receptor activity enablesIEAUniProtKB:Q16620 and ensembl:ENSP000002771201600115GO_REF:0000107EnsemblGO_REF:0000107
Ntrk2Ratbrain-derived neurotrophic factor receptor activity enablesIEAUniProtKB:P15209 and ensembl:ENSMUSP000000787571600115GO_REF:0000107EnsemblGO_REF:0000107
Ntrk2Ratbrain-derived neurotrophic factor receptor activity enablesIBAMGI:97384 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ntrk2Ratbrain-derived neurotrophic factor receptor activity enablesISONtrk2 (Mus musculus)1624291 PMID:16801538RGDPMID:16801538
Ntrk2Ratbrain-derived neurotrophic factor receptor activity enablesIDA 8554777PMID:1645620UniProt 
Ntrk2Ratbrain-derived neurotrophic factor receptor activity enablesIDA 8554094PMID:8627351UniProt 
Ntrk2Ratkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
Ntrk2Ratneurotrophin binding enablesISSUniProtKB:Q166201600115GO_REF:0000024UniProtGO_REF:0000024
Ntrk2Ratneurotrophin binding enablesIEAUniProtKB:Q16620 and ensembl:ENSP000002771201600115GO_REF:0000107EnsemblGO_REF:0000107
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RGD Manual Annotations


  
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Ntrk2Ratbrain-derived neurotrophic factor signaling pathway  ISONTRK2 (Homo sapiens)11062158 RGD 

Imported Annotations - KEGG (archival)

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Ntrk2Ratmitogen activated protein kinase signaling pathway   IEA 6907045 KEGGrno:04010
Ntrk2Ratneurotrophic factor signaling pathway  IEA 6907045 KEGGrno:04722

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Reference Title
Reference Citation
1. Co-localization of caldesmon and calponin with cortical afferents, metabotropic glutamate and neurotrophic receptors in the lateral and central nuclei of the amygdala. Agassandian K and Cassell MD, Brain Res. 2008 Aug 21;1226:39-55. Epub 2008 Jun 11.
2. Effects of Morphine and Maternal Care on Behaviors and Protein Expression of Male Offspring. Akbarabadi A, etal., Neuroscience. 2021 Jul 1;466:58-76. doi: 10.1016/j.neuroscience.2021.04.011. Epub 2021 Apr 26.
3. A Small Molecule TrkB Neurotrophin Receptor Partial Agonist as Possible Treatment for Experimental Nonarteritic Anterior Ischemic Optic Neuropathy. Ali Shariati M, etal., Curr Eye Res. 2018 Dec;43(12):1489-1499. doi: 10.1080/02713683.2018.1508726. Epub 2018 Oct 1.
4. Association of contextual cues with morphine reward increases neural and synaptic plasticity in the ventral hippocampus of rats. Alvandi MS, etal., Addict Biol. 2017 Nov;22(6):1883-1894. doi: 10.1111/adb.12547. Epub 2017 Sep 22.
5. 7,8-dihydroxyflavone, a TrkB receptor agonist, blocks long-term spatial memory impairment caused by immobilization stress in rats. Andero R, etal., Hippocampus. 2010 Dec 6.
6. SIPA1L2 controls trafficking and local signaling of TrkB-containing amphisomes at presynaptic terminals. Andres-Alonso M, etal., Nat Commun. 2019 Nov 29;10(1):5448. doi: 10.1038/s41467-019-13224-z.
7. Localization of brain-derived neurotrophic factor and TrkB receptors to postsynaptic densities of adult rat cerebral cortex. Aoki C, etal., J Neurosci Res. 2000 Feb 1;59(3):454-63. doi: 10.1002/(SICI)1097-4547(20000201)59:3<454::AID-JNR21>3.0.CO;2-H.
8. Temporal and spatial differences in expression of TrkB isoforms in rat retina during constant light exposure. Asai N, etal., Exp Eye Res. 2007 Sep;85(3):346-55. Epub 2007 Jun 15.
9. The TrkB-Shc site signals neuronal survival and local axon growth via MEK and P13-kinase. Atwal JK, etal., Neuron. 2000 Aug;27(2):265-77.
10. Neurotrophic tyrosine kinase receptor B/neurotrophin 4 signaling axis is perturbed in clinical and experimental pulmonary fibrosis. Avcuoglu S, etal., Am J Respir Cell Mol Biol. 2011 Oct;45(4):768-80. Epub 2011 Feb 17.
11. Patterns of expression of brain-derived neurotrophic factor and tyrosine kinase B mRNAs and distribution and ultrastructural localization of their proteins in the visual pathway of the adult rat. Avwenagha O, etal., Neuroscience. 2006 Jul 7;140(3):913-28. Epub 2006 Apr 19.
12. Up-regulation of high-affinity neurotrophin receptor, trk B-like protein on western blots of rat cortex after chronic ethanol treatment. Baek JK, etal., Brain Res Mol Brain Res. 1996 Aug;40(1):161-4. doi: 10.1016/0169-328x(96)00109-x.
13. An agonistic TrkB mAb causes sustained TrkB activation, delays RGC death, and protects the retinal structure in optic nerve axotomy and in glaucoma. Bai Y, etal., Invest Ophthalmol Vis Sci. 2010 Sep;51(9):4722-31. Epub 2010 Mar 31.
14. Effects of cocaine base paste on anxiety-like behavior and immediate-early gene expression in nucleus accumbens and medial prefrontal cortex of female mice. Berardino BG, etal., Psychopharmacology (Berl). 2019 Dec;236(12):3525-3539. doi: 10.1007/s00213-019-05321-0. Epub 2019 Jul 6.
15. Association of specific haplotypes of neurotrophic tyrosine kinase receptor 2 gene (NTRK2) with vulnerability to nicotine dependence in African-Americans and European-Americans. Beuten J, etal., Biol Psychiatry. 2007 Jan 1;61(1):48-55. doi: 10.1016/j.biopsych.2006.02.023. Epub 2006 May 19.
16. Chronic binge-like alcohol consumption in adolescence causes depression-like symptoms possibly mediated by the effects of BDNF on neurogenesis. Briones TL and Woods J, Neuroscience. 2013 Dec 19;254:324-34. doi: 10.1016/j.neuroscience.2013.09.031. Epub 2013 Sep 25.
17. Reduction in voltage-gated K+ channel activity in primary sensory neurons in painful diabetic neuropathy: role of brain-derived neurotrophic factor. Cao XH, etal., J Neurochem. 2010 Sep 1;114(5):1460-75. Epub 2010 Jun 24.
18. Hippocampal neurogenesis interferes with extinction and reinstatement of methamphetamine-associated reward memory in mice. Che X, etal., Neuropharmacology. 2021 Sep 15;196:108717. doi: 10.1016/j.neuropharm.2021.108717. Epub 2021 Jul 15.
19. Cdk5 is involved in BDNF-stimulated dendritic growth in hippocampal neurons. Cheung ZH, etal., PLoS Biol. 2007 Apr;5(4):e63.
20. Increased BDNF levels and NTRK2 gene association suggest a disruption of BDNF/TrkB signaling in autism. Correia CT, etal., Genes Brain Behav. 2010 Oct;9(7):841-8. doi: 10.1111/j.1601-183X.2010.00627.x. Epub 2010 Aug 19.
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PMID:1846020   PMID:8106527   PMID:8402890   PMID:9856458   PMID:10196222   PMID:10486198   PMID:10516311   PMID:10571233   PMID:10595510   PMID:10908605   PMID:11083466   PMID:11248116  
PMID:11251075   PMID:11389170   PMID:11738045   PMID:11860191   PMID:12049326   PMID:12367511   PMID:12373512   PMID:12471037   PMID:12605901   PMID:12646573   PMID:12796784   PMID:12798291  
PMID:12858046   PMID:14603320   PMID:14642449   PMID:15014113   PMID:15231696   PMID:15282267   PMID:15329723   PMID:15372074   PMID:15376326   PMID:15384067   PMID:15507485   PMID:15518646  
PMID:15601948   PMID:15665879   PMID:15703388   PMID:15721221   PMID:16173113   PMID:16175575   PMID:16264195   PMID:16357196   PMID:16399679   PMID:16500620   PMID:16612579   PMID:16769156  
PMID:16781670   PMID:16819522   PMID:16877354   PMID:16996037   PMID:17072373   PMID:17168119   PMID:17394529   PMID:17445239   PMID:17463054   PMID:17492691   PMID:17584746   PMID:17647101  
PMID:17828750   PMID:17959796   PMID:17967490   PMID:18063479   PMID:18063676   PMID:18338800   PMID:18353779   PMID:18381284   PMID:18420184   PMID:18432062   PMID:18446825   PMID:18474605  
PMID:18511210   PMID:18515408   PMID:18550280   PMID:18559670   PMID:18957307   PMID:19036963   PMID:19141250   PMID:19159346   PMID:19179431   PMID:19222991   PMID:19224567   PMID:19332029  
PMID:19351881   PMID:19424097   PMID:19460344   PMID:19546592   PMID:19549834   PMID:19551874   PMID:19583705   PMID:19585233   PMID:19671665   PMID:19686240   PMID:19726361   PMID:20047714  
PMID:20064930   PMID:20146080   PMID:20333308   PMID:20407211   PMID:20610389   PMID:20615547   PMID:20635439   PMID:21044076   PMID:21187387   PMID:21210848   PMID:21279681   PMID:21474450  
PMID:21756980   PMID:21849472   PMID:21945647   PMID:21946312   PMID:22022509   PMID:22128160   PMID:22345308   PMID:22374757   PMID:22563458   PMID:22649026   PMID:22678720   PMID:22710915  
1 to 10 of 20 rows



Ntrk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8175,560,558 - 5,875,899 (-)NCBIGRCr8
mRatBN7.2175,558,992 - 5,870,299 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl175,559,043 - 5,869,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx175,584,315 - 5,894,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,120,448 - 7,429,363 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0175,580,732 - 5,891,094 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0175,934,651 - 6,245,778 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,933,729 - 6,244,676 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0178,156,432 - 8,464,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41711,494,463 - 11,811,654 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11711,494,462 - 11,811,645 (-)NCBI
Celera175,673,895 - 6,828,108 (-)NCBICelera
Cytogenetic Map17p14NCBI
NTRK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38984,668,522 - 85,027,054 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl984,668,375 - 85,095,751 (+)EnsemblGRCh38hg38GRCh38
GRCh37987,283,437 - 87,641,969 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36986,473,286 - 86,828,325 (+)NCBINCBI36Build 36hg18NCBI36
Build 34984,514,246 - 84,866,963NCBI
Celera957,854,390 - 58,209,019 (+)NCBICelera
Cytogenetic Map9q21.33NCBI
HuRef957,108,647 - 57,463,914 (+)NCBIHuRef
CHM1_1987,429,973 - 87,785,074 (+)NCBICHM1_1
T2T-CHM13v2.0996,818,888 - 97,177,857 (+)NCBIT2T-CHM13v2.0
Ntrk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,954,363 - 59,281,782 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,954,383 - 59,281,784 (+)EnsemblGRCm39 Ensembl
GRCm381358,806,472 - 59,133,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,806,569 - 59,133,970 (+)EnsemblGRCm38mm10GRCm38
MGSCv371358,907,957 - 59,231,337 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361358,816,219 - 59,139,599 (+)NCBIMGSCv36mm8
Celera1359,869,829 - 60,184,466 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1331.2NCBI
Ntrk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554322,288,898 - 2,630,878 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554322,284,283 - 2,629,631 (-)NCBIChiLan1.0ChiLan1.0
NTRK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,829,141 - 84,374,078 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1983,835,183 - 84,380,018 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0939,663,986 - 40,208,770 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1984,022,677 - 84,378,307 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl984,021,837 - 84,372,678 (+)Ensemblpanpan1.1panPan2
NTRK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1174,447,927 - 74,777,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl174,449,060 - 74,777,032 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha175,211,260 - 75,538,451 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0174,754,263 - 75,081,259 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl174,755,372 - 75,083,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1174,562,918 - 74,890,457 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0174,331,860 - 74,658,907 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0175,035,216 - 75,362,564 (-)NCBIUU_Cfam_GSD_1.0
Ntrk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947121,116,646 - 121,472,444 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936680267,596 - 615,928 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936680267,850 - 621,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTRK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1030,033,405 - 30,429,882 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11030,030,050 - 30,429,938 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21034,211,939 - 34,350,822 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NTRK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11295,477,612 - 95,836,734 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1295,479,447 - 95,620,364 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603883,830,767 - 84,200,895 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntrk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248098,276,951 - 8,616,765 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248098,274,736 - 8,622,287 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ntrk2
1648 total Variants

Predicted Target Of
Summary Value
Count of predictions:545
Count of miRNA genes:254
Interacting mature miRNAs:310
Transcripts:ENSRNOT00000042145
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat

1 to 10 of 20 rows
D17Wox10  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0178,464,362 - 8,464,522NCBIRnor5.0
RGSC_v3.41711,811,510 - 11,811,669RGDRGSC3.4
RGSC_v3.11711,811,510 - 11,811,669RGD
RH 3.4 Map1753.5RGD
RH 3.4 Map1753.5UniSTS
RH 2.0 Map1743.9RGD
Cytogenetic Map17p14UniSTS
D17Rat4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,705,480 - 5,705,653 (+)MAPPERmRatBN7.2
Rnor_6.0176,081,441 - 6,081,613NCBIRnor6.0
Rnor_5.0178,303,029 - 8,303,201UniSTSRnor5.0
RGSC_v3.41711,642,374 - 11,642,546UniSTSRGSC3.4
RGSC_v3.41711,642,373 - 11,642,546RGDRGSC3.4
RGSC_v3.11711,642,374 - 11,642,546RGD
Celera175,819,628 - 5,819,800UniSTS
RH 3.4 Map1753.6RGD
RH 3.4 Map1753.6UniSTS
RH 2.0 Map1741.7RGD
SHRSP x BN Map175.9601RGD
Cytogenetic Map17p14UniSTS
D17Got7  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8175,852,358 - 5,852,472 (+)Marker Load Pipeline
mRatBN7.2175,846,851 - 5,846,967 (+)MAPPERmRatBN7.2
Rnor_6.0176,222,036 - 6,222,149NCBIRnor6.0
Rnor_5.0178,441,931 - 8,442,044UniSTSRnor5.0
RGSC_v3.41711,789,390 - 11,789,504RGDRGSC3.4
RGSC_v3.41711,789,391 - 11,789,504UniSTSRGSC3.4
RGSC_v3.11711,789,391 - 11,789,504RGD
Celera175,959,620 - 5,959,733UniSTS
RH 3.4 Map1773.7UniSTS
RH 3.4 Map1773.7RGD
RH 2.0 Map1738.2RGD
Cytogenetic Map17p14UniSTS
D17Arb15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,868,983 - 5,869,137 (+)MAPPERmRatBN7.2
Rnor_6.0176,244,475 - 6,244,628NCBIRnor6.0
Rnor_5.0178,464,370 - 8,464,523UniSTSRnor5.0
RGSC_v3.41711,811,516 - 11,811,669RGDRGSC3.4
RGSC_v3.41711,811,517 - 11,811,670UniSTSRGSC3.4
RGSC_v3.11711,811,516 - 11,811,669RGD
Celera175,981,709 - 5,981,850UniSTS
Cytogenetic Map17p14UniSTS
BF388200  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,683,917 - 5,684,106 (+)MAPPERmRatBN7.2
Rnor_6.0176,060,589 - 6,060,777NCBIRnor6.0
Rnor_5.0178,282,177 - 8,282,365UniSTSRnor5.0
RGSC_v3.41711,620,134 - 11,620,322UniSTSRGSC3.4
Celera175,798,149 - 5,798,337UniSTS
RH 3.4 Map1773.7UniSTS
Cytogenetic Map17p14UniSTS
RH135318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,835,067 - 5,835,260 (+)MAPPERmRatBN7.2
Rnor_6.0176,210,245 - 6,210,437NCBIRnor6.0
Rnor_5.0178,430,140 - 8,430,332UniSTSRnor5.0
RGSC_v3.41711,777,573 - 11,777,765UniSTSRGSC3.4
Celera175,947,917 - 5,948,109UniSTS
RH 3.4 Map1753.5UniSTS
Cytogenetic Map17p14UniSTS
RH140355  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,559,068 - 5,559,315 (+)MAPPERmRatBN7.2
Rnor_6.0175,934,716 - 5,934,962NCBIRnor6.0
Rnor_5.0178,156,458 - 8,156,704UniSTSRnor5.0
RGSC_v3.41711,494,489 - 11,494,735UniSTSRGSC3.4
Celera175,673,921 - 5,674,167UniSTS
Cytogenetic Map17p14UniSTS
RH129925  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,739,292 - 5,739,485 (+)MAPPERmRatBN7.2
Rnor_6.0176,114,720 - 6,114,912NCBIRnor6.0
Rnor_5.0178,335,513 - 8,335,705UniSTSRnor5.0
RGSC_v3.41711,676,780 - 11,676,972UniSTSRGSC3.4
Celera175,852,552 - 5,852,744UniSTS
RH 3.4 Map1754.5UniSTS
Cytogenetic Map17p14UniSTS
RH133106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,743,832 - 5,744,018 (+)MAPPERmRatBN7.2
Rnor_6.0176,119,115 - 6,119,300NCBIRnor6.0
Rnor_5.0178,339,908 - 8,340,093UniSTSRnor5.0
RGSC_v3.41711,681,320 - 11,681,505UniSTSRGSC3.4
Celera175,857,092 - 5,857,277UniSTS
RH 3.4 Map1773.3UniSTS
Cytogenetic Map17p14UniSTS
BF386266  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,715,697 - 5,715,860 (+)MAPPERmRatBN7.2
Rnor_6.0176,091,659 - 6,091,821NCBIRnor6.0
Rnor_5.0178,312,470 - 8,312,632UniSTSRnor5.0
RGSC_v3.41711,652,039 - 11,652,201UniSTSRGSC3.4
Celera175,828,923 - 5,829,085UniSTS
RH 3.4 Map1773.4UniSTS
Cytogenetic Map17p14UniSTS
BE097527  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,703,161 - 5,703,376 (+)MAPPERmRatBN7.2
Rnor_6.0176,079,122 - 6,079,336NCBIRnor6.0
Rnor_5.0178,300,710 - 8,300,924UniSTSRnor5.0
RGSC_v3.41711,640,055 - 11,640,269UniSTSRGSC3.4
Celera175,817,362 - 5,817,576UniSTS
RH 3.4 Map1772.8UniSTS
Cytogenetic Map17p14UniSTS
RH138199  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,667,249 - 5,667,431 (+)MAPPERmRatBN7.2
Rnor_6.0176,043,939 - 6,044,120NCBIRnor6.0
Rnor_5.0178,265,619 - 8,265,800UniSTSRnor5.0
RGSC_v3.41711,603,648 - 11,603,829UniSTSRGSC3.4
Celera175,781,473 - 5,781,654UniSTS
RH 3.4 Map1753.4UniSTS
Cytogenetic Map17p14UniSTS
RH138872  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,701,329 - 5,701,568 (+)MAPPERmRatBN7.2
Rnor_6.0176,077,290 - 6,077,528NCBIRnor6.0
Rnor_5.0178,298,878 - 8,299,116UniSTSRnor5.0
RGSC_v3.41711,638,223 - 11,638,461UniSTSRGSC3.4
Celera175,815,530 - 5,815,768UniSTS
RH 3.4 Map1752.5UniSTS
Cytogenetic Map17p14UniSTS
RH139520  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,559,212 - 5,559,432 (+)MAPPERmRatBN7.2
Rnor_6.0175,934,860 - 5,935,079NCBIRnor6.0
Rnor_5.0178,156,602 - 8,156,821UniSTSRnor5.0
RGSC_v3.41711,494,633 - 11,494,852UniSTSRGSC3.4
Celera175,674,065 - 5,674,284UniSTS
RH 3.4 Map1755.0UniSTS
Cytogenetic Map17p14UniSTS
BF390725  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,748,331 - 5,748,504 (+)MAPPERmRatBN7.2
Rnor_6.0176,123,562 - 6,123,734NCBIRnor6.0
Rnor_5.0178,344,193 - 8,344,365UniSTSRnor5.0
RGSC_v3.41711,686,081 - 11,686,253UniSTSRGSC3.4
Celera175,861,597 - 5,861,769UniSTS
RH 3.4 Map1773.7UniSTS
Cytogenetic Map17p14UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 78 77 46 25 46 6 205 97 93 45 60 31


1 to 24 of 24 rows
RefSeq Transcripts NM_001163168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY265419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY266346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC855568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M55291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M55292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M55293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 24 of 24 rows

Ensembl Acc Id: ENSRNOT00000042145   ⟹   ENSRNOP00000045635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl175,559,043 - 5,869,121 (-)Ensembl
Rnor_6.0 Ensembl175,934,690 - 6,244,612 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082611   ⟹   ENSRNOP00000073595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl175,559,043 - 5,869,121 (-)Ensembl
Rnor_6.0 Ensembl175,933,729 - 6,244,676 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090914   ⟹   ENSRNOP00000070128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl175,739,171 - 5,869,136 (-)Ensembl
Rnor_6.0 Ensembl176,114,598 - 6,244,627 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100565   ⟹   ENSRNOP00000082641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl175,784,667 - 5,869,136 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101783   ⟹   ENSRNOP00000078799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl175,784,517 - 5,869,136 (-)Ensembl
RefSeq Acc Id: NM_001163168   ⟹   NP_001156640
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,744,682 - 5,874,628 (-)NCBI
mRatBN7.2175,739,171 - 5,869,126 (-)NCBI
Rnor_6.0176,114,598 - 6,244,627 (-)NCBI
Rnor_5.0178,156,432 - 8,464,522 (-)NCBI
RGSC_v3.41711,494,463 - 11,811,654 (-)RGD
Celera175,852,430 - 6,828,108 (-)NCBI
Sequence:
RefSeq Acc Id: NM_012731   ⟹   NP_036863
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,564,570 - 5,874,628 (-)NCBI
mRatBN7.2175,559,043 - 5,869,126 (-)NCBI
Rnor_6.0175,934,690 - 6,244,612 (-)NCBI
Rnor_5.0178,156,432 - 8,464,522 (-)NCBI
RGSC_v3.41711,494,463 - 11,811,654 (-)RGD
Celera175,673,895 - 6,828,108 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253507   ⟹   XP_006253569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,689,411 - 5,874,756 (-)NCBI
mRatBN7.2175,683,893 - 5,868,087 (-)NCBI
Rnor_6.0176,060,564 - 6,244,716 (-)NCBI
Rnor_5.0178,156,432 - 8,464,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771425   ⟹   XP_008769647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,560,558 - 5,874,756 (-)NCBI
mRatBN7.2175,560,666 - 5,869,126 (-)NCBI
Rnor_6.0175,934,651 - 6,244,725 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771426   ⟹   XP_008769648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,560,558 - 5,875,798 (-)NCBI
mRatBN7.2175,560,666 - 5,870,171 (-)NCBI
Rnor_6.0175,934,651 - 6,245,662 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771427   ⟹   XP_008769649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,689,411 - 5,874,756 (-)NCBI
mRatBN7.2175,689,623 - 5,868,087 (-)NCBI
Rnor_6.0176,060,564 - 6,244,715 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600456   ⟹   XP_017455945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,560,558 - 5,875,801 (-)NCBI
mRatBN7.2175,560,666 - 5,870,299 (-)NCBI
Rnor_6.0175,934,651 - 6,245,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095370   ⟹   XP_038951298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,560,558 - 5,874,971 (-)NCBI
mRatBN7.2175,560,666 - 5,869,466 (-)NCBI
RefSeq Acc Id: XM_063276069   ⟹   XP_063132139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,560,558 - 5,875,798 (-)NCBI
RefSeq Acc Id: XM_063276070   ⟹   XP_063132140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,560,558 - 5,875,816 (-)NCBI
RefSeq Acc Id: XM_063276071   ⟹   XP_063132141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,560,558 - 5,872,206 (-)NCBI
RefSeq Acc Id: XM_063276072   ⟹   XP_063132142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,744,684 - 5,875,899 (-)NCBI
RefSeq Acc Id: XM_063276073   ⟹   XP_063132143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,744,684 - 5,875,816 (-)NCBI
RefSeq Acc Id: XM_063276074   ⟹   XP_063132144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,744,684 - 5,874,957 (-)NCBI
1 to 30 of 31 rows
Protein RefSeqs NP_001156640 (Get FASTA)   NCBI Sequence Viewer  
  NP_036863 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253569 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769647 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769648 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769649 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455945 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951298 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132139 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132140 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132141 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132142 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132143 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132144 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42279 (Get FASTA)   NCBI Sequence Viewer  
  AAA42280 (Get FASTA)   NCBI Sequence Viewer  
  AAA42281 (Get FASTA)   NCBI Sequence Viewer  
  AAP21832 (Get FASTA)   NCBI Sequence Viewer  
  AAP46138 (Get FASTA)   NCBI Sequence Viewer  
  AGR50959 (Get FASTA)   NCBI Sequence Viewer  
  EDL93899 (Get FASTA)   NCBI Sequence Viewer  
  EDL93900 (Get FASTA)   NCBI Sequence Viewer  
  EDL93901 (Get FASTA)   NCBI Sequence Viewer  
  EDL93902 (Get FASTA)   NCBI Sequence Viewer  
  EDL93903 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000045635
  ENSRNOP00000045635.1
  ENSRNOP00000070128
  ENSRNOP00000070128.1
  ENSRNOP00000073595
1 to 30 of 31 rows
1 to 5 of 19 rows
1 to 5 of 19 rows
RefSeq Acc Id: NP_036863   ⟸   NM_012731
- Peptide Label: isoform 1 precursor
- UniProtKB: Q63605 (UniProtKB/Swiss-Prot),   Q63606 (UniProtKB/Swiss-Prot),   Q63604 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156640   ⟸   NM_001163168
- Peptide Label: isoform 2 precursor
- UniProtKB: A6KAJ1 (UniProtKB/TrEMBL),   A0A8I5ZVM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253569   ⟸   XM_006253507
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZVM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769648   ⟸   XM_008771426
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K5X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769647   ⟸   XM_008771425
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K5X6 (UniProtKB/TrEMBL)
- Sequence:
Ig-like   Ig-like C2-type   LRRCT   LRRNT   Protein kinase

Name Modeler Protein Id AA Range Protein Structure
AF-Q63604-F1-model_v2 AlphaFold Q63604 1-821 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 71 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-10400 BioCyc
Ensembl Genes ENSRNOG00000018839 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000042145 ENTREZGENE
  ENSRNOT00000042145.3 UniProtKB/Swiss-Prot
  ENSRNOT00000082611 ENTREZGENE
  ENSRNOT00000090914 ENTREZGENE
  ENSRNOT00000090914.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  3.80.10.10 UniProtKB/Swiss-Prot
  Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Leu-rich_rpt UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
  LRRNT UniProtKB/Swiss-Prot
  NTRK_C2 UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  RTK UniProtKB/Swiss-Prot
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot
  Tyr_kin_neurotrophic_rcpt_2 UniProtKB/Swiss-Prot
  Tyr_kinase_AS UniProtKB/Swiss-Prot
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot
  Tyr_kinase_NGF_rcpt UniProtKB/Swiss-Prot
  Tyr_kinase_rcpt_2_CS UniProtKB/Swiss-Prot
KEGG Report rno:25054 UniProtKB/Swiss-Prot
NCBI Gene 25054 ENTREZGENE
PANTHER BDNF/NT-3 GROWTH FACTORS RECEPTOR UniProtKB/Swiss-Prot
  TYROSINE-PROTEIN KINASE RECEPTOR UniProtKB/Swiss-Prot
Pfam I-set UniProtKB/Swiss-Prot
  LRR_8 UniProtKB/Swiss-Prot
  Pkinase_Tyr UniProtKB/Swiss-Prot
  TPKR_C2 UniProtKB/Swiss-Prot
1 to 40 of 71 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-14 Ntrk2  neurotrophic receptor tyrosine kinase 2  Ntrk2  neurotrophic tyrosine kinase, receptor, type 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Ntrk2  neurotrophic tyrosine kinase, receptor, type 2    Neural receptor protein-tyrosine kinase (trkB)  Name updated 625702 APPROVED
2002-06-10 Ntrk2  Neural receptor protein-tyrosine kinase (trkB)      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_function responsible for tyrosine phosphorylation of voltage-gated potassium channel Kv1.3 633084
gene_regulation activated by GM1 ganglioside 727459