NTRK2 (neurotrophic receptor tyrosine kinase 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NTRK2 (neurotrophic receptor tyrosine kinase 2) Chlorocebus sabaeus
Analyze
Symbol: NTRK2
Name: neurotrophic receptor tyrosine kinase 2
RGD ID: 18702873
Description: ENCODES a protein that exhibits brain-derived neurotrophic factor binding (ortholog); neurotrophin receptor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN brain-derived neurotrophic factor receptor signaling pathway (ortholog); cellular response to brain-derived neurotrophic factor stimulus (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); alcohol withdrawal syndrome (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BDNF/NT-3 growth factors receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11295,477,612 - 95,836,734 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1295,479,447 - 95,620,364 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603883,830,767 - 84,200,895 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 101 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NTRK2Green Monkeyalcohol dependence  ISONTRK2 (Homo sapiens)9068941DNA:SNPs: :rs993315 and rs10780691RGDPMID:17200667 and REF_RGD_ID:408395149
NTRK2Green Monkeyalcohol dependence onsetISONTRK2 (Homo sapiens)9068941DNA:SNP: :rs1439047RGDPMID:28512340 and REF_RGD_ID:596933091
NTRK2Green Monkeyalcohol use disorder treatmentISONtrk2 (Rattus norvegicus)9068941 RGDPMID:33919862 and REF_RGD_ID:596933362
NTRK2Green Monkeyalcohol use disorder  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:32206827 more ...
NTRK2Green Monkeyalcohol use disorder  ISONtrk2 (Mus musculus)9068941associated with Prenatal Exposure Delayed Effects and anxiety disorder:protein:decreased acetylation:brainRGDPMID:30016666 and REF_RGD_ID:401959614
NTRK2Green Monkeyalcohol withdrawal syndrome  ISONtrk2 (Rattus norvegicus)9068941protein:increased phopsphorylation more ...RGDPMID:26659122 and REF_RGD_ID:596936245
NTRK2Green Monkeyalcohol withdrawal syndrome treatmentISONtrk2 (Rattus norvegicus)9068941associated with Binge DrinkingRGDPMID:24076087 more ...
NTRK2Green MonkeyAlcohol-Related Disorders  ISONtrk2 (Rattus norvegicus)9068941protein:altered expression:brainRGDPMID:15188276 more ...
NTRK2Green MonkeyAlcoholic Intoxication  ISONtrk2 (Mus musculus)9068941mRNA:increased expression:basal nucleus and cerebral cortexRGDPMID:24061482 and REF_RGD_ID:405850213
NTRK2Green MonkeyAlzheimer's disease  ISONtrk2 (Mus musculus)9068941 RGDPMID:21900882 and REF_RGD_ID:5684548
NTRK2Green MonkeyAlzheimer's disease treatmentISONtrk2 (Rattus norvegicus)9068941 RGDPMID:24877042 more ...
NTRK2Green MonkeyAlzheimer's disease  ISONTRK2 (Homo sapiens)9068941sporadic AD and DNA:SNP:intron:rs2289656RGDPMID:18780967 and REF_RGD_ID:5508228
NTRK2Green Monkeyamphetamine abuse  ISONtrk2 (Rattus norvegicus)9068941mRNA:increased expression:nucleus accumbensRGDPMID:33961872 and REF_RGD_ID:596936246
NTRK2Green Monkeyamphetamine abuse  ISONtrk2 (Rattus norvegicus)9068941protein:increased expression:frontal cortex and striatumRGDPMID:31693929 and REF_RGD_ID:597015747
NTRK2Green Monkeyamphetamine abuse  ISONtrk2 (Rattus norvegicus)9068941protein:altered expression:nucleus accumbens and ventral tegmental areaRGDPMID:37904065 and REF_RGD_ID:596938173
NTRK2Green Monkeyamphetamine abuse  ISONtrk2 (Mus musculus)9068941 RGDPMID:34273388 and REF_RGD_ID:596938171
NTRK2Green MonkeyAnhedonia treatmentISONtrk2 (Rattus norvegicus)9068941associated with sciatic neuropathyRGDPMID:29882089 and REF_RGD_ID:596948432
NTRK2Green Monkeyanxiety disorder onsetISONtrk2 (Mus musculus)9068941associated with alcohol withdrawal syndromeRGDPMID:32895785 and REF_RGD_ID:596933355
NTRK2Green Monkeyanxiety disorder amelioratesISONtrk2 (Rattus norvegicus)9068941associated with alcohol use disorderRGDPMID:18322102 and REF_RGD_ID:401938616
NTRK2Green Monkeyattention deficit hyperactivity disorder treatmentISONtrk2 (Rattus norvegicus)9068941 RGDPMID:25061595 and REF_RGD_ID:10059388
1 to 20 of 101 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NTRK2Green Monkeyautism spectrum disorder  ISONTRK2 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868 and PMID:28492532
NTRK2Green Monkeydevelopmental and epileptic encephalopathy 58  ISONTRK2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
NTRK2Green MonkeyDevelopmental Disease  ISONTRK2 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental disorderClinVarPMID:25741868 and PMID:28492532
NTRK2Green Monkeygenetic disease  ISONTRK2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
NTRK2Green Monkeyneuroblastoma  ISONTRK2 (Homo sapiens)8554872ClinVar Annotator: match by term: NeuroblastomaClinVarPMID:26822237
NTRK2Green Monkeyobesity  ISONTRK2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868
NTRK2Green MonkeyObesity, Hyperphagia, and Developmental Delay  ISONTRK2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:15494731 more ...
1 to 10 of 10 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NTRK2Green Monkeyautistic disorder  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20662941
NTRK2Green Monkeybipolar disorder  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:19018715
NTRK2Green MonkeyCocaine-Related Disorders  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20826313 and PMID:20947769
NTRK2Green MonkeyDevelopmental Disabilities  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:15494731
NTRK2Green Monkeyhigh grade glioma  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:24705251
NTRK2Green MonkeyHyperkinesis  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20826313 and PMID:20947769
NTRK2Green MonkeyHyperphagia  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:15494731
NTRK2Green MonkeyLewy body dementia  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:19276553
NTRK2Green Monkeymalignant astrocytoma  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:23817572
NTRK2Green Monkeystatus epilepticus  ISONTRK2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:8635431 and PMID:8821376
1 to 10 of 10 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NTRK2Green Monkeydevelopmental and epileptic encephalopathy 58  ISONTRK2 (Homo sapiens)7240710 OMIM 
NTRK2Green MonkeyObesity, Hyperphagia, and Developmental Delay  ISONTRK2 (Homo sapiens)7240710 OMIM 


Biological Process
1 to 20 of 56 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NTRK2Green Monkeybrain-derived neurotrophic factor receptor signaling pathway  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:15654844 and REF_RGD_ID:1626132
NTRK2Green Monkeybrain-derived neurotrophic factor receptor signaling pathway involved_inIEAUniProtKB:P15209 more ...150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeycell surface receptor protein tyrosine kinase signaling pathway involved_inIEAInterPro:IPR020455 and InterPro:IPR020777150520179 InterProGO_REF:0000002
NTRK2Green Monkeycellular response to amino acid stimulus acts_upstream_of_or_withinIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeycellular response to brain-derived neurotrophic factor stimulus  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:21958434 and REF_RGD_ID:8657122
NTRK2Green Monkeycellular response to nerve growth factor stimulus  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:21958434 and REF_RGD_ID:8657122
NTRK2Green Monkeycellular response to tumor necrosis factor  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:21958434 and REF_RGD_ID:8657122
NTRK2Green Monkeycentral nervous system neuron development involved_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeycerebral cortex development involved_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeycircadian rhythm involved_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeyfeeding behavior acts_upstream_of_or_withinIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeyglutamate secretion acts_upstream_of_or_withinIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeylearning involved_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeylong-term memory  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:21136519 and REF_RGD_ID:5684780
NTRK2Green Monkeylong-term synaptic potentiation involved_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeymechanoreceptor differentiation acts_upstream_of_or_withinIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeymyelination in peripheral nervous system acts_upstream_of_or_withinIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeynegative regulation of amyloid-beta formation acts_upstream_of_or_withinIEAUniProtKB:Q16620 and ensembl:ENSP00000277120150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeynegative regulation of anoikis involved_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeynegative regulation of apoptotic process  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:29851427 and REF_RGD_ID:597015746
1 to 20 of 56 rows

Cellular Component
1 to 20 of 28 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NTRK2Green Monkeyaxon  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:17079678 and REF_RGD_ID:1626129
NTRK2Green Monkeyaxon located_inISONtrk2 (Rattus norvegicus)9068941PMID:21775604UniProtPMID:21775604 and REF_RGD_ID:13673858
NTRK2Green Monkeyaxon terminus  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:18582438 and REF_RGD_ID:2303068
NTRK2Green Monkeycell surface  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:17079678 and REF_RGD_ID:1626129
NTRK2Green Monkeycytosol located_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeydendrite  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:17079678 and REF_RGD_ID:1626129
NTRK2Green Monkeydendrite located_inISONtrk2 (Rattus norvegicus)9068941PMID:21775604UniProtPMID:21775604 and REF_RGD_ID:13673858
NTRK2Green Monkeydendritic spine  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:18582438 and REF_RGD_ID:2303068
NTRK2Green Monkeyearly endosome located_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeyendosome located_inIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeyexcitatory synapse  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:17079678 and REF_RGD_ID:1626129
NTRK2Green Monkeyglutamatergic synapse is_active_inISONtrk2 (Rattus norvegicus)9068941PMID:31784514SynGOPMID:31784514 and REF_RGD_ID:405650238
NTRK2Green Monkeyglutamatergic synapse is_active_inISONtrk2 (Rattus norvegicus)9068941PMID:10679783SynGOPMID:10679783 and REF_RGD_ID:155230712
NTRK2Green Monkeyglutamatergic synapse is_active_inISONtrk2 (Rattus norvegicus)9068941PMID:25632160SynGOPMID:25632160 and REF_RGD_ID:12050128
NTRK2Green Monkeygrowth cone  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:17079678 and REF_RGD_ID:1626129
NTRK2Green Monkeymembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
NTRK2Green Monkeyneuronal cell body  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:17079678 and REF_RGD_ID:1626129
NTRK2Green Monkeyperikaryon  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:16626872 and REF_RGD_ID:8655644
NTRK2Green Monkeyperinuclear region of cytoplasm located_inISONtrk2 (Rattus norvegicus)9068941PMID:21775604UniProtPMID:21775604 and REF_RGD_ID:13673858
NTRK2Green Monkeyplasma membrane located_inIEAInterPro:IPR020455 and InterPro:IPR020777150520179 InterProGO_REF:0000002
1 to 20 of 28 rows

Molecular Function
1 to 20 of 36 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NTRK2Green MonkeyATP binding enablesIEAInterPro:IPR020777150520179 InterProGO_REF:0000002
NTRK2Green Monkeybrain-derived neurotrophic factor binding  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:16477614 more ...
NTRK2Green Monkeybrain-derived neurotrophic factor binding enablesIEAUniProtKB:P15209 and ensembl:ENSMUSP00000078757150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeybrain-derived neurotrophic factor receptor activity enablesIEAUniProtKB:P15209 more ...150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeyneurotrophin binding enablesIEAUniProtKB:P15209 more ...150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeyneurotrophin receptor activity  ISONtrk2 (Rattus norvegicus)9068941 RGDPMID:16477614 more ...
NTRK2Green Monkeyneurotrophin receptor activity enablesIEAInterPro:IPR020455150520179 InterProGO_REF:0000002
NTRK2Green Monkeyprotease binding enablesIEAUniProtKB:Q16620 and ensembl:ENSP00000277120150520179 EnsemblGO_REF:0000107
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:Q606109068941 PMID:16801538UniProtPMID:16801538
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:Q6PHU59068941 PMID:21102451 and PMID:24355921IntActPMID:21102451 and PMID:24355921
NTRK2Green Monkeyprotein binding enablesISOPR:Q3UA06 and PR:Q8K0199068941 PMID:11591653MGIPMID:11591653
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:Q99LI89068941 PMID:20956301IntActPMID:20956301
NTRK2Green Monkeyprotein binding enablesISOPR:Q9Z0G09068941 PMID:16819522MGIPMID:16819522
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:P98083 and UniProtKB:Q620779068941 PMID:12367511UniProtPMID:12367511
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:O436399068941PMID:12074588IntActPMID:12074588 and REF_RGD_ID:329955547
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:Q621089068941 PMID:23424281IntActPMID:23424281
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:O085439068941 PMID:19036963BHF-UCLPMID:19036963
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:P372859068941PMID:21775604UniProtPMID:21775604 and REF_RGD_ID:13673858
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:Q9H1569068941 PMID:35840571UniProtPMID:35840571
NTRK2Green Monkeyprotein binding enablesISOUniProtKB:Q162889068941 PMID:35384245IntActPMID:35384245
1 to 20 of 36 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NTRK2Green Monkeybrain-derived neurotrophic factor signaling pathway  ISONTRK2 (Homo sapiens)9068941 RGDPMID:23670594 and REF_RGD_ID:11062158
PMID:15704182   PMID:22301074   PMID:30032202  



NTRK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11295,477,612 - 95,836,734 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1295,479,447 - 95,620,364 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603883,830,767 - 84,200,895 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NTRK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38984,668,522 - 85,027,054 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl984,668,375 - 85,095,751 (+)EnsemblGRCh38hg38GRCh38
GRCh37987,283,437 - 87,641,969 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36986,473,286 - 86,828,325 (+)NCBINCBI36Build 36hg18NCBI36
Build 34984,514,246 - 84,866,963NCBI
Celera957,854,390 - 58,209,019 (+)NCBICelera
Cytogenetic Map9q21.33NCBI
HuRef957,108,647 - 57,463,914 (+)NCBIHuRef
CHM1_1987,429,973 - 87,785,074 (+)NCBICHM1_1
T2T-CHM13v2.0996,818,888 - 97,177,857 (+)NCBIT2T-CHM13v2.0
Ntrk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,954,363 - 59,281,782 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,954,383 - 59,281,784 (+)EnsemblGRCm39 Ensembl
GRCm381358,806,472 - 59,133,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,806,569 - 59,133,970 (+)EnsemblGRCm38mm10GRCm38
MGSCv371358,907,957 - 59,231,337 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361358,816,219 - 59,139,599 (+)NCBIMGSCv36mm8
Celera1359,869,829 - 60,184,466 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1331.2NCBI
Ntrk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8175,560,558 - 5,875,899 (-)NCBIGRCr8
mRatBN7.2175,558,992 - 5,870,299 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl175,559,043 - 5,869,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx175,584,315 - 5,894,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,120,448 - 7,429,363 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0175,580,732 - 5,891,094 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0175,934,651 - 6,245,778 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,933,729 - 6,244,676 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0178,156,432 - 8,464,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41711,494,463 - 11,811,654 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11711,494,462 - 11,811,645 (-)NCBI
Celera175,673,895 - 6,828,108 (-)NCBICelera
Cytogenetic Map17p14NCBI
Ntrk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554322,288,898 - 2,630,878 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554322,284,283 - 2,629,631 (-)NCBIChiLan1.0ChiLan1.0
NTRK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,829,141 - 84,374,078 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1983,835,183 - 84,380,018 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0939,663,986 - 40,208,770 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1984,022,677 - 84,378,307 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl984,021,837 - 84,372,678 (+)Ensemblpanpan1.1panPan2
NTRK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1174,447,927 - 74,777,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl174,449,060 - 74,777,032 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha175,211,260 - 75,538,451 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0174,754,263 - 75,081,259 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl174,755,372 - 75,083,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1174,562,918 - 74,890,457 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0174,331,860 - 74,658,907 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0175,035,216 - 75,362,564 (-)NCBIUU_Cfam_GSD_1.0
Ntrk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947121,116,646 - 121,472,444 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936680267,596 - 615,928 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936680267,850 - 621,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTRK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1030,033,405 - 30,429,882 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11030,030,050 - 30,429,938 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21034,211,939 - 34,350,822 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ntrk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248098,276,951 - 8,616,765 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248098,274,736 - 8,622,287 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in NTRK2
9274 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20


1 to 19 of 19 rows
RefSeq Transcripts XM_007969623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007969624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007969625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007969626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007969627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007969628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037998585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 19 of 19 rows

Ensembl Acc Id: ENSCSAT00000005525   ⟹   ENSCSAP00000003745
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1295,479,447 - 95,620,364 (+)Ensembl
RefSeq Acc Id: XM_007969623   ⟹   XP_007967814
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11295,479,775 - 95,836,734 (+)NCBI
Vero_WHO_p1.0NW_02366603883,832,328 - 84,200,895 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969624   ⟹   XP_007967815
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11295,477,612 - 95,836,733 (+)NCBI
Vero_WHO_p1.0NW_02366603883,830,767 - 84,200,895 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969625   ⟹   XP_007967816
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11295,477,835 - 95,690,007 (+)NCBI
Vero_WHO_p1.0NW_02366603883,830,767 - 84,047,979 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969627   ⟹   XP_007967818
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11295,477,835 - 95,690,007 (+)NCBI
Vero_WHO_p1.0NW_02366603883,830,767 - 84,047,979 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969628   ⟹   XP_007967819
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11295,477,835 - 95,625,448 (+)NCBI
Vero_WHO_p1.0NW_02366603883,830,767 - 83,979,135 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037998573   ⟹   XP_037854501
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,767 - 84,200,895 (+)NCBI
RefSeq Acc Id: XM_037998574   ⟹   XP_037854502
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,856 - 84,200,895 (+)NCBI
RefSeq Acc Id: XM_037998575   ⟹   XP_037854503
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,767 - 84,200,895 (+)NCBI
RefSeq Acc Id: XM_037998576   ⟹   XP_037854504
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,856 - 84,200,895 (+)NCBI
RefSeq Acc Id: XM_037998577   ⟹   XP_037854505
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,767 - 84,200,895 (+)NCBI
RefSeq Acc Id: XM_037998578   ⟹   XP_037854506
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,856 - 84,200,895 (+)NCBI
RefSeq Acc Id: XM_037998579   ⟹   XP_037854507
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,869 - 84,047,978 (+)NCBI
RefSeq Acc Id: XM_037998580   ⟹   XP_037854508
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,879 - 83,979,135 (+)NCBI
RefSeq Acc Id: XM_037998581   ⟹   XP_037854509
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,879 - 83,979,135 (+)NCBI
RefSeq Acc Id: XM_037998583   ⟹   XP_037854511
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,767 - 83,979,135 (+)NCBI
RefSeq Acc Id: XM_037998584   ⟹   XP_037854512
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,830,879 - 83,979,135 (+)NCBI
RefSeq Acc Id: XM_037998585   ⟹   XP_037854513
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603883,832,344 - 83,979,135 (+)NCBI
1 to 5 of 18 rows
1 to 5 of 18 rows
RefSeq Acc Id: XP_007967815   ⟸   XM_007969624
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007967816   ⟸   XM_007969625
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R556 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967818   ⟸   XM_007969627
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R556 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967819   ⟸   XM_007969628
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R556 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967814   ⟸   XM_007969623
- Peptide Label: isoform X1



1 to 35 of 35 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000007484 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005525.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRFN UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  NTRK_C2 UniProtKB/TrEMBL
  Tyr_kin_neurotrophic_rcpt_2 UniProtKB/TrEMBL
  Tyr_kinase_NGF_rcpt UniProtKB/TrEMBL
NCBI Gene NTRK2 ENTREZGENE
PANTHER KEKKON 5, ISOFORM A UniProtKB/TrEMBL
  SYNAPTIC ADHESION-LIKE MOLECULE SALM UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  TPKR_C2 UniProtKB/TrEMBL
PRINTS NTKRECEPTOR UniProtKB/TrEMBL
  NTKRECEPTOR2 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A0D9R556 ENTREZGENE, UniProtKB/TrEMBL
1 to 35 of 35 rows