Ndufa5 (NADH:ubiquinone oxidoreductase subunit A5) - Rat Genome Database

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Gene: Ndufa5 (NADH:ubiquinone oxidoreductase subunit A5) Rattus norvegicus
Analyze
Symbol: Ndufa5
Name: NADH:ubiquinone oxidoreductase subunit A5
RGD ID: 3155
Description: Predicted to be involved in respiratory electron transport chain. Part of protein-containing complex. Orthologous to human NDUFA5 (NADH:ubiquinone oxidoreductase subunit A5); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5-triiodo-L-thyronine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CI-13kD-B; complex I subunit B13; complex I-13kD-B; MGC72911; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5; NADH ubiquinone oxidoreductase subunit B13; NADH-ubiquinone oxidoreductase 13 kDa-B subunit; NADHUO
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8453,962,877 - 53,971,235 (-)NCBIGRCr8
mRatBN7.2452,997,327 - 53,005,685 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,659,223 - 73,659,585 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl452,995,546 - 53,005,598 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx457,984,164 - 57,992,522 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,890,983 - 53,899,344 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,325,552 - 52,333,908 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0451,590,413 - 51,598,771 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl451,590,413 - 51,598,771 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0451,368,669 - 51,377,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4450,649,500 - 50,657,858 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1450,880,073 - 50,888,427 (-)NCBI
Celera448,163,115 - 48,171,473 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufa5RatAlzheimer's disease  ISONdufa5 (Mus musculus) and NDUFA5 (Homo sapiens)13801191 RGD 
Ndufa5RatFacial Nerve Injuries  IEP 2302319mRNA:increased expression:skeletal muscleRGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufa5Ratpleomorphic xanthoastrocytoma  ISONDUFA5 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358

1 to 20 of 110 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufa5Rat(+)-dexrazoxane increases expressionISONdufa5 (Mus musculus)6480464Dexrazoxane results in increased expression of NDUFA5 mRNACTDPMID:26873546
Ndufa5Rat(S)-nicotine increases expressionISONDUFA5 (Homo sapiens)6480464Nicotine results in increased expression of NDUFA5 mRNACTDPMID:16949557
Ndufa5Rat1,2-dichloroethane decreases expressionISONdufa5 (Mus musculus)6480464ethylene dichloride results in decreased expression of NDUFA5 mRNACTDPMID:28960355
Ndufa5Rat1,2-dimethylhydrazine multiple interactionsISONdufa5 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of NDUFA5 mRNACTDPMID:22206623
Ndufa5Rat1,2-dimethylhydrazine decreases expressionISONdufa5 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of NDUFA5 mRNACTDPMID:22206623
Ndufa5Rat17alpha-ethynylestradiol affects expressionISONdufa5 (Mus musculus)6480464Ethinyl Estradiol affects the expression of NDUFA5 mRNACTDPMID:17555576
Ndufa5Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of NDUFA5 mRNACTDPMID:15212814
Ndufa5Rat17alpha-ethynylestradiol multiple interactionsISONdufa5 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NDUFA5 mRNACTDPMID:17942748
Ndufa5Rat17beta-estradiol decreases expressionISONdufa5 (Mus musculus)6480464Estradiol results in decreased expression of NDUFA5 mRNACTDPMID:39298647
Ndufa5Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONdufa5 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NDUFA5 mRNACTDPMID:17942748
Ndufa5Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NDUFA5 mRNACTDPMID:32109520 and PMID:34747641
Ndufa5Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONdufa5 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NDUFA5 mRNACTDPMID:21570461
Ndufa5Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONdufa5 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of NDUFA5 mRNACTDPMID:20399798
Ndufa5Rat3,3',5-triiodo-L-thyronine increases expressionEXP 6480464Triiodothyronine results in increased expression of NDUFA5 mRNACTDPMID:15953391
Ndufa5Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISONdufa5 (Mus musculus)6480464[1-Methyl-3-isobutylxanthine co-treated with Dexamethasone co-treated with INS protein] results in increased expression of NDUFA5 mRNACTDPMID:24848799
Ndufa5Rat4,4'-diaminodiphenylmethane decreases expressionISONdufa5 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of NDUFA5 mRNACTDPMID:18648102
Ndufa5Rat4,4'-sulfonyldiphenol increases expressionISONdufa5 (Mus musculus)6480464bisphenol S results in increased expression of NDUFA5 mRNACTDPMID:39298647
Ndufa5Rat4-hydroxyphenyl retinamide affects expressionISONDUFA5 (Homo sapiens)6480464Fenretinide affects the expression of NDUFA5 mRNACTDPMID:16570282
Ndufa5Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of NDUFA5 mRNACTDPMID:18077114 and PMID:30047161
Ndufa5Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of NDUFA5 mRNACTDPMID:31881176

1 to 20 of 110 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufa5Ratbiological_process  ND 159840711/2018: no relevant rat dataRGD 
Ndufa5Ratrespiratory electron transport chain involved_inIEAInterPro:IPR0068061600115GO_REF:0000002InterProGO_REF:0000002
Ndufa5Ratrespiratory electron transport chain acts_upstream_of_or_withinIEAUniProtKB:Q9CPP6 and ensembl:ENSMUSP000000238511600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufa5Ratrespiratory electron transport chain acts_upstream_of_or_withinISONdufa5 (Mus musculus)1624291MGI:4130259 PMID:24154540RGDPMID:24154540
Ndufa5Ratrespiratory electron transport chain involved_inIBAMGI:1915452 and PANTHER:PTN0002916821600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component
1 to 15 of 15 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufa5Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Ndufa5Ratmitochondrial inner membrane located_inIEAUniProtKB-SubCell:SL-01681600115GO_REF:0000044UniProtGO_REF:0000044
Ndufa5Ratmitochondrial inner membrane is_active_inIEAUniProtKB:Q9CPP6 and ensembl:ENSMUSP000000238511600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufa5Ratmitochondrial inner membrane located_inISONDUFA5 (Homo sapiens)1624291 PMID:28844695RGDPMID:28844695
Ndufa5Ratmitochondrial inner membrane located_inIEAUniProtKB-KW:KW-09991600115GO_REF:0000043UniProtGO_REF:0000043
Ndufa5Ratmitochondrial inner membrane located_inIEAUniProtKB:Q16718 and ensembl:ENSP000003479881600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufa5Ratmitochondrial inner membrane is_active_inISONdufa5 (Mus musculus)1624291 PMID:38575788RGDPMID:38575788
Ndufa5Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Ndufa5Ratprotein-containing complex  IDA 13801192 RGD 
Ndufa5Ratrespiratory chain complex I part_ofISSUniProtKB:Q167181600115GO_REF:0000024UniProtGO_REF:0000024
Ndufa5Ratrespiratory chain complex I part_ofIEAUniProtKB:Q16718 and ensembl:ENSP000003479881600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufa5Ratrespiratory chain complex I part_ofIEAUniProtKB:Q9CPP6 and ensembl:ENSMUSP000000238511600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufa5Ratrespiratory chain complex I part_ofIBAFB:FBgn0047038 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ndufa5Ratrespiratory chain complex I part_ofISONdufa5 (Mus musculus)1624291MGI:4130259 PMID:24154540 and PMID:38575788RGDPMID:24154540 and PMID:38575788
Ndufa5Ratrespiratory chain complex I part_ofISONDUFA5 (Homo sapiens)1624291 PMID:12611891 and PMID:27626371RGDPMID:12611891 and PMID:27626371
1 to 15 of 15 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufa5Ratprotein binding enablesISONDUFA5 (Homo sapiens)1624291UniProtKB:O75489 more ...RGDPMID:24344204 more ...

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufa5RatAlzheimer's disease pathway   IEA 6907045 KEGGrno:05010
Ndufa5RatHuntington's disease pathway   IEA 6907045 KEGGrno:05016
Ndufa5Ratoxidative phosphorylation pathway  IEA 6907045 KEGGrno:00190
Ndufa5RatParkinson's disease pathway   IEA 6907045 KEGGrno:05012

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#
Reference Title
Reference Citation
1. The polypeptide composition of the mitochondrial NADH: ubiquinone reductase complex from several mammalian species. Cleeter MW and Ragan CI, Biochem J. 1985 Sep 15;230(3):739-46.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. A serial analysis of gene expression profile of the Alzheimer's disease Tg2576 mouse model. George AJ, etal., Neurotox Res. 2010 May;17(4):360-79. doi: 10.1007/s12640-009-9112-3. Epub 2009 Sep 16.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
6. Molecular cloning of the rat NADH:ubiquinone oxidoreductase subunit and its up-regulation in the facial muscle after denervation: detected by means of differential display. Kitahara T, etal., Neurol Res. 1996 Aug;18(4):329-36.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
1 to 14 of 14 rows
PMID:12477932   PMID:12611891   PMID:14651853   PMID:15047621   PMID:15489334   PMID:18614015   PMID:21700703   PMID:24154540   PMID:27626371   PMID:34800366  



Ndufa5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8453,962,877 - 53,971,235 (-)NCBIGRCr8
mRatBN7.2452,997,327 - 53,005,685 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,659,223 - 73,659,585 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl452,995,546 - 53,005,598 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx457,984,164 - 57,992,522 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,890,983 - 53,899,344 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,325,552 - 52,333,908 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0451,590,413 - 51,598,771 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl451,590,413 - 51,598,771 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0451,368,669 - 51,377,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4450,649,500 - 50,657,858 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1450,880,073 - 50,888,427 (-)NCBI
Celera448,163,115 - 48,171,473 (-)NCBICelera
Cytogenetic Map4q22NCBI
NDUFA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387123,536,997 - 123,601,651 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7123,536,997 - 123,557,904 (-)EnsemblGRCh38hg38GRCh38
GRCh377123,177,051 - 123,241,705 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367122,968,319 - 122,985,194 (-)NCBINCBI36Build 36hg18NCBI36
Build 347122,775,033 - 122,791,909NCBI
Celera7117,984,821 - 118,001,712 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7117,543,876 - 117,560,767 (-)NCBIHuRef
CHM1_17123,114,373 - 123,131,247 (-)NCBICHM1_1
T2T-CHM13v2.07124,853,763 - 124,918,422 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27122,569,696 - 122,586,588 (-)NCBI
Ndufa5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39624,518,661 - 24,527,689 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl624,518,665 - 24,528,012 (-)EnsemblGRCm39 Ensembl
GRCm38624,518,662 - 24,527,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl624,518,666 - 24,528,013 (-)EnsemblGRCm38mm10GRCm38
MGSCv37624,468,666 - 24,477,687 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36624,468,676 - 24,477,697 (-)NCBIMGSCv36mm8
Celera624,530,384 - 24,539,405 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.28NCBI
Ndufa5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554795,064,652 - 5,080,215 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554795,065,948 - 5,080,215 (-)NCBIChiLan1.0ChiLan1.0
NDUFA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26160,409,229 - 160,426,155 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1712,419,478 - 12,436,355 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07115,547,062 - 115,563,948 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17128,230,035 - 128,246,800 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7128,230,035 - 128,246,800 (-)Ensemblpanpan1.1panPan2
NDUFA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11411,995,862 - 12,008,257 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1411,680,175 - 11,692,562 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01411,773,697 - 11,786,109 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1411,773,694 - 11,787,826 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11411,963,395 - 11,975,792 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01411,701,242 - 11,713,645 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01411,941,763 - 11,954,191 (+)NCBIUU_Cfam_GSD_1.0
Ndufa5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511850,275,192 - 50,288,699 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366051,915,031 - 1,928,732 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366051,915,246 - 1,928,853 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1823,881,966 - 23,900,855 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11823,881,872 - 23,896,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21825,478,874 - 25,492,248 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12192,330,693 - 92,348,567 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2192,327,822 - 92,348,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604211,117,409 - 11,135,413 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufa5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478312,418,963 - 12,439,440 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478312,418,825 - 12,435,868 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ndufa5
13 total Variants

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:47
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000008325
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat

1 to 10 of 41 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000008325   ⟹   ENSRNOP00000008325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl451,590,413 - 51,598,771 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000020076   ⟹   ENSRNOP00000092529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl573,659,223 - 73,659,585 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096026   ⟹   ENSRNOP00000078262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl452,995,546 - 53,005,598 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100355   ⟹   ENSRNOP00000089514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl452,995,546 - 53,005,598 (-)Ensembl
RefSeq Acc Id: NM_012985   ⟹   NP_037117
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8453,962,877 - 53,971,235 (-)NCBI
mRatBN7.2452,997,327 - 53,005,685 (-)NCBI
Rnor_6.0451,590,413 - 51,598,771 (-)NCBI
Rnor_5.0451,368,669 - 51,377,027 (-)NCBI
RGSC_v3.4450,649,500 - 50,657,858 (-)RGD
Celera448,163,115 - 48,171,473 (-)RGD
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_037117 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH59148 (Get FASTA)   NCBI Sequence Viewer  
  BAA13045 (Get FASTA)   NCBI Sequence Viewer  
  EDM15169 (Get FASTA)   NCBI Sequence Viewer  
  EDM15170 (Get FASTA)   NCBI Sequence Viewer  
  EDM15171 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000078262.1
  ENSRNOP00000109596
GenBank Protein Q63362 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_037117   ⟸   NM_012985
- UniProtKB: Q63362 (UniProtKB/Swiss-Prot),   A6IE84 (UniProtKB/TrEMBL),   A0A8I6AIC3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008325   ⟸   ENSRNOT00000008325
Ensembl Acc Id: ENSRNOP00000089514   ⟸   ENSRNOT00000100355
Ensembl Acc Id: ENSRNOP00000078262   ⟸   ENSRNOT00000096026
Ensembl Acc Id: ENSRNOP00000092529   ⟸   ENSRNOT00000020076

Name Modeler Protein Id AA Range Protein Structure
AF-Q63362-F1-model_v2 AlphaFold Q63362 1-116 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692904
Promoter ID:EPDNEW_R3429
Type:initiation region
Name:Ndufa5_1
Description:NADH:ubiquinone oxidoreductase subunit A5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0451,598,638 - 51,598,698EPDNEW


1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-45485 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
BioCyc Pathway Image PWY-3781 BioCyc
Ensembl Genes ENSRNOG00000005698 Ensembl
  ENSRNOG00000014899 Ensembl
  ENSRNOG00000071062 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000090026 ENTREZGENE
Ensembl Transcript ENSRNOT00000096026.1 UniProtKB/Swiss-Prot
  ENSRNOT00000150412 ENTREZGENE
IMAGE_CLONE IMAGE:6919202 IMAGE-MGC_LOAD
InterPro NDUFA5 UniProtKB/Swiss-Prot
KEGG Report rno:25488 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72911 IMAGE-MGC_LOAD
NCBI Gene 25488 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 5 UniProtKB/Swiss-Prot
  PTHR12653 UniProtKB/Swiss-Prot
Pfam ETC_C1_NDUFA5 UniProtKB/Swiss-Prot
PhenoGen Ndufa5 PhenoGen
RatGTEx ENSRNOG00000005698 RatGTEx
  ENSRNOG00000014899 RatGTEx
  ENSRNOG00000071062 RatGTEx
  ENSRNOG00000090026 RatGTEx
TIGR TC216646
UniProt A0A8I6A8X4_RAT UniProtKB/TrEMBL
  A0A8I6AIC3 ENTREZGENE, UniProtKB/TrEMBL
  A6IE83_RAT UniProtKB/TrEMBL
  A6IE84 ENTREZGENE, UniProtKB/TrEMBL
  NDUA5_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Ndufa5  NADH:ubiquinone oxidoreductase subunit A5  Ndufa5  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Ndufa5  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5    NADH ubiquinone oxidoreductase subunit B13  Name updated 625702 APPROVED
2002-06-10 Ndufa5  NADH ubiquinone oxidoreductase subunit B13      Symbol and Name status set to approved 70586 APPROVED