Acadm (acyl-CoA dehydrogenase medium chain) - Rat Genome Database

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Gene: Acadm (acyl-CoA dehydrogenase medium chain) Rattus norvegicus
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Symbol: Acadm
Name: acyl-CoA dehydrogenase medium chain
RGD ID: 2012
Description: Enables several functions, including acyl-CoA dehydrogenase activity; flavin adenine dinucleotide binding activity; and protein homodimerization activity. Involved in several processes, including fatty acid catabolic process; response to copper ion; and response to glucocorticoid. Located in mitochondrial matrix and mitochondrial membrane. Biomarker of metabolic dysfunction-associated steatotic liver disease. Human ortholog(s) of this gene implicated in medium chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADM (acyl-CoA dehydrogenase medium chain); PARTICIPATES IN fatty acid beta degradation pathway; 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; INTERACTS WITH (+)-schisandrin B; 1-[(2,3,4-trimethoxyphenyl)methyl]piperazine; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: acetyl-Coenzyme A dehydrogenase, medium chain; acyl-CoA dehydrogenase, C-4 to C-12 straight chain; Acyl-Coenzyme A dehydrogenase C-4 to C-12 straight-chain; acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain; Acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight-chain; acyl-Coenzyme A dehydrogenase, medium chain; MCAD; MCAD, medium chain acyl-CoA dehydrogenase; medium-chain acyl-CoA dehydrogenase; medium-chain specific acyl-CoA dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82245,518,693 - 245,542,864 (-)NCBIGRCr8
mRatBN7.22242,858,865 - 242,883,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,858,865 - 242,883,147 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2250,681,651 - 250,705,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02248,575,474 - 248,599,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02243,474,041 - 243,498,277 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02260,124,418 - 260,148,589 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,124,418 - 260,148,589 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02278,788,485 - 278,812,656 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42251,866,645 - 251,890,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12251,881,251 - 251,905,336 (-)NCBI
Celera2234,791,302 - 234,815,446 (-)NCBICelera
RH 3.4 Map21631.1RGD
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Term
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Original Reference(s)
AcadmRatmetabolic dysfunction-associated steatotic liver disease treatmentIEP 10047124 RGD 
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Original Reference(s)
AcadmRatCongenital Hydrocephalus 2, with or without Brain or Eye Anomalies  ISOACADM (Homo sapiens)8554872ClinVar Annotator: match by term: Hydrocephalus more ...ClinVarPMID:11673361 more ...
AcadmRatgenetic disease  ISOACADM (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:11263545 more ...
AcadmRatmedium chain acyl-CoA dehydrogenase deficiency  ISOACADM (Homo sapiens)8554872ClinVar Annotator: match by term: Medium-chain acyl-coenzyme A dehydrogenase deficiencyClinVarPMID:10767181 more ...
AcadmRatmedium chain acyl-CoA dehydrogenase deficiency  ISOACADM (Homo sapiens)8554872ClinVar Annotator: match by term: Medium-chain acyl-coenzyme A dehydrogenase deficiencyClinVarPMID:10767181 more ...
Object Symbol
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Original Reference(s)
AcadmRatLiver Failure  ISOACADM (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:9090694
AcadmRatmedium chain acyl-CoA dehydrogenase deficiency  ISOACADM (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
AcadmRatobesity  ISOACADM (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20882379
AcadmRatperinatal necrotizing enterocolitis  ISOACADM (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18806098
AcadmRatWeight Gain  ISOACADM (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19030233
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Original Reference(s)
AcadmRatmedium chain acyl-CoA dehydrogenase deficiency  ISSAcadm (Mus musculus)13592920OMIM:201450MouseDO 
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Original Reference(s)
AcadmRatmedium chain acyl-CoA dehydrogenase deficiency  ISOACADM (Homo sapiens)7240710 OMIM 

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Original Reference(s)
AcadmRat(+)-dexrazoxane multiple interactionsISOAcadm (Mus musculus)6480464[Doxorubicin co-treated with Dexrazoxane] results in increased expression of ACADM mRNACTDPMID:26873546
AcadmRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ACADM mRNA]CTDPMID:31150632
AcadmRat(-)-epigallocatechin 3-gallate multiple interactionsISOACADM (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of ACADM mRNACTDPMID:22079256
AcadmRat(1->4)-beta-D-glucan multiple interactionsISOAcadm (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ACADM mRNACTDPMID:36331819
AcadmRat1,2-dichloroethane increases expressionISOAcadm (Mus musculus)6480464ethylene dichloride results in increased expression of ACADM mRNACTDPMID:28960355
AcadmRat1,2-dimethylhydrazine multiple interactionsISOAcadm (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ACADM mRNACTDPMID:22206623
AcadmRat1,2-dimethylhydrazine decreases expressionISOAcadm (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of ACADM mRNACTDPMID:22206623
AcadmRat1-[(2,3,4-trimethoxyphenyl)methyl]piperazine multiple interactionsEXP 6480464Trimetazidine promotes the reaction [Oxygen deficiency results in decreased expression of ACADM mRNA]CTDPMID:25937560
AcadmRat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of ACADM mRNACTDPMID:17522070
AcadmRat1-naphthyl isothiocyanate multiple interactionsISOAcadm (Mus musculus)6480464Allopurinol inhibits the reaction [1-Naphthylisothiocyanate results in decreased expression of ACADM mRNA]CTDPMID:33749747
AcadmRat1-naphthyl isothiocyanate decreases expressionISOAcadm (Mus musculus)64804641-Naphthylisothiocyanate results in decreased expression of ACADM mRNACTDPMID:33749747
AcadmRat17alpha-ethynylestradiol affects expressionISOAcadm (Mus musculus)6480464Ethinyl Estradiol affects the expression of ACADM mRNACTDPMID:17555576
AcadmRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of ACADM mRNACTDPMID:12075121
AcadmRat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of ACADM mRNACTDPMID:16174780
AcadmRat17alpha-ethynylestradiol multiple interactionsISOAcadm (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ACADM mRNACTDPMID:17942748
AcadmRat17alpha-ethynylestradiol increases expressionISOAcadm (Mus musculus)6480464Ethinyl Estradiol results in increased expression of ACADM mRNACTDPMID:17942748
AcadmRat17alpha-ethynylestradiol decreases expressionISOAcadm (Mus musculus)6480464Ethinyl Estradiol results in decreased expression of ACADM mRNACTDPMID:16174780
AcadmRat17beta-estradiol decreases expressionISOAcadm (Mus musculus)6480464Estradiol results in decreased expression of ACADM mRNACTDPMID:14664709 and PMID:19484750
AcadmRat17beta-estradiol increases expressionISOAcadm (Mus musculus)6480464Estradiol results in increased expression of ACADM mRNACTDPMID:39298647
AcadmRat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of ACADM mRNACTDPMID:26496021

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Biological Process
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Original Reference(s)
AcadmRatcarboxylic acid catabolic process involved_inIEAARBA:ARBA000278821600115GO_REF:0000117UniProtGO_REF:0000117
AcadmRatcardiac muscle cell differentiation acts_upstream_of_or_withinISOAcadm (Mus musculus)1624291MGI:3692446 PMID:16121256RGDPMID:16121256
AcadmRatcardiac muscle cell differentiation acts_upstream_of_or_withinIEAUniProtKB:P45952 and ensembl:ENSMUSP000000724831600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatcarnitine biosynthetic process involved_inIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatcarnitine biosynthetic process involved_inISOACADM (Homo sapiens)1624291 PMID:16972171RGDPMID:16972171
AcadmRatcarnitine metabolic process acts_upstream_of_or_withinISOAcadm (Mus musculus)1624291MGI:3692446 PMID:16121256RGDPMID:16121256
AcadmRatcarnitine metabolic process acts_upstream_of_or_withinIEAUniProtKB:P45952 and ensembl:ENSMUSP000000724831600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatcarnitine metabolic process, CoA-linked involved_inISOAcadm (Mus musculus)1624291 PMID:18459129RGDPMID:18459129
AcadmRatcarnitine metabolic process, CoA-linked involved_inISOACADM (Homo sapiens)1624291 PMID:16972171RGDPMID:16972171
AcadmRatcarnitine metabolic process, CoA-linked involved_inIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatcarnitine metabolic process, CoA-linked involved_inIEAUniProtKB:P45952 and ensembl:ENSMUSP000000724831600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatfatty acid beta-oxidation involved_inIEAInterPro:IPR0341801600115GO_REF:0000002InterProGO_REF:0000002
AcadmRatfatty acid beta-oxidation  TAS 1358266 RGD 
AcadmRatfatty acid beta-oxidation involved_inIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatfatty acid beta-oxidation involved_inISOACADM (Homo sapiens)1624291 PMID:2393404RGDPMID:2393404
AcadmRatfatty acid beta-oxidation involved_inISSUniProtKB:P113101600115GO_REF:0000024UniProtGO_REF:0000024
AcadmRatfatty acid beta-oxidation using acyl-CoA dehydrogenase  IDA 2317678 RGD 
AcadmRatfatty acid beta-oxidation using acyl-CoA dehydrogenase involved_inISOACADM (Homo sapiens)1624291 PMID:16972171 more ...RGDPMID:16972171 more ...
AcadmRatfatty acid beta-oxidation using acyl-CoA dehydrogenase involved_inIEAUniProtKB:P45952 and ensembl:ENSMUSP000000724831600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatfatty acid beta-oxidation using acyl-CoA dehydrogenase involved_inIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
AcadmRataxon located_inIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRataxon located_inISOACADM (Homo sapiens)1624291 PMID:21237683RGDPMID:21237683
AcadmRatcytoplasm located_inIEAARBA:ARBA000269711600115GO_REF:0000117UniProtGO_REF:0000117
AcadmRatcytoplasm is_active_inIBAFB:FBgn0035811 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadmRatintracellular membrane-bounded organelle located_inIEAARBA:ARBA000290851600115GO_REF:0000117UniProtGO_REF:0000117
AcadmRatmitochondrial matrix located_inISOACADM (Homo sapiens)1624291 PMID:16020546RGDPMID:16020546
AcadmRatmitochondrial matrix located_inIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatmitochondrial matrix located_inIEAUniProtKB-SubCell:SL-01701600115GO_REF:0000044UniProtGO_REF:0000044
AcadmRatmitochondrial matrix located_inIDA 8553446PMID:3813556BHF-UCL 
AcadmRatmitochondrial membrane located_inISOACADM (Homo sapiens)1624291 PMID:16020546RGDPMID:16020546
AcadmRatmitochondrial membrane located_inIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatmitochondrial membrane located_inIDA 8553446PMID:3813556BHF-UCL 
AcadmRatmitochondrion located_inIEAInterPro:IPR0341801600115GO_REF:0000002InterProGO_REF:0000002
AcadmRatmitochondrion located_inIEAUniProtKB:A0A0S2Z366 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatmitochondrion located_inIEAUniProtKB:P45952 and ensembl:ENSMUSP000000724831600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatmitochondrion located_inIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatmitochondrion located_inISOAcadm (Mus musculus)1624291 PMID:26767982RGDPMID:26767982
AcadmRatmitochondrion is_active_inIBAFB:FBgn0035811 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadmRatmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
AcadmRatmitochondrion located_inISOACADM (Homo sapiens)1624291 RGDGO_REF:0000054
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Molecular Function
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Original Reference(s)
AcadmRatacyl-CoA dehydrogenase activity  IDA 2317678 RGD 
AcadmRatacyl-CoA dehydrogenase activity  IDA 1358266 RGD 
AcadmRatacyl-CoA dehydrogenase activity enablesIEAInterPro:IPR0060891600115GO_REF:0000002InterProGO_REF:0000002
AcadmRatacyl-CoA dehydrogenase activity enablesIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatacyl-CoA dehydrogenase activity enablesISOACADM (Homo sapiens)1624291 PMID:19224950 and PMID:2393404RGDPMID:19224950 and PMID:2393404
AcadmRatacyl-CoA dehydrogenase activity enablesISSUniProtKB:P113101600115GO_REF:0000024UniProtGO_REF:0000024
AcadmRatflavin adenine dinucleotide binding  IDA 2317678 RGD 
AcadmRatflavin adenine dinucleotide binding enablesIEAInterPro:IPR013786 and InterPro:IPR0370691600115GO_REF:0000002InterProGO_REF:0000002
AcadmRatidentical protein binding enablesIDA 8553446PMID:3813556BHF-UCL 
AcadmRatidentical protein binding enablesISOACADM (Homo sapiens) and UniProtKB:P11310-PRO_00000005021624291UniProtKB:P11310-PRO_0000000502 and PMID:37257730RGDPMID:37257730
AcadmRatidentical protein binding enablesISOACADM (Homo sapiens)1624291 PMID:19224950RGDPMID:19224950
AcadmRatidentical protein binding enablesIEAUniProtKB:P11310 and ensembl:ENSP000003598781600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatisomerase activity  IDA 1598685 RGD 
AcadmRatmedium-chain fatty acyl-CoA dehydrogenase activity enablesIEAUniProtKB:P45952 and ensembl:ENSMUSP000000724831600115GO_REF:0000107EnsemblGO_REF:0000107
AcadmRatmedium-chain fatty acyl-CoA dehydrogenase activity enablesIEARHEA:144771600115GO_REF:0000116RHEAGO_REF:0000116
AcadmRatmedium-chain fatty acyl-CoA dehydrogenase activity enablesISOAcadm (Mus musculus)1624291 PMID:18459129RGDPMID:18459129
AcadmRatmedium-chain fatty acyl-CoA dehydrogenase activity enablesIBAFB:FBgn0035811 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadmRatmedium-chain fatty acyl-CoA dehydrogenase activity enablesIEAInterPro:IPR0341801600115GO_REF:0000002InterProGO_REF:0000002
AcadmRatmedium-chain fatty acyl-CoA dehydrogenase activity enablesISOACADM (Homo sapiens)1624291 PMID:1902818 more ...RGDPMID:1902818 more ...
AcadmRatmedium-chain fatty acyl-CoA dehydrogenase activity enablesIEAEC:1.3.8.71600115GO_REF:0000003UniProtGO_REF:0000003
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RGD Manual Annotations


  
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Original Reference(s)
AcadmRatfatty acid beta degradation pathway   ISOACADM (Homo sapiens)2317589 RGD 
AcadmRatfatty acid beta degradation pathway   IDA 2317678 RGD 

Imported Annotations - SMPDB

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Original Reference(s)
AcadmRat3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00138
AcadmRat3-hydroxyisobutyric aciduria pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00522
AcadmRat3-hydroxyisobutyric aciduria pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00521
AcadmRat3-methylcrotonyl CoA carboxylase 1 deficiency pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00237
AcadmRat3-methylglutaconic aciduria type 1 pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00139
AcadmRat3-methylglutaconic aciduria type 3 pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00140
AcadmRatcarnitine palmitoyltransferase I deficiency pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00538
AcadmRatethylmalonic encephalopathy pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00181
AcadmRatfatty acid beta degradation pathway   ISOACADM (Homo sapiens)10402751 SMPDBSMP:00481
AcadmRatfatty acid metabolic pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00051
AcadmRatglutaric aciduria type I pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00185
AcadmRatisobutyryl-CoA dehydrogenase deficiency pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00523
AcadmRatisovaleric acidemia pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00238
AcadmRatisovaleric acidemia pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00524
AcadmRatmalonic aciduria pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00198
AcadmRatmalonic aciduria pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00502
AcadmRatmaple syrup urine disease pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00199
AcadmRatmedium chain acyl-CoA dehydrogenase deficiency pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00542
AcadmRatmethylmalonate semialdehyde dehydrogenase deficiency pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00384
AcadmRatmethylmalonic acidemia pathway  ISOACADM (Homo sapiens)10402751 SMPDBSMP:00200
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Imported Annotations - KEGG (archival)

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Original Reference(s)
AcadmRatbeta-alanine metabolic pathway  IEA 6907045 KEGGrno:00410
AcadmRateicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma  IEA 6907045 KEGGrno:03320
AcadmRatfatty acid metabolic pathway  IEA 6907045 KEGGrno:00071
AcadmRatpropanoate metabolic pathway  IEA 6907045 KEGGrno:00640
AcadmRatvaline, leucine and isoleucine degradation pathway  IEA 6907045 KEGGrno:00280

Imported Annotations - PID (archival)

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Original Reference(s)
AcadmRatforkhead class A signaling pathway  ISOACADM (Homo sapiens)6484113 PIDPID:200087

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#
Reference Title
Reference Citation
1. Transcriptional regulation by glucocorticoids of mitochondrial oxidative enzyme genes in the developing rat kidney. Djouadi F, etal., Biochem J. 1996 Apr 15;315 ( Pt 2):555-62.
2. Tissue-specific regulation of medium-chain acyl-CoA dehydrogenase gene by thyroid hormones in the developing rat. Djouadi F, etal., Biochem J. 1997 May 15;324 ( Pt 1):289-94.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Acyl-CoA dehydrogenases. A mechanistic overview. Ghisla S and Thorpe C, Eur J Biochem. 2004 Feb;271(3):494-508.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Biosynthesis of four rat liver mitochondrial acyl-CoA dehydrogenases: in vitro synthesis, import into mitochondria, and processing of their precursors in a cell-free system and in cultured cells. Ikeda Y, etal., Arch Biochem Biophys. 1987 Feb 1;252(2):662-74.
7. Purification and characterization of short-chain, medium-chain, and long-chain acyl-CoA dehydrogenases from rat liver mitochondria. Isolation of the holo- and apoenzymes and conversion of the apoenzyme to the holoenzyme. Ikeda Y, etal., J Biol Chem. 1985 Jan 25;260(2):1311-25.
8. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
9. Selenium significantly inhibits adipocyte hypertrophy and abdominal fat accumulation in OLETF rats via induction of fatty acid beta-oxidation. Kim JE, etal., Biol Trace Elem Res. 2012 Dec;150(1-3):360-70. doi: 10.1007/s12011-012-9519-1. Epub 2012 Oct 18.
10. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
11. Improved radiation hybrid map of rat chromosome 2: colocalization of the genes encoding corticotropin-releasing hormone and IL6-receptor with quantitative trait loci regulating the inflammatory response. Laes JF, etal., Cytogenet Cell Genet 2001;92(1-2):130-3.
12. Mitochondrial transcription factor A is increased but expression of ATP synthase beta subunit and medium-chain acyl-CoA dehydrogenase genes are decreased in hearts of copper-deficient rats. Mao S, etal., J Nutr. 2000 Sep;130(9):2143-50.
13. Molecular cloning and nucleotide sequence of cDNA encoding the entire precursor of rat liver medium chain acyl coenzyme A dehydrogenase. Matsubara Y, etal., J Biol Chem 1987 Jul 25;262(21):10104-8.
14. Molecular cloning and nucleotide sequence of cDNAs encoding the precursors of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence homology of four enzymes of the acyl-CoA dehydrogenase family. Matsubara Y, etal., J Biol Chem 1989 Sep 25;264(27):16321-31.
15. A skeletal growth defect in the puma (Felis concolor). McMullin PF Vet Rec 1978 Oct 14;103(16):356-8.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. Supplementation with alpha-linolenic acid-rich diacylglycerol suppresses fatty liver formation accompanied by an up-regulation of beta-oxidation in Zucker fatty rats. Murase T, etal., Biochim Biophys Acta. 2005 Apr 15;1733(2-3):224-31. Epub 2005 Jan 13.
18. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
19. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
20. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
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PMID:1902818   PMID:1970566   PMID:2029527   PMID:2393404   PMID:3597357   PMID:14651853   PMID:16020546   PMID:16121256   PMID:16972171   PMID:18061544   PMID:18459129   PMID:18614015  
PMID:19224950   PMID:19428797   PMID:19703432   PMID:21084676   PMID:21237683   PMID:21630459   PMID:23376485   PMID:25416781   PMID:26316108   PMID:26767982   PMID:32227582  



Acadm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82245,518,693 - 245,542,864 (-)NCBIGRCr8
mRatBN7.22242,858,865 - 242,883,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,858,865 - 242,883,147 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2250,681,651 - 250,705,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02248,575,474 - 248,599,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02243,474,041 - 243,498,277 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02260,124,418 - 260,148,589 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,124,418 - 260,148,589 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02278,788,485 - 278,812,656 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42251,866,645 - 251,890,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12251,881,251 - 251,905,336 (-)NCBI
Celera2234,791,302 - 234,815,446 (-)NCBICelera
RH 3.4 Map21631.1RGD
Cytogenetic Map2q45NCBI
ACADM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,724,709 - 75,763,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,724,431 - 75,787,575 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,190,394 - 76,229,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,962,870 - 76,001,771 (+)NCBINCBI36Build 36hg18NCBI36
Build 34175,902,302 - 75,941,204NCBI
Celera174,429,931 - 74,469,272 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef174,319,974 - 74,359,196 (+)NCBIHuRef
CHM1_1176,305,398 - 76,344,690 (+)NCBICHM1_1
T2T-CHM13v2.0175,561,369 - 75,600,339 (+)NCBIT2T-CHM13v2.0
Acadm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393153,627,990 - 153,650,280 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3153,627,994 - 153,650,269 (-)EnsemblGRCm39 Ensembl
GRCm383153,922,353 - 153,944,643 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3153,922,357 - 153,944,632 (-)EnsemblGRCm38mm10GRCm38
MGSCv373153,585,323 - 153,607,396 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363153,859,745 - 153,881,818 (-)NCBIMGSCv36mm8
Celera3160,386,018 - 160,408,092 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map378.77NCBI
Acadm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542317,172,779 - 17,199,090 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542317,173,648 - 17,199,189 (-)NCBIChiLan1.0ChiLan1.0
ACADM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21151,129,587 - 151,168,926 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,290,108 - 150,329,365 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,939,477 - 74,978,815 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,911,763 - 76,950,840 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,911,763 - 76,950,840 (+)Ensemblpanpan1.1panPan2
ACADM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1670,852,223 - 70,881,979 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl670,853,061 - 70,878,668 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha673,516,991 - 73,547,426 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0671,444,858 - 71,475,297 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl671,444,855 - 71,475,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1670,941,180 - 70,971,613 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0670,886,684 - 70,917,117 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0671,380,006 - 71,410,441 (-)NCBIUU_Cfam_GSD_1.0
Acadm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505887,250,876 - 87,286,693 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365712,761,254 - 2,797,045 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACADM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6137,541,381 - 137,595,108 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16137,541,481 - 137,575,544 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26127,513,877 - 127,547,942 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACADM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12057,428,863 - 57,468,422 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2057,428,472 - 57,468,359 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603360,040,155 - 60,081,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acadm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474221,188,062 - 21,215,436 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Acadm
88 total Variants

Predicted Target Of
Summary Value
Count of predictions:240
Count of miRNA genes:156
Interacting mature miRNAs:178
Transcripts:ENSRNOT00000013238
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat

1 to 10 of 16 rows
RH142291  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,859,103 - 242,859,280 (+)MAPPERmRatBN7.2
Rnor_6.02260,124,657 - 260,124,833NCBIRnor6.0
Rnor_5.02278,788,724 - 278,788,900UniSTSRnor5.0
RGSC_v3.42251,866,882 - 251,867,058UniSTSRGSC3.4
Celera2234,791,541 - 234,791,717UniSTS
RH 3.4 Map21631.1UniSTS
Cytogenetic Map2q45UniSTS
ACADM  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,861,648 - 242,861,836 (+)MAPPERmRatBN7.2
Rnor_6.02260,127,202 - 260,127,389NCBIRnor6.0
Rnor_5.02278,791,269 - 278,791,456UniSTSRnor5.0
RGSC_v3.42251,869,427 - 251,869,614UniSTSRGSC3.4
Celera2234,794,086 - 234,794,273UniSTS
Cytogenetic Map2q45UniSTS
RH133158  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82245,539,690 - 245,539,887 (+)Marker Load Pipeline
mRatBN7.22242,879,862 - 242,880,059 (+)MAPPERmRatBN7.2
Rnor_6.02260,145,416 - 260,145,612NCBIRnor6.0
Rnor_5.02278,809,483 - 278,809,679UniSTSRnor5.0
RGSC_v3.42251,887,641 - 251,887,837UniSTSRGSC3.4
Celera2234,812,273 - 234,812,469UniSTS
RH 3.4 Map21639.8UniSTS
Cytogenetic Map2q45UniSTS
RH138389  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,874,262 - 242,874,390 (+)MAPPERmRatBN7.2
Rnor_6.02260,139,816 - 260,139,943NCBIRnor6.0
Rnor_5.02278,803,883 - 278,804,010UniSTSRnor5.0
RGSC_v3.42251,882,041 - 251,882,168UniSTSRGSC3.4
Celera2234,806,696 - 234,806,823UniSTS
RH 3.4 Map21630.2UniSTS
Cytogenetic Map2q45UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000013238   ⟹   ENSRNOP00000013238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2242,858,869 - 242,883,147 (-)Ensembl
Rnor_6.0 Ensembl2260,124,418 - 260,148,589 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114224   ⟹   ENSRNOP00000079047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2242,858,865 - 242,880,647 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116479   ⟹   ENSRNOP00000078034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2242,858,865 - 242,880,770 (-)Ensembl
RefSeq Acc Id: NM_016986   ⟹   NP_058682
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82245,518,693 - 245,542,864 (-)NCBI
mRatBN7.22242,858,865 - 242,883,036 (-)NCBI
Rnor_6.02260,124,418 - 260,148,589 (-)NCBI
Rnor_5.02278,788,485 - 278,812,656 (-)NCBI
RGSC_v3.42251,866,645 - 251,890,729 (-)RGD
Celera2234,791,302 - 234,815,446 (-)NCBI
Sequence:
Protein RefSeqs NP_058682 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40670 (Get FASTA)   NCBI Sequence Viewer  
  EDL82532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013238
GenBank Protein P08503 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058682   ⟸   NM_016986
- Peptide Label: precursor
- UniProtKB: P08503 (UniProtKB/Swiss-Prot),   G3V796 (UniProtKB/TrEMBL),   A6HWP6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013238   ⟸   ENSRNOT00000013238
Ensembl Acc Id: ENSRNOP00000078034   ⟸   ENSRNOT00000116479
Ensembl Acc Id: ENSRNOP00000079047   ⟸   ENSRNOT00000114224
Name Modeler Protein Id AA Range Protein Structure
AF-P08503-F1-model_v2 AlphaFold P08503 1-421 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13691832
Promoter ID:EPDNEW_R2356
Type:initiation region
Name:Acadm_1
Description:acyl-CoA dehydrogenase medium chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02260,148,504 - 260,148,564EPDNEW


1 to 36 of 36 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-50767 BioCyc
Ensembl Genes ENSRNOG00000009845 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000013238 ENTREZGENE
Gene3D-CATH 1.10.540.10 UniProtKB/Swiss-Prot
  2.40.110.10 UniProtKB/Swiss-Prot
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/Swiss-Prot
InterPro Acyl-CoA_dehydrogenase UniProtKB/Swiss-Prot
  Acyl-CoA_DH_CS UniProtKB/Swiss-Prot
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/Swiss-Prot
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/Swiss-Prot
  AcylCo_DH-like_C UniProtKB/Swiss-Prot
  AcylCo_DH/oxidase_C UniProtKB/Swiss-Prot
  AcylCoA_DH/ox_N UniProtKB/Swiss-Prot
  AcylCoA_DH/ox_N_sf UniProtKB/Swiss-Prot
  AcylCoA_DH/oxidase_NM_dom UniProtKB/Swiss-Prot
  MCAD UniProtKB/Swiss-Prot
KEGG Report rno:24158 UniProtKB/Swiss-Prot
NCBI Gene 24158 ENTREZGENE
PANTHER MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL UniProtKB/Swiss-Prot
  MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED UniProtKB/Swiss-Prot
Pfam Acyl-CoA_dh_1 UniProtKB/Swiss-Prot
  Acyl-CoA_dh_M UniProtKB/Swiss-Prot
  Acyl-CoA_dh_N UniProtKB/Swiss-Prot
PhenoGen Acadm PhenoGen
PROSITE ACYL_COA_DH_1 UniProtKB/Swiss-Prot
  ACYL_COA_DH_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009845 RatGTEx
Superfamily-SCOP SSF47203 UniProtKB/Swiss-Prot
  SSF56645 UniProtKB/Swiss-Prot
TIGR TC216640
UniProt A0A8I5Y8D9_RAT UniProtKB/TrEMBL
  A0A8I5ZQ05_RAT UniProtKB/TrEMBL
  A6HWP6 ENTREZGENE, UniProtKB/TrEMBL
  ACADM_RAT UniProtKB/Swiss-Prot
  G3V796 ENTREZGENE, UniProtKB/TrEMBL
  P08503 ENTREZGENE
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-09 Acadm  acyl-CoA dehydrogenase medium chain  Acadm  acyl-CoA dehydrogenase, C-4 to C-12 straight chain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-28 Acadm  acyl-CoA dehydrogenase, C-4 to C-12 straight chain  Acadm  acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-08-29 Acadm  acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain  Acadm  acyl-Coenzyme A dehydrogenase, medium chain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-14 Acadm  acyl-Coenzyme A dehydrogenase, medium chain  Acadm  acetyl-Coenzyme A dehydrogenase, medium chain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Acadm  acetyl-coenzyme A dehydrogenase, medium chain    Acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight-chain  Name updated 625702 APPROVED
2002-06-10 Acadm  Acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight-chain      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_expression expressed in liver 631724
gene_function catalyzes the alpha,beta-dehydrogenation of acyl-CoA esters 631739
gene_homology has high similarity to acyl-CoA dehydrogenase family members short chain acyl-CoA (SCAD), long chain acyl-CoA dehydrogenase (LCAD), and isovaleryl-CoA dehydrogenase (IVD) 631718
gene_process plays a role in fatty acid metabolism 631739
gene_product member of the acyl-CoA dehydrogenase family 631724