Acadm (acyl-CoA dehydrogenase medium chain) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Acadm (acyl-CoA dehydrogenase medium chain) Heterocephalus glaber
Analyze
Symbol: Acadm
Name: acyl-CoA dehydrogenase medium chain
RGD ID: 18903082
Description: ENCODES a protein that exhibits acyl-CoA dehydrogenase activity (ortholog); fatty-acyl-CoA binding (ortholog); flavin adenine dinucleotide binding (ortholog); INVOLVED IN cardiac muscle cell differentiation (ortholog); carnitine biosynthetic process (ortholog); carnitine metabolic process (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH Congenital Hydrocephalus 2, with or without Brain or Eye Anomalies (ortholog); Dyslipidemias (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); mitochondrial matrix (ortholog); mitochondrial membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-CoA dehydrogenase, C-4 to C-12 straight chain; Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474221,188,062 - 21,215,436 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acadm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474221,188,062 - 21,215,436 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ACADM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,724,709 - 75,763,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,724,431 - 75,787,575 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,190,394 - 76,229,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,962,870 - 76,001,771 (+)NCBINCBI36Build 36hg18NCBI36
Build 34175,902,302 - 75,941,204NCBI
Celera174,429,931 - 74,469,272 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef174,319,974 - 74,359,196 (+)NCBIHuRef
CHM1_1176,305,398 - 76,344,690 (+)NCBICHM1_1
T2T-CHM13v2.0175,561,369 - 75,600,339 (+)NCBIT2T-CHM13v2.0
Acadm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393153,627,990 - 153,650,280 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3153,627,994 - 153,650,269 (-)EnsemblGRCm39 Ensembl
GRCm383153,922,353 - 153,944,643 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3153,922,357 - 153,944,632 (-)EnsemblGRCm38mm10GRCm38
MGSCv373153,585,323 - 153,607,396 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363153,859,745 - 153,881,818 (-)NCBIMGSCv36mm8
Celera3160,386,018 - 160,408,092 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map378.77NCBI
Acadm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82245,518,693 - 245,542,864 (-)NCBIGRCr8
mRatBN7.22242,858,865 - 242,883,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,858,865 - 242,883,147 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2250,681,651 - 250,705,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02248,575,474 - 248,599,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02243,474,041 - 243,498,277 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02260,124,418 - 260,148,589 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,124,418 - 260,148,589 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02278,788,485 - 278,812,656 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42251,866,645 - 251,890,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12251,881,251 - 251,905,336 (-)NCBI
Celera2234,791,302 - 234,815,446 (-)NCBICelera
RH 3.4 Map21631.1RGD
Cytogenetic Map2q45NCBI
Acadm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542317,172,779 - 17,199,090 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542317,173,648 - 17,199,189 (-)NCBIChiLan1.0ChiLan1.0
ACADM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21151,129,587 - 151,168,926 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,290,108 - 150,329,365 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,939,477 - 74,978,815 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,911,763 - 76,950,840 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,911,763 - 76,950,840 (+)Ensemblpanpan1.1panPan2
ACADM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1670,852,223 - 70,881,979 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl670,853,061 - 70,878,668 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha673,516,991 - 73,547,426 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0671,444,858 - 71,475,297 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl671,444,855 - 71,475,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1670,941,180 - 70,971,613 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0670,886,684 - 70,917,117 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0671,380,006 - 71,410,441 (-)NCBIUU_Cfam_GSD_1.0
Acadm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505887,250,876 - 87,286,693 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365712,761,254 - 2,797,045 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACADM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6137,541,381 - 137,595,108 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16137,541,481 - 137,575,544 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26127,513,877 - 127,547,942 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACADM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12057,428,863 - 57,468,422 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2057,428,472 - 57,468,359 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603360,040,155 - 60,081,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004841430   ⟹   XP_004841487
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,188,062 - 21,215,436 (-)NCBI
RefSeq Acc Id: XM_004841431   ⟹   XP_004841488
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,188,062 - 21,215,436 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004841487 (Get FASTA)   NCBI Sequence Viewer  
  XP_004841488 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA99195 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010805
Reference Protein Sequences
RefSeq Acc Id: XP_004841488   ⟸   XM_004841431
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004841487   ⟸   XM_004841430
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007755 ENTREZGENE
Ensembl Transcript ENSHGLT00000010927 ENTREZGENE
NCBI Gene Acadm ENTREZGENE