Ctnnbip1 (catenin, beta-interacting protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ctnnbip1 (catenin, beta-interacting protein 1) Rattus norvegicus
Analyze
Symbol: Ctnnbip1
Name: catenin, beta-interacting protein 1
RGD ID: 1562749
Description: Predicted to enable armadillo repeat domain binding activity and beta-catenin binding activity. Predicted to be involved in several processes, including negative regulation of cell population proliferation; positive regulation of cell differentiation; and regulation of DNA-templated transcription. Predicted to act upstream of or within anterior/posterior pattern specification; branching involved in ureteric bud morphogenesis; and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be part of beta-catenin destruction complex and beta-catenin-ICAT complex. Predicted to be active in cytosol and nucleus. Orthologous to human CTNNBIP1 (catenin beta interacting protein 1); PARTICIPATES IN Wnt signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta-catenin-interacting protein 1; LOC503000; MGC112803; similar to beta-catenin-interacting protein ICAT
RGD Orthologs
Human
Mouse
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,245,019 - 165,293,994 (+)NCBIGRCr8
mRatBN7.25159,961,961 - 160,010,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,961,928 - 160,010,939 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,678,674 - 162,727,565 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,498,802 - 164,547,740 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,455,166 - 164,504,103 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,464,170 - 166,513,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,464,252 - 166,513,027 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,110,484 - 170,159,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,601,155 - 166,650,163 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5158,231,700 - 158,280,408 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctnnbip1RatCharcot-Marie-Tooth disease type 2  ISOCTNNBIP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2ClinVarPMID:28492532
Ctnnbip1Ratchromosome 1p36 deletion syndrome  ISOCTNNBIP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 1p36 deletion syndromeClinVar 
Ctnnbip1Ratimmunodeficiency 14  ISOCTNNBIP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency 14ClinVarPMID:28492532

1 to 20 of 75 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctnnbip1Rat1,2-dimethylhydrazine multiple interactionsISOCtnnbip1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CTNNBIP1 mRNACTDPMID:22206623
Ctnnbip1Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of CTNNBIP1 mRNACTDPMID:17557909
Ctnnbip1Rat17alpha-ethynylestradiol affects expressionISOCtnnbip1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of CTNNBIP1 mRNACTDPMID:17555576
Ctnnbip1Rat2,3',4,4',5-Pentachlorobiphenyl increases expressionISOCtnnbip1 (Mus musculus)64804642 more ...CTDPMID:31388691
Ctnnbip1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464AHR protein alternative form affects the reaction [Tetrachlorodibenzodioxin results in decreased expression of CTNNBIP1 mRNA]CTDPMID:21215274
Ctnnbip1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCtnnbip1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CTNNBIP1 mRNACTDPMID:21570461
Ctnnbip1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CTNNBIP1 mRNACTDPMID:21215274
Ctnnbip1Rat2-hydroxypropanoic acid decreases expressionISOCTNNBIP1 (Homo sapiens)6480464Lactic Acid results in decreased expression of CTNNBIP1 mRNACTDPMID:30851411
Ctnnbip1Rat2-methylcholine affects expressionISOCTNNBIP1 (Homo sapiens)6480464beta-methylcholine affects the expression of CTNNBIP1 mRNACTDPMID:21179406
Ctnnbip1Rat4,4'-diaminodiphenylmethane decreases expressionISOCtnnbip1 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of CTNNBIP1 mRNACTDPMID:18648102
Ctnnbip1Rat4,4'-sulfonyldiphenol decreases methylationISOCtnnbip1 (Mus musculus)6480464bisphenol S results in decreased methylation of CTNNBIP1 exonCTDPMID:33297965
Ctnnbip1Rat4-hydroxyphenyl retinamide increases expressionISOCtnnbip1 (Mus musculus)6480464Fenretinide results in increased expression of CTNNBIP1 mRNACTDPMID:28973697
Ctnnbip1Ratacrolein decreases expressionISOCtnnbip1 (Mus musculus)6480464Acrolein results in decreased expression of CTNNBIP1 mRNACTDPMID:18515264
Ctnnbip1Ratacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of CTNNBIP1 mRNACTDPMID:28959563
Ctnnbip1Ratall-trans-retinoic acid decreases expressionISOCTNNBIP1 (Homo sapiens)6480464Tretinoin results in decreased expression of CTNNBIP1 mRNACTDPMID:21934132
Ctnnbip1Ratamphetamine increases expressionEXP 6480464Amphetamine results in increased expression of CTNNBIP1 mRNACTDPMID:30779732
Ctnnbip1Ratarsenite(3-) increases expressionISOCtnnbip1 (Mus musculus)6480464arsenite results in increased expression of CTNNBIP1 mRNACTDPMID:18191166
Ctnnbip1Ratbenzo[a]pyrene multiple interactionsISOCtnnbip1 (Mus musculus)6480464Benzo(a)pyrene promotes the reaction [AHR protein binds to CTNNBIP1 promoter]CTDPMID:19654925
Ctnnbip1Ratbenzo[a]pyrene affects methylationISOCTNNBIP1 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of CTNNBIP1 5' UTRCTDPMID:27901495
Ctnnbip1Ratbenzo[a]pyrene decreases expressionISOCTNNBIP1 (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of CTNNBIP1 mRNACTDPMID:20064835 more ...

1 to 20 of 75 rows

Biological Process
1 to 20 of 34 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctnnbip1Ratanterior/posterior pattern specification acts_upstream_of_or_withinIEAUniProtKB:Q9JJN6 and ensembl:ENSMUSP000000308391600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratanterior/posterior pattern specification acts_upstream_of_or_withinISOCtnnbip1 (Mus musculus)1624291MGI:3045424 PMID:15148409RGDPMID:15148409
Ctnnbip1Ratbiological_process  ND 159840707/2010: no relevant rat dataRGD 
Ctnnbip1Ratbranching involved in ureteric bud morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q9JJN6 and ensembl:ENSMUSP000000308391600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratbranching involved in ureteric bud morphogenesis acts_upstream_of_or_withinISOCtnnbip1 (Mus musculus)1624291MGI:3045424 PMID:17803964RGDPMID:17803964
Ctnnbip1Ratnegative regulation of canonical Wnt signaling pathway involved_inISOCtnnbip1 (Mus musculus)1624291 PMID:10898789RGDPMID:10898789
Ctnnbip1Ratnegative regulation of canonical Wnt signaling pathway involved_inISOCTNNBIP1 (Homo sapiens)1624291 PMID:11751639 and PMID:18977368RGDPMID:11751639 and PMID:18977368
Ctnnbip1Ratnegative regulation of canonical Wnt signaling pathway involved_inIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratnegative regulation of canonical Wnt signaling pathway involved_inIEAUniProtKB:Q9JJN6 and ensembl:ENSMUSP000000308391600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratnegative regulation of DNA-binding transcription factor activity involved_inISOCtnnbip1 (Mus musculus)1624291 PMID:11751639RGDPMID:11751639
Ctnnbip1Ratnegative regulation of mesenchymal cell proliferation involved_inISOCTNNBIP1 (Homo sapiens)1624291 PMID:18977368RGDPMID:18977368
Ctnnbip1Ratnegative regulation of mesenchymal cell proliferation involved_inIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratnegative regulation of protein-containing complex assembly involved_inISOCtnnbip1 (Mus musculus)1624291 PMID:11751639RGDPMID:11751639
Ctnnbip1Ratnegative regulation of protein-containing complex assembly involved_inISOCTNNBIP1 (Homo sapiens)1624291 PMID:11751639RGDPMID:11751639
Ctnnbip1Ratnegative regulation of protein-containing complex assembly involved_inIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratnegative regulation of smooth muscle cell proliferation involved_inISOCtnnbip1 (Mus musculus)1624291 PMID:17122440RGDPMID:17122440
Ctnnbip1Ratnegative regulation of smooth muscle cell proliferation involved_inIEAUniProtKB:Q9JJN6 and ensembl:ENSMUSP000000308391600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratnegative regulation of transcription by RNA polymerase II involved_inISOCTNNBIP1 (Homo sapiens)1624291 PMID:11751639RGDPMID:11751639
Ctnnbip1Ratnegative regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIEAUniProtKB:Q9JJN6 and ensembl:ENSMUSP000000308391600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 34 rows

Cellular Component
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctnnbip1Ratbeta-catenin destruction complex part_ofISOCTNNBIP1 (Homo sapiens)1624291 PMID:16188939RGDPMID:16188939
Ctnnbip1Ratbeta-catenin destruction complex part_ofIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratbeta-catenin destruction complex part_ofIBAPANTHER:PTN002932292 and UniProtKB:Q9NSA31600115GO_REF:0000033GO_CentralGO_REF:0000033
Ctnnbip1Ratbeta-catenin-ICAT complex part_ofISOCtnnbip1 (Mus musculus)1624291 PMID:10898789RGDPMID:10898789
Ctnnbip1Ratbeta-catenin-ICAT complex part_ofIEAUniProtKB:Q9JJN6 and ensembl:ENSMUSP000000308391600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratcytoplasm located_inISOCTNNBIP1 (Homo sapiens)1624291 PMID:19569129RGDPMID:19569129
Ctnnbip1Ratcytoplasm located_inIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratcytosol located_inISOCTNNBIP1 (Homo sapiens)1624291 PMID:18287330RGDPMID:18287330
Ctnnbip1Ratcytosol is_active_inIBAPANTHER:PTN002932292 and UniProtKB:Q9NSA31600115GO_REF:0000033GO_CentralGO_REF:0000033
Ctnnbip1Ratcytosol located_inIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratnucleus located_inIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratnucleus is_active_inIBAMGI:1915756 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ctnnbip1Ratnucleus located_inISOCTNNBIP1 (Homo sapiens)1624291 PMID:18287330 and PMID:19569129RGDPMID:18287330 and PMID:19569129
1 to 13 of 13 rows

Molecular Function
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctnnbip1Ratarmadillo repeat domain binding enablesISOCTNNBIP1 (Homo sapiens)1624291UniProtKB:Q02248 and PMID:12408825RGDPMID:12408825
Ctnnbip1Ratarmadillo repeat domain binding enablesIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratbeta-catenin binding enablesISOCTNNBIP1 (Homo sapiens)1624291UniProtKB:P35222 more ...RGDPMID:12408825 and PMID:18287330
Ctnnbip1Ratbeta-catenin binding enablesIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratbeta-catenin binding enablesIEAUniProtKB:Q9JJN6 and ensembl:ENSMUSP000000308391600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Ratbeta-catenin binding enablesISOCtnnbip1 (Mus musculus)1624291PR:Q02248 more ...RGDPMID:12408824 and PMID:12874278
Ctnnbip1Ratbeta-catenin binding enablesIBAMGI:1915756 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ctnnbip1Ratbeta-catenin binding enablesIEAInterPro:IPR009428 and InterPro:IPR0369111600115GO_REF:0000002InterProGO_REF:0000002
Ctnnbip1Ratprotein binding enablesISOCTNNBIP1 (Homo sapiens)1624291UniProtKB:P0DPK4 more ...RGDPMID:12408824 more ...
Ctnnbip1Ratprotein binding enablesISOCtnnbip1 (Mus musculus)1624291PR:Q02248 PMID:10898789RGDPMID:10898789
Ctnnbip1Rattranscription coactivator binding enablesIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Rattranscription coactivator binding enablesISOCTNNBIP1 (Homo sapiens)1624291UniProtKB:P35222 and PMID:11751639RGDPMID:11751639
Ctnnbip1Rattranscription regulator inhibitor activity enablesIEAUniProtKB:Q9NSA3 and ensembl:ENSP000003664741600115GO_REF:0000107EnsemblGO_REF:0000107
Ctnnbip1Rattranscription regulator inhibitor activity enablesISOCTNNBIP1 (Homo sapiens)1624291 PMID:11751639RGDPMID:11751639
1 to 14 of 14 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctnnbip1RatWnt signaling pathway  IEA 6907045 KEGGrno:04310

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:10898789   PMID:11751639   PMID:12408824   PMID:12408825   PMID:12874278   PMID:15148409   PMID:16188939   PMID:16678101   PMID:17122440   PMID:17803964   PMID:18287330   PMID:18977368  
PMID:19569129   PMID:22871113  



Ctnnbip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,245,019 - 165,293,994 (+)NCBIGRCr8
mRatBN7.25159,961,961 - 160,010,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,961,928 - 160,010,939 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,678,674 - 162,727,565 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,498,802 - 164,547,740 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,455,166 - 164,504,103 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,464,170 - 166,513,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,464,252 - 166,513,027 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,110,484 - 170,159,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,601,155 - 166,650,163 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5158,231,700 - 158,280,408 (+)NCBICelera
Cytogenetic Map5q36NCBI
CTNNBIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,848,276 - 9,910,269 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,848,276 - 9,910,336 (-)EnsemblGRCh38hg38GRCh38
GRCh3719,908,334 - 9,970,327 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,830,921 - 9,892,903 (-)NCBINCBI36Build 36hg18NCBI36
Build 3419,842,599 - 9,904,582NCBI
Celera19,019,961 - 9,067,271 (-)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef19,064,315 - 9,126,095 (-)NCBIHuRef
CHM1_119,896,913 - 9,959,080 (-)NCBICHM1_1
T2T-CHM13v2.019,391,187 - 9,453,193 (-)NCBIT2T-CHM13v2.0
Ctnnbip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,602,698 - 149,650,894 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,602,693 - 149,650,894 (+)EnsemblGRCm39 Ensembl
GRCm384149,518,241 - 149,566,437 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,518,236 - 149,566,437 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,892,350 - 148,940,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,362,043 - 148,410,525 (+)NCBIMGSCv36mm8
Celera4151,781,834 - 151,831,616 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.66NCBI
CTNNBIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,310,966 - 218,373,080 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11216,956,584 - 217,018,714 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl19,846,511 - 9,882,049 (-)Ensemblpanpan1.1panPan2
CTNNBIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,184,936 - 70,241,477 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,184,935 - 70,241,560 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CTNNBIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,861,266 - 121,921,541 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20121,892,415 - 121,921,621 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605425,787,892 - 25,851,657 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.

.
Variants in Ctnnbip1
205 total Variants

Predicted Target Of
Summary Value
Count of predictions:243
Count of miRNA genes:155
Interacting mature miRNAs:193
Transcripts:ENSRNOT00000055562
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat

1 to 10 of 24 rows
D5Rat243  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85165,261,669 - 165,261,808 (+)Marker Load Pipeline
mRatBN7.25159,978,616 - 159,978,755 (+)MAPPERmRatBN7.2
Rnor_6.05166,481,145 - 166,481,283NCBIRnor6.0
Rnor_5.05170,127,436 - 170,127,574UniSTSRnor5.0
RGSC_v3.45166,617,730 - 166,617,869RGDRGSC3.4
RGSC_v3.45166,617,731 - 166,617,869UniSTSRGSC3.4
RGSC_v3.15166,627,918 - 166,628,057RGD
Celera5158,248,259 - 158,248,398UniSTS
SHRSP x BN Map596.6799UniSTS
SHRSP x BN Map596.6799RGD
Cytogenetic Map5q36UniSTS
RH129684  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,010,714 - 160,010,894 (+)MAPPERmRatBN7.2
Rnor_6.05166,512,803 - 166,512,982NCBIRnor6.0
Rnor_5.05170,159,094 - 170,159,273UniSTSRnor5.0
RGSC_v3.45166,649,929 - 166,650,108UniSTSRGSC3.4
Celera5158,280,184 - 158,280,363UniSTS
RH 3.4 Map51114.3UniSTS
Cytogenetic Map5q36UniSTS
RH130314  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,010,709 - 160,010,890 (+)MAPPERmRatBN7.2
Rnor_6.05166,512,798 - 166,512,978NCBIRnor6.0
Rnor_5.05170,159,089 - 170,159,269UniSTSRnor5.0
RGSC_v3.45166,649,924 - 166,650,104UniSTSRGSC3.4
Celera5158,280,179 - 158,280,359UniSTS
RH 3.4 Map51122.8UniSTS
Cytogenetic Map5q36UniSTS
AU046495  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85165,261,670 - 165,261,849 (+)Marker Load Pipeline
mRatBN7.25159,978,617 - 159,978,796 (+)MAPPERmRatBN7.2
Rnor_6.05166,481,146 - 166,481,324NCBIRnor6.0
Rnor_5.05170,127,437 - 170,127,615UniSTSRnor5.0
RGSC_v3.45166,617,732 - 166,617,910UniSTSRGSC3.4
Celera5158,248,260 - 158,248,439UniSTS
Cytogenetic Map5q36UniSTS
RH140891  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,009,153 - 160,009,338 (+)MAPPERmRatBN7.2
Rnor_6.05166,511,242 - 166,511,426NCBIRnor6.0
Rnor_5.05170,157,533 - 170,157,717UniSTSRnor5.0
RGSC_v3.45166,648,368 - 166,648,552UniSTSRGSC3.4
Celera5158,278,623 - 158,278,807UniSTS
RH 3.4 Map51116.6UniSTS
Cytogenetic Map5q36UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000055562   ⟹   ENSRNOP00000052425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,962,045 - 160,010,939 (+)Ensembl
Rnor_6.0 Ensembl5166,464,252 - 166,513,027 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093757   ⟹   ENSRNOP00000077157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,961,928 - 160,010,939 (+)Ensembl
RefSeq Acc Id: NM_001173388   ⟹   NP_001166859
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,245,098 - 165,293,991 (+)NCBI
mRatBN7.25159,962,045 - 160,010,939 (+)NCBI
Rnor_6.05166,464,252 - 166,513,027 (+)NCBI
Rnor_5.05170,110,484 - 170,159,320 (+)NCBI
Celera5158,231,700 - 158,280,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239436   ⟹   XP_006239498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,245,019 - 165,293,994 (+)NCBI
mRatBN7.25159,961,961 - 160,010,942 (+)NCBI
Rnor_6.05166,464,170 - 166,513,030 (+)NCBI
Rnor_5.05170,110,484 - 170,159,320 (+)NCBI
Sequence:
Protein RefSeqs NP_001166859 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239498 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98773 (Get FASTA)   NCBI Sequence Viewer  
  EDL81167 (Get FASTA)   NCBI Sequence Viewer  
  EDL81168 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000052425
  ENSRNOP00000052425.1
  ENSRNOP00000077157.1
RefSeq Acc Id: NP_001166859   ⟸   NM_001173388
- UniProtKB: Q4KM58 (UniProtKB/TrEMBL),   F7FAS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239498   ⟸   XM_006239436
- Peptide Label: isoform X1
- UniProtKB: Q4KM58 (UniProtKB/TrEMBL),   F7FAS9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052425   ⟸   ENSRNOT00000055562
Ensembl Acc Id: ENSRNOP00000077157   ⟸   ENSRNOT00000093757
Beta-catenin-interacting ICAT

Name Modeler Protein Id AA Range Protein Structure
AF-Q4KM58-F1-model_v2 AlphaFold Q4KM58 1-81 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694274
Promoter ID:EPDNEW_R4799
Type:initiation region
Name:Ctnnbip1_1
Description:catenin, beta-interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05166,464,227 - 166,464,287EPDNEW


1 to 19 of 19 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-39128 BioCyc
Ensembl Genes ENSRNOG00000016313 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055562 ENTREZGENE
  ENSRNOT00000055562.3 UniProtKB/TrEMBL
  ENSRNOT00000093757.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.490 UniProtKB/TrEMBL
InterPro ICAT UniProtKB/TrEMBL
  ICAT_sf UniProtKB/TrEMBL
KEGG Report rno:503000 UniProtKB/TrEMBL
NCBI Gene 503000 ENTREZGENE
PANTHER BETA-CATENIN-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR47142 UniProtKB/TrEMBL
Pfam ICAT UniProtKB/TrEMBL
PhenoGen Ctnnbip1 PhenoGen
RatGTEx ENSRNOG00000016313 RatGTEx
Superfamily-SCOP ICAT UniProtKB/TrEMBL
UniProt A0A8I5Y0T5_RAT UniProtKB/TrEMBL
  F7FAS9 ENTREZGENE, UniProtKB/TrEMBL
  Q4KM58 ENTREZGENE, UniProtKB/TrEMBL
1 to 19 of 19 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Ctnnbip1  catenin, beta-interacting protein 1  LOC503000  similar to beta-catenin-interacting protein ICAT  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC503000  similar to beta-catenin-interacting protein ICAT      Symbol and Name status set to provisional 70820 PROVISIONAL