Epb41l5 (erythrocyte membrane protein band 4.1 like 5) - Rat Genome Database

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Gene: Epb41l5 (erythrocyte membrane protein band 4.1 like 5) Rattus norvegicus
Analyze
Symbol: Epb41l5
Name: erythrocyte membrane protein band 4.1 like 5
RGD ID: 1311366
Description: Predicted to enable protein domain specific binding activity. Predicted to be involved in actomyosin structure organization and epithelial to mesenchymal transition. Predicted to act upstream of or within several processes, including chordate embryonic development; embryonic foregut morphogenesis; and mesoderm morphogenesis. Predicted to be located in several cellular components, including focal adhesion; nucleoplasm; and ruffle membrane. Predicted to be active in cytoskeleton. Orthologous to human EPB41L5 (erythrocyte membrane protein band 4.1 like 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: band 4.1-like protein 5; Epb4.1l5; erythrocyte membrane protein band 4.1-like 5; erythrocyte protein band 4.1-like 5; LOC304733; MGC109531
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,221,705 - 33,321,400 (-)NCBIGRCr8
mRatBN7.21330,670,792 - 30,770,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,669,764 - 30,768,360 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,252,174 - 33,349,643 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,540,015 - 34,637,481 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01331,814,092 - 31,911,557 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01335,622,472 - 35,673,449 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,580,098 - 35,668,968 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01340,736,725 - 40,787,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,373,377 - 32,426,745 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11332,376,201 - 32,429,569 (-)NCBI
Celera1330,609,949 - 30,662,208 (-)NCBICelera
Cytogenetic Map13q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[ghi]perylene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
formaldehyde  (ISO)
geldanamycin  (ISO)
hydrogen peroxide  (ISO)
leflunomide  (EXP)
mercury dibromide  (ISO)
methapyrilene  (EXP)
N(4)-hydroxycytidine  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-ethyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
PCB138  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15755804   PMID:17507402   PMID:18794329   PMID:20103536   PMID:20678497  


Genomics

Comparative Map Data
Epb41l5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,221,705 - 33,321,400 (-)NCBIGRCr8
mRatBN7.21330,670,792 - 30,770,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,669,764 - 30,768,360 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,252,174 - 33,349,643 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,540,015 - 34,637,481 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01331,814,092 - 31,911,557 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01335,622,472 - 35,673,449 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,580,098 - 35,668,968 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01340,736,725 - 40,787,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,373,377 - 32,426,745 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11332,376,201 - 32,429,569 (-)NCBI
Celera1330,609,949 - 30,662,208 (-)NCBICelera
Cytogenetic Map13q11NCBI
EPB41L5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,013,077 - 120,179,119 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,013,077 - 120,179,119 (+)EnsemblGRCh38hg38GRCh38
GRCh372120,770,653 - 120,936,695 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362120,487,139 - 120,653,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 342120,486,898 - 120,652,924NCBI
Celera2114,097,494 - 114,263,547 (+)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2113,095,033 - 113,261,073 (+)NCBIHuRef
CHM1_12120,775,048 - 120,941,099 (+)NCBICHM1_1
T2T-CHM13v2.02120,447,844 - 120,613,882 (+)NCBIT2T-CHM13v2.0
Epb41l5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,472,762 - 119,576,826 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,472,767 - 119,576,730 (-)EnsemblGRCm39 Ensembl
GRCm381119,545,032 - 119,649,096 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,545,037 - 119,649,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,441,610 - 121,545,577 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,375,677 - 121,476,482 (-)NCBIMGSCv36mm8
Celera1122,204,130 - 122,307,894 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.32NCBI
Epb41l5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554599,641,884 - 9,784,173 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554599,641,926 - 9,783,718 (-)NCBIChiLan1.0ChiLan1.0
EPB41L5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21322,011,547 - 22,180,955 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B22,026,559 - 22,195,925 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B6,945,289 - 7,111,595 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B120,521,139 - 120,687,209 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B120,521,145 - 120,687,209 (+)Ensemblpanpan1.1panPan2
EPB41L5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11929,916,994 - 30,063,243 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1929,921,636 - 30,063,216 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1930,241,913 - 30,319,328 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01931,292,585 - 31,438,670 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1931,295,033 - 31,438,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11930,047,561 - 30,124,750 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01930,217,313 - 30,294,837 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01931,402,865 - 31,477,654 (-)NCBIUU_Cfam_GSD_1.0
Epb41l5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530391,174,199 - 91,288,156 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,329,409 - 50,443,626 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646950,329,564 - 50,443,532 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,159,223 - 31,295,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,159,214 - 31,295,891 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,469,281 - 36,530,372 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,113,695 - 10,288,003 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,121,075 - 10,287,954 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606112,405,079 - 12,570,511 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41l5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473224,908,723 - 25,088,244 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473224,908,711 - 25,088,246 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Epb41l5
464 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:161
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000003428, ENSRNOT00000042862
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat

Markers in Region
D13Hmgc37  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21330,737,550 - 30,737,765 (+)MAPPERmRatBN7.2
Rnor_6.01335,643,050 - 35,643,266NCBIRnor6.0
Rnor_5.01340,757,538 - 40,757,754UniSTSRnor5.0
RGSC_v3.41332,396,527 - 32,396,743UniSTSRGSC3.4
Celera1330,632,228 - 30,632,444UniSTS
Cytogenetic Map13q11UniSTS
RH127907  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21330,715,861 - 30,716,052 (+)MAPPERmRatBN7.2
Rnor_6.01335,622,682 - 35,622,872NCBIRnor6.0
Rnor_5.01340,736,935 - 40,737,125UniSTSRnor5.0
RGSC_v3.41332,373,587 - 32,373,777UniSTSRGSC3.4
Celera1330,610,159 - 30,610,349UniSTS
Cytogenetic Map13q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 31 19 5 19 55 35 34 11
Low 3 34 26 22 14 22 8 11 19 7 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC090012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000003428   ⟹   ENSRNOP00000003428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,715,655 - 30,767,884 (-)Ensembl
Rnor_6.0 Ensembl1335,623,031 - 35,668,968 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000042862   ⟹   ENSRNOP00000045431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,715,655 - 30,767,884 (-)Ensembl
Rnor_6.0 Ensembl1335,580,098 - 35,668,968 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111356   ⟹   ENSRNOP00000089466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,669,764 - 30,768,360 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113950   ⟹   ENSRNOP00000096407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,669,764 - 30,768,360 (-)Ensembl
RefSeq Acc Id: NM_001012023   ⟹   NP_001012023
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,268,449 - 33,320,678 (-)NCBI
mRatBN7.21330,715,652 - 30,767,884 (-)NCBI
Rnor_6.01335,622,472 - 35,673,449 (-)NCBI
Rnor_5.01340,736,725 - 40,787,937 (-)NCBI
RGSC_v3.41332,373,377 - 32,426,745 (-)RGD
Celera1330,609,949 - 30,662,208 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401160   ⟹   NP_001388089
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,223,589 - 33,321,133 (-)NCBI
mRatBN7.21330,670,792 - 30,768,339 (-)NCBI
RefSeq Acc Id: XM_039090671   ⟹   XP_038946599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,320,922 (-)NCBI
mRatBN7.21330,673,052 - 30,768,137 (-)NCBI
RefSeq Acc Id: XM_039090673   ⟹   XP_038946601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,321,399 (-)NCBI
mRatBN7.21330,673,052 - 30,770,212 (-)NCBI
RefSeq Acc Id: XM_039090674   ⟹   XP_038946602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,320,922 (-)NCBI
mRatBN7.21330,673,052 - 30,768,137 (-)NCBI
RefSeq Acc Id: XM_039090675   ⟹   XP_038946603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,321,399 (-)NCBI
mRatBN7.21330,673,052 - 30,770,212 (-)NCBI
RefSeq Acc Id: XM_039090676   ⟹   XP_038946604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,320,922 (-)NCBI
mRatBN7.21330,673,052 - 30,768,137 (-)NCBI
RefSeq Acc Id: XM_039090677   ⟹   XP_038946605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,320,922 (-)NCBI
mRatBN7.21330,673,052 - 30,768,137 (-)NCBI
RefSeq Acc Id: XM_039090678   ⟹   XP_038946606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,321,399 (-)NCBI
mRatBN7.21330,673,052 - 30,770,212 (-)NCBI
RefSeq Acc Id: XM_039090679   ⟹   XP_038946607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,321,399 (-)NCBI
mRatBN7.21330,673,052 - 30,770,212 (-)NCBI
RefSeq Acc Id: XM_039090680   ⟹   XP_038946608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,321,400 (-)NCBI
mRatBN7.21330,673,052 - 30,770,213 (-)NCBI
RefSeq Acc Id: XM_039090681   ⟹   XP_038946609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,263,733 - 33,321,394 (-)NCBI
mRatBN7.21330,711,786 - 30,770,206 (-)NCBI
RefSeq Acc Id: XM_063272230   ⟹   XP_063128300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,221,705 - 33,320,922 (-)NCBI
RefSeq Acc Id: XM_063272231   ⟹   XP_063128301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,263,733 - 33,321,395 (-)NCBI
RefSeq Acc Id: XM_063272232   ⟹   XP_063128302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,263,733 - 33,321,396 (-)NCBI
RefSeq Acc Id: XM_063272233   ⟹   XP_063128303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,263,733 - 33,321,396 (-)NCBI
RefSeq Acc Id: XM_063272234   ⟹   XP_063128304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,263,733 - 33,321,396 (-)NCBI
RefSeq Acc Id: XM_063272235   ⟹   XP_063128305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,263,733 - 33,320,922 (-)NCBI
RefSeq Acc Id: XM_063272236   ⟹   XP_063128306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,270,800 - 33,321,393 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001012023   ⟸   NM_001012023
- Peptide Label: isoform 2
- UniProtKB: D3ZK45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000045431   ⟸   ENSRNOT00000042862
RefSeq Acc Id: ENSRNOP00000003428   ⟸   ENSRNOT00000003428
RefSeq Acc Id: XP_038946608   ⟸   XM_039090680
- Peptide Label: isoform X2
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946601   ⟸   XM_039090673
- Peptide Label: isoform X1
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946607   ⟸   XM_039090679
- Peptide Label: isoform X1
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946606   ⟸   XM_039090678
- Peptide Label: isoform X1
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946603   ⟸   XM_039090675
- Peptide Label: isoform X1
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946599   ⟸   XM_039090671
- Peptide Label: isoform X1
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946604   ⟸   XM_039090676
- Peptide Label: isoform X1
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946605   ⟸   XM_039090677
- Peptide Label: isoform X1
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946602   ⟸   XM_039090674
- Peptide Label: isoform X1
- UniProtKB: Q5FVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946609   ⟸   XM_039090681
- Peptide Label: isoform X3
- UniProtKB: D3ZK45 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089466   ⟸   ENSRNOT00000111356
RefSeq Acc Id: ENSRNOP00000096407   ⟸   ENSRNOT00000113950
RefSeq Acc Id: NP_001388089   ⟸   NM_001401160
- Peptide Label: isoform 1
RefSeq Acc Id: XP_063128300   ⟸   XM_063272230
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063128304   ⟸   XM_063272234
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128303   ⟸   XM_063272233
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128302   ⟸   XM_063272232
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128301   ⟸   XM_063272231
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128305   ⟸   XM_063272235
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128306   ⟸   XM_063272236
- Peptide Label: isoform X4
Protein Domains
FERM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVG2-F1-model_v2 AlphaFold Q5FVG2 1-731 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311366 AgrOrtholog
BioCyc Gene G2FUF-18519 BioCyc
Ensembl Genes ENSRNOG00000002538 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003428.6 UniProtKB/TrEMBL
  ENSRNOT00000042862 ENTREZGENE
  ENSRNOT00000042862.6 UniProtKB/Swiss-Prot
  ENSRNOT00000111356 ENTREZGENE
  ENSRNOT00000111356.1 UniProtKB/Swiss-Prot
  ENSRNOT00000113950.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7324591 IMAGE-MGC_LOAD
InterPro Band_41_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_central UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:304733 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109531 IMAGE-MGC_LOAD
NCBI Gene 304733 ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23280:SF15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FERM_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF08736 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Epb41l5 PhenoGen
PRINTS BAND41 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002538 RatGTEx
SMART B41 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM01195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47031 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AQR4_RAT UniProtKB/TrEMBL
  D3ZK45 ENTREZGENE, UniProtKB/TrEMBL
  E41L5_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-18 Epb41l5  erythrocyte membrane protein band 4.1 like 5  Epb4.1l5  erythrocyte membrane protein band 4.1-like 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-04 Epb4.1l5  erythrocyte membrane protein band 4.1-like 5  Epb4.1l5  erythrocyte membrane protein band 4.1 like 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-01 Epb4.1l5  erythrocyte membrane protein band 4.1 like 5  Epb4.1l5  erythrocyte protein band 4.1-like 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Epb4.1l5  erythrocyte protein band 4.1-like 5  Epb4.1l5_predicted  erythrocyte protein band 4.1-like 5 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Epb4.1l5_predicted  erythrocyte protein band 4.1-like 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED