EPB41L5 (erythrocyte membrane protein band 4.1 like 5)

Gene: EPB41L5 (erythrocyte membrane protein band 4.1 like 5) Canis lupus familiaris

Analyze

Symbol:

EPB41L5

Name:

erythrocyte membrane protein band 4.1 like 5

RGD ID:

12136739

Description:

ENCODES a protein that exhibits cytoskeletal protein binding (inferred); protein domain specific binding (inferred); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); apical constriction (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN adherens junction (inferred); anchoring junction (inferred); cell leading edge (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

band 4.1-like protein 5; Band4.1-like5 protein; BE37

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	29,916,994 - 30,063,243 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	29,921,636 - 30,063,216 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	30,241,913 - 30,319,328 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	31,292,585 - 31,438,670 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	31,295,033 - 31,438,663 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	30,047,561 - 30,124,750 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	30,217,313 - 30,294,837 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	31,402,865 - 31,477,654 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IEA,ISO)

actomyosin structure organization (IBA,IEA,ISO)

apical constriction (IEA,ISO)

axial mesoderm development (IEA,ISO)

axial mesoderm morphogenesis (IEA,ISO)

cell morphogenesis (IEA,ISO)

cellular response to transforming growth factor beta stimulus (IEA,ISO)

ectoderm development (IEA,ISO)

embryonic foregut morphogenesis (IEA,ISO)

endoderm development (IEA,ISO)

epithelial cell morphogenesis (IEA,ISO)

epithelial to mesenchymal transition (IEA)

in utero embryonic development (IEA,ISO)

left/right axis specification (IEA,ISO)

mesoderm development (IEA,ISO)

mesoderm migration involved in gastrulation (IEA,ISO)

negative regulation of cell-cell adhesion (IEA,ISO)

neural plate morphogenesis (IEA,ISO)

paraxial mesoderm development (IEA,ISO)

positive regulation of cell-matrix adhesion (IEA,ISO)

positive regulation of epithelial cell migration (IEA,ISO)

positive regulation of focal adhesion assembly (IEA,ISO)

post-transcriptional regulation of gene expression (IEA,ISO)

regulation of establishment of protein localization (IEA,ISO)

somite rostral/caudal axis specification (IEA,ISO)

somitogenesis (IEA,ISO)

substrate-dependent cell migration, cell attachment to substrate (IEA,ISO)

unidimensional cell growth (IEA,ISO)

Cellular Component

adherens junction (IEA)

anchoring junction (IEA)

cell leading edge (IEA)

cytoplasm (IEA)

cytoskeleton (IBA,IEA)

cytosol (IEA)

focal adhesion (IEA)

nucleoplasm (IEA)

photoreceptor inner segment (IEA)

plasma membrane (IEA)

ruffle membrane (IEA)

Molecular Function

cytoskeletal protein binding (IEA)

protein binding (ISO)

protein domain specific binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:37756605

Genomics

Comparative Map Data

EPB41L5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	29,916,994 - 30,063,243 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	29,921,636 - 30,063,216 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	30,241,913 - 30,319,328 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	31,292,585 - 31,438,670 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	31,295,033 - 31,438,663 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	30,047,561 - 30,124,750 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	30,217,313 - 30,294,837 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	31,402,865 - 31,477,654 (-)	NCBI		UU_Cfam_GSD_1.0

EPB41L5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	120,013,077 - 120,179,119 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	120,013,077 - 120,179,119 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	120,770,653 - 120,936,695 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	120,487,139 - 120,653,165 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	120,486,898 - 120,652,924	NCBI
Celera	2	114,097,494 - 114,263,547 (+)	NCBI		Celera
Cytogenetic Map	2	q14.2	NCBI
HuRef	2	113,095,033 - 113,261,073 (+)	NCBI		HuRef
CHM1_1	2	120,775,048 - 120,941,099 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	120,447,844 - 120,613,882 (+)	NCBI		T2T-CHM13v2.0

Epb41l5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	119,472,762 - 119,576,826 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	119,472,767 - 119,576,730 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	119,545,032 - 119,649,096 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	119,545,037 - 119,649,000 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	121,441,610 - 121,545,577 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	121,375,677 - 121,476,482 (-)	NCBI		MGSCv36	mm8
Celera	1	122,204,130 - 122,307,894 (-)	NCBI		Celera
Cytogenetic Map	1	E2.3	NCBI
cM Map	1	52.32	NCBI

Epb41l5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	33,221,705 - 33,321,400 (-)	NCBI		GRCr8
mRatBN7.2	13	30,670,792 - 30,770,213 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	30,669,764 - 30,768,360 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	33,252,174 - 33,349,643 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	34,540,015 - 34,637,481 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	31,814,092 - 31,911,557 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	35,622,472 - 35,673,449 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	35,580,098 - 35,668,968 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	40,736,725 - 40,787,937 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	32,373,377 - 32,426,745 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	32,376,201 - 32,429,569 (-)	NCBI
Celera	13	30,609,949 - 30,662,208 (-)	NCBI		Celera
Cytogenetic Map	13	q11	NCBI

Epb41l5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	9,641,884 - 9,784,173 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955459	9,641,926 - 9,783,718 (-)	NCBI	ChiLan1.0	ChiLan1.0

EPB41L5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	22,011,547 - 22,180,955 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	22,026,559 - 22,195,925 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	6,945,289 - 7,111,595 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	120,521,139 - 120,687,209 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	120,521,145 - 120,687,209 (+)	Ensembl	panpan1.1		panPan2

Epb41l5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	91,174,199 - 91,288,156 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	50,329,409 - 50,443,626 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	50,329,564 - 50,443,532 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EPB41L5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	31,159,223 - 31,295,893 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	31,159,214 - 31,295,891 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	36,469,281 - 36,530,372 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EPB41L5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	10,113,695 - 10,288,003 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	10,121,075 - 10,287,954 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666061	12,405,079 - 12,570,511 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Epb41l5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	24,908,723 - 25,088,244 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	24,908,711 - 25,088,246 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in EPB41L5
1730 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			17	4		4	3		6		10
Low	5	5	5	2	6	2	3	6	6	8		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001002952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005631761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022405860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ401272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000007825 ⟹ ENSCAFP00000007253

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	19	29,921,636 - 30,063,216 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000046341 ⟹ ENSCAFP00000036195

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	19	29,921,643 - 30,063,216 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000049397 ⟹ ENSCAFP00000038660

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	19	29,985,792 - 30,063,216 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000066835 ⟹ ENSCAFP00000054534

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	19	29,921,636 - 30,063,216 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000068480 ⟹ ENSCAFP00000064841

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	19	29,921,636 - 30,063,216 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000076523 ⟹ ENSCAFP00000059205

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	19	29,921,636 - 30,054,098 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000089078 ⟹ ENSCAFP00000053001

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	19	29,985,792 - 30,063,216 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000092758 ⟹ ENSCAFP00000056504

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	19	29,921,636 - 30,063,216 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845048310 ⟹ ENSCAFP00845037898

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	19	31,295,033 - 31,438,663 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845048610 ⟹ ENSCAFP00845038130

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	19	31,295,033 - 31,438,663 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845048911 ⟹ ENSCAFP00845038368

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	19	31,295,033 - 31,438,663 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845048987 ⟹ ENSCAFP00845038431

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	19	31,295,033 - 31,438,663 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845049134 ⟹ ENSCAFP00845038550

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	19	31,297,234 - 31,438,663 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845049244 ⟹ ENSCAFP00845038645

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	19	31,361,184 - 31,438,643 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845049705 ⟹ ENSCAFP00845038981

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	19	31,361,184 - 31,438,643 (-)	Ensembl

RefSeq Acc Id:

NM_001002952 ⟹ NP_001002952

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	19	29,985,792 - 30,063,216 (-)	NCBI
Dog10K_Boxer_Tasha	19	30,241,913 - 30,319,328 (-)	NCBI
ROS_Cfam_1.0	19	31,361,184 - 31,438,643 (-)	NCBI
UMICH_Zoey_3.1	19	30,047,561 - 30,124,750 (-)	NCBI
UNSW_CanFamBas_1.0	19	30,217,313 - 30,294,837 (-)	NCBI
UU_Cfam_GSD_1.0	19	31,402,865 - 31,477,654 (-)	NCBI

Sequence:

show sequence

CGCCGGGTGGGCGTGCGCCTCAGGCCGCCATTTCTCGGCGTCCGCCGAGGAGCCGCCCCCTCCC
CGGGCTCGCCCGCGACCCGAGCGCCCGCGCCGCCGGCTCTCCGCGCTTCGGTCGCCAGCCCAGT
GAGAAAAATGCTGAGCTTCTTCCGTAGAACACTTGGGCGTCGGTCAATGCGTAAACATGCTGAG
AAGGAACGACTCCGAGAAGCTCAACGAGCTGCCACACACATTCCTGCAGCTGGAGACTCTAAGT
CTATCATCACATGTCGGGTTTCTCTTTTGGATGGTACTGATGTTAGTGTGGACTTGCCGAAAAA
AGCCAAAGGACAAGAGCTCTTTGATCAGATAATGTACCACTTGGACCTTATTGAAAGTGACTAT
TTTGGATTGAGATTTATGGATTCTGCACAAGTAGCACACTGGTTAGATGGTACAAAGAGCATCA
AAAAGCAAGTAAAAATTGGTTCACCCTATTGTCTGCATCTTCGAGTTAAATTTTATTCTTCAGA
ACCAAATAATCTTCGGGAAGAGCTAACCCGGTATTTATTTGTTCTTCAGTTAAAACAAGATATT
CTCAGTGGAAAATTAGAGTGTCCCTTTGATACAGCAGTTCAGTTGGCAGCTTATAATCTGCAAG
CTGAACTTGGTGACTATGATCTTGCTGAGCATAGTCCTGAACTTGTATCTGAGTTCAGGTTCGT
GCCCATTCAGACTGAAGAGATGGAGCTGGCTATTTTTGAGAAATGGAAGGAGTACAGAGGTCAA
ACACCAGCACAAGCTGAAACCAATTACCTGAATAAAGCCAAATGGTTAGAAATGTATGGGGTTG
ATATGCATGTAGTCAAGGCTAGAGATGGGAATGACTATAGCTTGGGACTAACTCCGACAGGAGT
CCTTGTTTTTGAAGGAGAGACCAAAATTGGCTTATTTTTTTGGCCCAAGATAACCAGATTGGAT
TTTAAGAAGAATAAATTAACTCTGGTGGTTGTAGAAGATGATGTTCAGGGAAAAGAGCAGGAGC
ATACATTTGTCTTTAGACTGGATCACCCAAAAGCATGCAAACATTTATGGAAATGTGCTGTGGA
ACATCATGCATTCTTTCGCCTTCGAGGTCCGGTCCAAAAGAGTTCTCATCGATCAGGATTTATT
CGACTAGGATCACGATTTAGATATAGTGGGAAAACTGAGTATCAGACCACAAAAACCAATAAAG
CAAGAAGATCAACATCCTTCGAAAGAAGACCCAGCAAACGATACTCTCGAAGAACTCTACAAAT
GAAAGCAAGTACAGCAAAACCTGAAGAACTCAGTGTTCACAATAATGTTTCAACTCAGAGTAAT
GGATCCCAACAGGCTTGGAGTGTGAGATCAACTCTGCCTGTGATTCCTTCTGTTCCCTCTGGTC
CTGTGCTGGCAGAGATAGAGAATCTTCCAAGGAATCCTGGATCAAACCAGTATGACAGGAAATG
GGTCTCTGCTGCCAGTGACTGCTGTCAACGTGGTGGAAACCAGTGGAACACAAGGGCCTTGTCC
CCACCCCAGCCTGCACATAGAAACTACACTGACTTTGTCCATGAGCACAATGTGAAGAATACAG
GAGTCCATCATGATGTTCATTTTCCCGGCCATGCAGCCATGACTGAGATATGAGTGTTAAGCCC
ATTAGACACTGGGACTCTTTGTCATGCAAGTTGATGGTATACATTTTCTATACATAGAGGATTG
ATCACATTAGGAGAATTTGGGAGAAATTACTTTATATTGAGTCACTAGTTGCATAGTATTGTTT
GTAATTCTGTGAAAGGGAAAAGAATGTGAAGAAAGCTGTATGCCATCAATGATAATCACACATG
CTTTTGTATTGAAAGGGTATGTATATATCATTGTGATTTTGGAAAGGTTTTTCATGATTTTAAC
ATGGTAATACATCACTCAGAAGATGTCTCAGGAGAAGGTTTGTGTTTGTGTAAAAGCTATCTGT
TATCCTCCCACACCATGCCATCCAAATAGATTGAGGTTAAAAGAATCAGATACACTAATCACAC
ACTGAGAAGGAAGCATATCCAGGCACAATGTATCAACCTTTGGTGATACTTTGATAAAACTGCT
TTTCTATGCATTTTTAATACTTCTACAATGACCCCATGCCTTAATTTCAGTTAAGTGCCTAAGA
TTCTATAATTGTAATTAATGTAATTTTTAGTTAAAAGCACTATTACTTTTTGACAAACCAGCAT
TTTATTTTACCAAAAGATCTAG

hide sequence

RefSeq Acc Id:

XM_038425552 ⟹ XP_038281480

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	19	31,292,585 - 31,438,670 (-)	NCBI

RefSeq Acc Id:

XM_038425553 ⟹ XP_038281481

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	19	31,292,585 - 31,438,171 (-)	NCBI

RefSeq Acc Id:

XM_038425554 ⟹ XP_038281482

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	19	31,292,585 - 31,438,670 (-)	NCBI

RefSeq Acc Id:

XM_038425555 ⟹ XP_038281483

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	19	31,292,585 - 31,438,670 (-)	NCBI

RefSeq Acc Id:

XM_038425556 ⟹ XP_038281484

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	19	31,292,585 - 31,438,670 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001002952	(Get FASTA)	NCBI Sequence Viewer
	XP_038281480	(Get FASTA)	NCBI Sequence Viewer
	XP_038281481	(Get FASTA)	NCBI Sequence Viewer
	XP_038281482	(Get FASTA)	NCBI Sequence Viewer
	XP_038281483	(Get FASTA)	NCBI Sequence Viewer
	XP_038281484	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAB96753	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000007253.3
	ENSCAFP00000036195.2
	ENSCAFP00000038660.1
	ENSCAFP00000053001.1
	ENSCAFP00000054534.1
	ENSCAFP00000056504.2
	ENSCAFP00000064841.1
	ENSCAFP00030034840.1
	ENSCAFP00030034988.1
	ENSCAFP00030035063.1
	ENSCAFP00030035174.1
	ENSCAFP00030035298.1
	ENSCAFP00030035377.1
	ENSCAFP00030035456.1
	ENSCAFP00040010964.1
	ENSCAFP00040011060.1
	ENSCAFP00040011127.1
	ENSCAFP00040011194.1
	ENSCAFP00040011266.1
	ENSCAFP00040011304.1
	ENSCAFP00040011357.1
	ENSCAFP00845037898.1
	ENSCAFP00845038130.1
	ENSCAFP00845038368
	ENSCAFP00845038368.1
	ENSCAFP00845038431
	ENSCAFP00845038431.1
	ENSCAFP00845038550
	ENSCAFP00845038550.1
	ENSCAFP00845038645
	ENSCAFP00845038645.1
	ENSCAFP00845038981.1
GenBank Protein	Q9MYU8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001002952 ⟸ NM_001002952

- UniProtKB:

Q9MYU8 (UniProtKB/Swiss-Prot), A0A8I3Q2A8 (UniProtKB/TrEMBL), A0A8P0ST24 (UniProtKB/TrEMBL), A0A8C0P8E4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLSFFRRTLGRRSMRKHAEKERLREAQRAATHIPAAGDSKSIITCRVSLLDGTDVSVDLPKKAK
GQELFDQIMYHLDLIESDYFGLRFMDSAQVAHWLDGTKSIKKQVKIGSPYCLHLRVKFYSSEPN
NLREELTRYLFVLQLKQDILSGKLECPFDTAVQLAAYNLQAELGDYDLAEHSPELVSEFRFVPI
QTEEMELAIFEKWKEYRGQTPAQAETNYLNKAKWLEMYGVDMHVVKARDGNDYSLGLTPTGVLV
FEGETKIGLFFWPKITRLDFKKNKLTLVVVEDDVQGKEQEHTFVFRLDHPKACKHLWKCAVEHH
AFFRLRGPVQKSSHRSGFIRLGSRFRYSGKTEYQTTKTNKARRSTSFERRPSKRYSRRTLQMKA
STAKPEELSVHNNVSTQSNGSQQAWSVRSTLPVIPSVPSGPVLAEIENLPRNPGSNQYDRKWVS
AASDCCQRGGNQWNTRALSPPQPAHRNYTDFVHEHNVKNTGVHHDVHFPGHAAMTEI

hide sequence

RefSeq Acc Id:

ENSCAFP00000038660 ⟸ ENSCAFT00000049397

RefSeq Acc Id:

ENSCAFP00000056504 ⟸ ENSCAFT00000092758

RefSeq Acc Id:

ENSCAFP00000064841 ⟸ ENSCAFT00000068480

RefSeq Acc Id:

ENSCAFP00000054534 ⟸ ENSCAFT00000066835

RefSeq Acc Id:

ENSCAFP00000059205 ⟸ ENSCAFT00000076523

RefSeq Acc Id:

ENSCAFP00000053001 ⟸ ENSCAFT00000089078

RefSeq Acc Id:

ENSCAFP00000036195 ⟸ ENSCAFT00000046341

RefSeq Acc Id:

ENSCAFP00000007253 ⟸ ENSCAFT00000007825

RefSeq Acc Id:	XP_038281483 ⟸ XM_038425555
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3S6A6 (UniProtKB/TrEMBL), A0A8P0PDH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281484 ⟸ XM_038425556
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I3PV54 (UniProtKB/TrEMBL), A0A8P0P3Z2 (UniProtKB/TrEMBL), A0A8C0QM50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281482 ⟸ XM_038425554
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3S6A6 (UniProtKB/TrEMBL), A0A8P0PDH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281480 ⟸ XM_038425552
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3Q1U8 (UniProtKB/TrEMBL), A0A8P0N7P6 (UniProtKB/TrEMBL), A0A8I3S6A6 (UniProtKB/TrEMBL), A0A8P0PDH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281481 ⟸ XM_038425553
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3Q1U8 (UniProtKB/TrEMBL), A0A8P0N7P6 (UniProtKB/TrEMBL), A0A8I3S6A6 (UniProtKB/TrEMBL), A0A8P0PDH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845038431 ⟸ ENSCAFT00845048987

RefSeq Acc Id:

ENSCAFP00845037898 ⟸ ENSCAFT00845048310

RefSeq Acc Id:

ENSCAFP00845038981 ⟸ ENSCAFT00845049705

RefSeq Acc Id:

ENSCAFP00845038645 ⟸ ENSCAFT00845049244

RefSeq Acc Id:

ENSCAFP00845038130 ⟸ ENSCAFT00845048610

RefSeq Acc Id:

ENSCAFP00845038550 ⟸ ENSCAFT00845049134

RefSeq Acc Id:

ENSCAFP00845038368 ⟸ ENSCAFT00845048911

Protein Domains

FERM

Promoters

RGD ID:

13686720

Promoter ID:

EPDNEW_C4787

Type:

multiple initiation site

Name:

EPB41L5_1

Description:

erythrocyte membrane protein band 4.1 like 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	19	30,063,233 - 30,063,293	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000004855	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030021703	UniProtKB/TrEMBL
	ENSCAFG00040006786	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSCAFG00845027396	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000007825.5	UniProtKB/TrEMBL
	ENSCAFT00000046341.3	UniProtKB/TrEMBL
	ENSCAFT00000049397.3	UniProtKB/TrEMBL
	ENSCAFT00000066835.2	UniProtKB/TrEMBL
	ENSCAFT00000068480.2	UniProtKB/TrEMBL
	ENSCAFT00000089078.2	UniProtKB/TrEMBL
	ENSCAFT00000092758.2	UniProtKB/TrEMBL
	ENSCAFT00030039935.1	UniProtKB/TrEMBL
	ENSCAFT00030040099.1	UniProtKB/TrEMBL
	ENSCAFT00030040184.1	UniProtKB/TrEMBL
	ENSCAFT00030040303.1	UniProtKB/TrEMBL
	ENSCAFT00030040442.1	UniProtKB/TrEMBL
	ENSCAFT00030040528.1	UniProtKB/TrEMBL
	ENSCAFT00030040621.1	UniProtKB/TrEMBL
	ENSCAFT00040012648.1	UniProtKB/TrEMBL
	ENSCAFT00040012761.1	UniProtKB/TrEMBL
	ENSCAFT00040012854.1	UniProtKB/TrEMBL
	ENSCAFT00040012935.1	UniProtKB/TrEMBL
	ENSCAFT00040013014.1	UniProtKB/TrEMBL
	ENSCAFT00040013060.1	UniProtKB/Swiss-Prot
	ENSCAFT00040013119.1	UniProtKB/TrEMBL
	ENSCAFT00845048310.1	UniProtKB/TrEMBL
	ENSCAFT00845048610.1	UniProtKB/TrEMBL
	ENSCAFT00845048911	ENTREZGENE
	ENSCAFT00845048911.1	UniProtKB/TrEMBL
	ENSCAFT00845048987	ENTREZGENE
	ENSCAFT00845048987.1	UniProtKB/TrEMBL
	ENSCAFT00845049134	ENTREZGENE
	ENSCAFT00845049134.1	UniProtKB/TrEMBL
	ENSCAFT00845049244	ENTREZGENE
	ENSCAFT00845049244.1	UniProtKB/TrEMBL
	ENSCAFT00845049705.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.80.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Band_41_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ez/rad/moesin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM-adjacent	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM/acyl-CoA-bd_prot_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_central	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_PH-like_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	cfa:403419	UniProtKB/Swiss-Prot
NCBI Gene	EPB41L5	ENTREZGENE
PANTHER	4.1 G PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR23280:SF15	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	FERM_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PF08736	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	BAND41	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ERMFAMILY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	FERM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	B41	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM01195	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF47031	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF54236	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8C0P0W1_CANLF	UniProtKB/TrEMBL
	A0A8C0P4B6_CANLF	UniProtKB/TrEMBL
	A0A8C0P8E4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0P8Y4_CANLF	UniProtKB/TrEMBL
	A0A8C0QBZ3_CANLF	UniProtKB/TrEMBL
	A0A8C0QM50	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QM93_CANLF	UniProtKB/TrEMBL
	A0A8C0RQR1_CANLF	UniProtKB/TrEMBL
	A0A8C0RZT9_CANLF	UniProtKB/TrEMBL
	A0A8I3PTU9_CANLF	UniProtKB/TrEMBL
	A0A8I3PV54	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PZ88_CANLF	UniProtKB/TrEMBL
	A0A8I3Q1U8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3Q2A8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3QEV5_CANLF	UniProtKB/TrEMBL
	A0A8I3S6A6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0N7P6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NNG9_CANLF	UniProtKB/TrEMBL
	A0A8P0P3Z2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PDH4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0ST24	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0T5I3_CANLF	UniProtKB/TrEMBL
	A0A8P0T8N7_CANLF	UniProtKB/TrEMBL
	E41L5_CANLF	UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID	VGNC:40398	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar