EPB41L5 (erythrocyte membrane protein band 4.1 like 5) - Rat Genome Database

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Gene: EPB41L5 (erythrocyte membrane protein band 4.1 like 5) Sus scrofa
Analyze
Symbol: EPB41L5
Name: erythrocyte membrane protein band 4.1 like 5
RGD ID: 14226972
Description: ENCODES a protein that exhibits cytoskeletal protein binding (inferred); protein domain specific binding (inferred); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); apical constriction (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell leading edge (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: band 4.1-like protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,159,223 - 31,295,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,159,214 - 31,295,891 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,469,281 - 36,530,372 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
EPB41L5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,159,223 - 31,295,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,159,214 - 31,295,891 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,469,281 - 36,530,372 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,013,077 - 120,179,119 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,013,077 - 120,179,119 (+)EnsemblGRCh38hg38GRCh38
GRCh372120,770,653 - 120,936,695 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362120,487,139 - 120,653,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 342120,486,898 - 120,652,924NCBI
Celera2114,097,494 - 114,263,547 (+)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2113,095,033 - 113,261,073 (+)NCBIHuRef
CHM1_12120,775,048 - 120,941,099 (+)NCBICHM1_1
T2T-CHM13v2.02120,447,844 - 120,613,882 (+)NCBIT2T-CHM13v2.0
Epb41l5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,472,762 - 119,576,826 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,472,767 - 119,576,730 (-)EnsemblGRCm39 Ensembl
GRCm381119,545,032 - 119,649,096 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,545,037 - 119,649,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,441,610 - 121,545,577 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,375,677 - 121,476,482 (-)NCBIMGSCv36mm8
Celera1122,204,130 - 122,307,894 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.32NCBI
Epb41l5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,221,705 - 33,321,400 (-)NCBIGRCr8
mRatBN7.21330,670,792 - 30,770,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,669,764 - 30,768,360 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,252,174 - 33,349,643 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,540,015 - 34,637,481 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01331,814,092 - 31,911,557 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01335,622,472 - 35,673,449 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,580,098 - 35,668,968 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01340,736,725 - 40,787,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,373,377 - 32,426,745 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11332,376,201 - 32,429,569 (-)NCBI
Celera1330,609,949 - 30,662,208 (-)NCBICelera
Cytogenetic Map13q11NCBI
Epb41l5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554599,641,884 - 9,784,173 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554599,641,926 - 9,783,718 (-)NCBIChiLan1.0ChiLan1.0
EPB41L5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21322,011,547 - 22,180,955 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B22,026,559 - 22,195,925 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B6,945,289 - 7,111,595 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B120,521,139 - 120,687,209 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B120,521,145 - 120,687,209 (+)Ensemblpanpan1.1panPan2
EPB41L5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11929,916,994 - 30,063,243 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1929,921,636 - 30,063,216 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1930,241,913 - 30,319,328 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01931,292,585 - 31,438,670 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1931,295,033 - 31,438,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11930,047,561 - 30,124,750 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01930,217,313 - 30,294,837 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01931,402,865 - 31,477,654 (-)NCBIUU_Cfam_GSD_1.0
Epb41l5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530391,174,199 - 91,288,156 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,329,409 - 50,443,626 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646950,329,564 - 50,443,532 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,113,695 - 10,288,003 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,121,075 - 10,287,954 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606112,405,079 - 12,570,511 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41l5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473224,908,723 - 25,088,244 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473224,908,711 - 25,088,246 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EPB41L5
3729 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 10 4 3 5 2 23 3 1
Below cutoff 2

Sequence


RefSeq Acc Id: ENSSSCT00000025582   ⟹   ENSSSCP00000023691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1531,163,596 - 31,295,893 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000036810   ⟹   ENSSSCP00000038315
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1531,225,840 - 31,295,843 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049249   ⟹   ENSSSCP00000048115
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1531,226,680 - 31,295,845 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000058948   ⟹   ENSSSCP00000036731
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1531,159,223 - 31,295,893 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079712   ⟹   ENSSSCP00000060154
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1531,159,223 - 31,295,893 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000100689   ⟹   ENSSSCP00000074836
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1531,225,840 - 31,295,843 (-)Ensembl
RefSeq Acc Id: XM_021075139   ⟹   XP_020930798
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11531,159,214 - 31,295,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021075140   ⟹   XP_020930799
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11531,159,214 - 31,295,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021075141   ⟹   XP_020930800
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11531,159,214 - 31,295,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021075142   ⟹   XP_020930801
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11531,159,214 - 31,277,908 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021075143   ⟹   XP_020930802
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11531,225,837 - 31,295,891 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020930800   ⟸   XM_021075141
- Peptide Label: isoform X2
- UniProtKB: A0A286ZYD4 (UniProtKB/TrEMBL),   A0A4X1SHC9 (UniProtKB/TrEMBL),   A0A8D1SYI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930798   ⟸   XM_021075139
- Peptide Label: isoform X1
- UniProtKB: A0A8D0HX46 (UniProtKB/TrEMBL),   A0A8D0WHB0 (UniProtKB/TrEMBL),   A0A8D1EGT4 (UniProtKB/TrEMBL),   A0A8D2C345 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930799   ⟸   XM_021075140
- Peptide Label: isoform X1
- UniProtKB: A0A8D0HX46 (UniProtKB/TrEMBL),   A0A8D0WHB0 (UniProtKB/TrEMBL),   A0A8D1EGT4 (UniProtKB/TrEMBL),   A0A8D2C345 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930801   ⟸   XM_021075142
- Peptide Label: isoform X3
- UniProtKB: A0A8D1A0J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930802   ⟸   XM_021075143
- Peptide Label: isoform X4
- UniProtKB: A0A4X1SHI2 (UniProtKB/TrEMBL),   A0A480QG38 (UniProtKB/TrEMBL),   A0A287A2Z5 (UniProtKB/TrEMBL),   A0A8D1JY36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000048115   ⟸   ENSSSCT00000049249
RefSeq Acc Id: ENSSSCP00000023691   ⟸   ENSSSCT00000025582
RefSeq Acc Id: ENSSSCP00000036731   ⟸   ENSSSCT00000058948
RefSeq Acc Id: ENSSSCP00000060154   ⟸   ENSSSCT00000079712
RefSeq Acc Id: ENSSSCP00000038315   ⟸   ENSSSCT00000036810
RefSeq Acc Id: ENSSSCP00000074836   ⟸   ENSSSCT00000100689
Protein Domains
FERM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039185 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005001575 UniProtKB/TrEMBL
  ENSSSCG00015055288 UniProtKB/TrEMBL
  ENSSSCG00025054955 UniProtKB/TrEMBL
  ENSSSCG00030031372 UniProtKB/TrEMBL
  ENSSSCG00035043576 UniProtKB/TrEMBL
  ENSSSCG00040039563 UniProtKB/TrEMBL
  ENSSSCG00050007184 UniProtKB/TrEMBL
  ENSSSCG00055007803 UniProtKB/TrEMBL
  ENSSSCG00060011942 UniProtKB/TrEMBL
  ENSSSCG00065025005 UniProtKB/TrEMBL
  ENSSSCG00070000633 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025582.4 UniProtKB/TrEMBL
  ENSSSCT00000036810 ENTREZGENE
  ENSSSCT00000036810.3 UniProtKB/TrEMBL
  ENSSSCT00000049249.3 UniProtKB/TrEMBL
  ENSSSCT00000058948 ENTREZGENE
  ENSSSCT00000058948.2 UniProtKB/TrEMBL
  ENSSSCT00000079712.2 UniProtKB/TrEMBL
  ENSSSCT00000100689.1 UniProtKB/TrEMBL
  ENSSSCT00005003170.1 UniProtKB/TrEMBL
  ENSSSCT00015074292.1 UniProtKB/TrEMBL
  ENSSSCT00025075240.1 UniProtKB/TrEMBL
  ENSSSCT00025075610.1 UniProtKB/TrEMBL
  ENSSSCT00025075966.1 UniProtKB/TrEMBL
  ENSSSCT00025076192.1 UniProtKB/TrEMBL
  ENSSSCT00030043580.1 UniProtKB/TrEMBL
  ENSSSCT00030043619.1 UniProtKB/TrEMBL
  ENSSSCT00035057976.1 UniProtKB/TrEMBL
  ENSSSCT00040053017.1 UniProtKB/TrEMBL
  ENSSSCT00040053203.1 UniProtKB/TrEMBL
  ENSSSCT00040053350.1 UniProtKB/TrEMBL
  ENSSSCT00050009826.1 UniProtKB/TrEMBL
  ENSSSCT00050009885.1 UniProtKB/TrEMBL
  ENSSSCT00050009898.1 UniProtKB/TrEMBL
  ENSSSCT00050009907.1 UniProtKB/TrEMBL
  ENSSSCT00055015276.1 UniProtKB/TrEMBL
  ENSSSCT00055015434.1 UniProtKB/TrEMBL
  ENSSSCT00055015528.1 UniProtKB/TrEMBL
  ENSSSCT00055015558.1 UniProtKB/TrEMBL
  ENSSSCT00060015603.1 UniProtKB/TrEMBL
  ENSSSCT00060015616.1 UniProtKB/TrEMBL
  ENSSSCT00060015621.1 UniProtKB/TrEMBL
  ENSSSCT00065033726.1 UniProtKB/TrEMBL
  ENSSSCT00065033781.1 UniProtKB/TrEMBL
  ENSSSCT00065033787.1 UniProtKB/TrEMBL
  ENSSSCT00065033793.1 UniProtKB/TrEMBL
  ENSSSCT00065033810.1 UniProtKB/TrEMBL
  ENSSSCT00070001386.1 UniProtKB/TrEMBL
  ENSSSCT00070001397.1 UniProtKB/TrEMBL
  ENSSSCT00070001445.1 UniProtKB/TrEMBL
  ENSSSCT00070001506.1 UniProtKB/TrEMBL
  ENSSSCT00070001512.1 UniProtKB/TrEMBL
  ENSSSCT00070001540.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene EPB41L5 ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/TrEMBL
  PTHR23280:SF15 UniProtKB/TrEMBL
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47031 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A286ZYD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A2Z5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AW31_PIG UniProtKB/TrEMBL
  A0A480QG38 ENTREZGENE
  A0A4X1SG48_PIG UniProtKB/TrEMBL
  A0A4X1SGE7_PIG UniProtKB/TrEMBL
  A0A4X1SGY5_PIG UniProtKB/TrEMBL
  A0A4X1SHC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SHI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2Q7R4_PIG UniProtKB/TrEMBL
  A0A8D0HX46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HY54_PIG UniProtKB/TrEMBL
  A0A8D0WHB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A0J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EGT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JY36 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KAZ1_PIG UniProtKB/TrEMBL
  A0A8D1SYI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2C345 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F6K7_PIG UniProtKB/TrEMBL
  I3LHZ2_PIG UniProtKB/TrEMBL
UniProt Secondary A0A480QG38 UniProtKB/TrEMBL
VGNC ID VGNC:97979 ENTREZGENE