Tdrd3 (tudor domain containing 3) - Rat Genome Database

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Gene: Tdrd3 (tudor domain containing 3) Rattus norvegicus
Analyze
Symbol: Tdrd3
Name: tudor domain containing 3
RGD ID: 1310126
Description: Predicted to enable chromatin binding activity; methylated histone binding activity; and transcription coactivator activity. Predicted to be involved in chromatin organization and positive regulation of DNA-templated transcription. Predicted to be located in Golgi apparatus; cytosol; and nucleoplasm. Predicted to be part of DNA topoisomerase III-beta-TDRD3 complex and exon-exon junction complex. Predicted to be active in nucleus. Orthologous to human TDRD3 (tudor domain containing 3); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306066; tudor domain-containing protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81569,748,754 - 69,911,605 (+)NCBIGRCr8
mRatBN7.21563,340,531 - 63,497,208 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1563,341,235 - 63,476,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1567,449,294 - 67,576,546 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01568,534,799 - 68,662,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01565,431,929 - 65,566,762 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01570,732,164 - 70,864,855 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1570,790,125 - 70,859,185 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01574,335,410 - 74,468,101 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41569,605,244 - 69,739,566 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11569,621,023 - 69,755,345 (+)NCBI
Celera1562,845,891 - 62,979,450 (+)NCBICelera
Cytogenetic Map15q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tdrd3Ratchromosome 13q14 deletion syndrome  ISOTDRD3 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 13q14 deletion syndromeClinVar 

1 to 20 of 70 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tdrd3Rat(-)-epigallocatechin 3-gallate multiple interactionsISOTDRD3 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of TDRD3 mRNACTDPMID:22079256
Tdrd3Rat1,2-dichloroethane decreases expressionISOTdrd3 (Mus musculus)6480464ethylene dichloride results in decreased expression of TDRD3 mRNACTDPMID:28960355
Tdrd3Rat1,2-dimethylhydrazine affects expressionISOTdrd3 (Mus musculus)64804641 and 2-Dimethylhydrazine affects the expression of TDRD3 mRNACTDPMID:22206623
Tdrd3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOTdrd3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of TDRD3 mRNACTDPMID:21570461
Tdrd3Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of TDRD3 mRNACTDPMID:33387578
Tdrd3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of TDRD3 mRNACTDPMID:32109520
Tdrd3Rat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:32109520
Tdrd3Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of TDRD3 mRNACTDPMID:21346803
Tdrd3Rat4-amino-2,6-dinitrotoluene affects expressionEXP 64804644-amino-2 and 6-dinitrotoluene affects the expression of TDRD3 mRNACTDPMID:21346803
Tdrd3Rat5-aza-2'-deoxycytidine affects expressionISOTDRD3 (Homo sapiens)6480464Decitabine affects the expression of TDRD3 mRNACTDPMID:23300844
Tdrd3Ratacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of TDRD3 mRNACTDPMID:28959563
Tdrd3Ratall-trans-retinoic acid decreases expressionISOTDRD3 (Homo sapiens)6480464Tretinoin results in decreased expression of TDRD3 mRNACTDPMID:15498508 and PMID:33167477
Tdrd3Ratantirheumatic drug increases expressionISOTDRD3 (Homo sapiens)6480464Antirheumatic Agents results in increased expression of TDRD3 mRNACTDPMID:24449571
Tdrd3Rataristolochic acid A decreases expressionISOTDRD3 (Homo sapiens)6480464aristolochic acid I results in decreased expression of TDRD3 mRNACTDPMID:33212167
Tdrd3Ratarsenite(3-) increases methylationISOTDRD3 (Homo sapiens)6480464arsenite results in increased methylation of TDRD3 promoterCTDPMID:23974009
Tdrd3Ratbenzo[a]pyrene multiple interactionsISOTdrd3 (Mus musculus)6480464Benzo(a)pyrene promotes the reaction [AHR protein binds to TDRD3 promoter]CTDPMID:19654925
Tdrd3Ratbenzo[a]pyrene affects methylationISOTDRD3 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of TDRD3 intronCTDPMID:30157460
Tdrd3Ratbenzo[a]pyrene decreases methylationISOTdrd3 (Mus musculus)6480464Benzo(a)pyrene results in decreased methylation of TDRD3 intronCTDPMID:27901495
Tdrd3Ratbenzo[a]pyrene increases expressionISOTdrd3 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of TDRD3 mRNACTDPMID:22228805
Tdrd3Ratbenzo[a]pyrene decreases expressionISOTdrd3 (Mus musculus)6480464Benzo(a)pyrene results in decreased expression of TDRD3 mRNACTDPMID:22228805

1 to 20 of 70 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tdrd3Ratbiological_process  ND 159840710/2014: no relevant rat dataRGD 
Tdrd3Ratchromatin organization involved_inIEAUniProtKB-KW:KW-01561600115GO_REF:0000043UniProtGO_REF:0000043
Tdrd3Ratpositive regulation of DNA-templated transcription involved_inIEAGO:00037131600115GO_REF:0000108GOCGO_REF:0000108

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tdrd3Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Tdrd3Ratcytosol located_inIEAUniProtKB:Q9H7E2 and ensembl:ENSP000003671131600115GO_REF:0000107EnsemblGO_REF:0000107
Tdrd3Ratcytosol located_inISOTDRD3 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Tdrd3RatDNA topoisomerase III-beta-TDRD3 complex part_ofISOTDRD3 (Homo sapiens) and UniProtKB:Q9H7E2-31624291 PMID:28176834RGDPMID:28176834
Tdrd3Ratexon-exon junction complex part_ofIEAUniProtKB:Q9H7E2 and ensembl:ENSP000003671131600115GO_REF:0000107EnsemblGO_REF:0000107
Tdrd3Ratexon-exon junction complex located_inISOTDRD3 (Homo sapiens)1624291 PMID:20930030RGDPMID:20930030
Tdrd3Ratexon-exon junction complex located_inISSUniProtKB:Q9H7E21600115GO_REF:0000024UniProtGO_REF:0000024
Tdrd3RatGolgi apparatus located_inIEAUniProtKB:Q9H7E2 and ensembl:ENSP000003671131600115GO_REF:0000107EnsemblGO_REF:0000107
Tdrd3RatGolgi apparatus located_inISOTDRD3 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Tdrd3Ratnucleoplasm located_inIEAUniProtKB:Q9H7E2 and ensembl:ENSP000003671131600115GO_REF:0000107EnsemblGO_REF:0000107
Tdrd3Ratnucleoplasm located_inISOTDRD3 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Tdrd3Ratnucleus located_inISSUniProtKB:Q9H7E21600115GO_REF:0000024UniProtGO_REF:0000024
Tdrd3Ratnucleus is_active_inIBACGD:CAL0000189598 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tdrd3Ratnucleus located_inISOTDRD3 (Homo sapiens) and UniProtKB:Q9H7E2-31624291 PMID:23912945RGDPMID:23912945
Tdrd3Ratnucleus located_inISOTDRD3 (Homo sapiens)1624291 PMID:21172665RGDPMID:21172665
Tdrd3Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
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Molecular Function
1 to 11 of 11 rows

  
1 to 11 of 11 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tdrd3Rathistone modification pathway   ISOTDRD3 (Homo sapiens)9479163 RGD 
Tdrd3Rathistone modification pathway   ISOTDRD3 (Homo sapiens)9479148 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Tudor: a versatile family of histone methylation 'readers'. Lu R and Wang GG, Trends Biochem Sci. 2013 Nov;38(11):546-55. doi: 10.1016/j.tibs.2013.08.002. Epub 2013 Sep 10.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Perceiving the epigenetic landscape through histone readers. Musselman CA, etal., Nat Struct Mol Biol. 2012 Dec;19(12):1218-27. doi: 10.1038/nsmb.2436.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
PMID:12477932   PMID:20930030   PMID:21172665   PMID:22658674   PMID:22681889   PMID:25931508  



Tdrd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81569,748,754 - 69,911,605 (+)NCBIGRCr8
mRatBN7.21563,340,531 - 63,497,208 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1563,341,235 - 63,476,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1567,449,294 - 67,576,546 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01568,534,799 - 68,662,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01565,431,929 - 65,566,762 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01570,732,164 - 70,864,855 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1570,790,125 - 70,859,185 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01574,335,410 - 74,468,101 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41569,605,244 - 69,739,566 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11569,621,023 - 69,755,345 (+)NCBI
Celera1562,845,891 - 62,979,450 (+)NCBICelera
Cytogenetic Map15q12NCBI
TDRD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381360,395,533 - 60,573,879 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1360,396,457 - 60,573,878 (+)EnsemblGRCh38hg38GRCh38
GRCh371360,970,591 - 61,148,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361359,911,823 - 60,046,012 (+)NCBINCBI36Build 36hg18NCBI36
Build 341359,869,122 - 60,046,012NCBI
Celera1341,929,733 - 42,107,133 (+)NCBICelera
Cytogenetic Map13q21.2NCBI
HuRef1341,662,317 - 41,839,768 (+)NCBIHuRef
CHM1_11360,938,267 - 61,115,685 (+)NCBICHM1_1
T2T-CHM13v2.01359,615,225 - 59,793,547 (+)NCBIT2T-CHM13v2.0
Tdrd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391487,647,598 - 87,782,944 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1487,654,075 - 87,782,940 (+)EnsemblGRCm39 Ensembl
GRCm381487,416,178 - 87,545,508 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1487,416,639 - 87,545,504 (+)EnsemblGRCm38mm10GRCm38
MGSCv371487,816,390 - 87,945,315 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361486,248,429 - 86,377,251 (+)NCBIMGSCv36mm8
Celera1484,929,172 - 85,068,169 (+)NCBICelera
Cytogenetic Map14E1NCBI
cM Map1444.17NCBI
Tdrd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540444,328,795 - 44,457,784 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540444,329,159 - 44,457,958 (-)NCBIChiLan1.0ChiLan1.0
TDRD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21461,913,781 - 62,095,454 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11360,505,859 - 60,687,137 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01341,568,080 - 41,750,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11360,289,702 - 60,470,245 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1360,290,518 - 60,470,245 (+)Ensemblpanpan1.1panPan2
TDRD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12216,287,721 - 16,449,842 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2216,288,473 - 16,444,635 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2216,265,095 - 16,427,920 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02216,524,378 - 16,687,132 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2216,525,132 - 16,687,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12216,224,234 - 16,386,787 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02216,249,914 - 16,412,810 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02216,264,401 - 16,386,815 (+)NCBIUU_Cfam_GSD_1.0
Tdrd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945135,830,370 - 135,931,283 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493651111,258,898 - 11,348,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1133,258,063 - 33,440,123 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11133,257,556 - 33,440,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21134,988,674 - 35,171,255 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1338,174,141 - 38,361,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl338,174,990 - 38,361,622 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660575,331,867 - 5,524,367 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tdrd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474821,656,003 - 21,815,589 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tdrd3
304 total Variants

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:117
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000012440
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat

1 to 10 of 24 rows
RH132759  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21563,446,011 - 63,446,191 (+)MAPPERmRatBN7.2
Rnor_6.01570,834,287 - 70,834,466NCBIRnor6.0
Rnor_5.01574,437,533 - 74,437,712UniSTSRnor5.0
RGSC_v3.41569,708,829 - 69,709,008UniSTSRGSC3.4
RGSC_v3.41569,928,252 - 69,928,431UniSTSRGSC3.4
Celera1563,091,098 - 63,091,277UniSTS
Celera1562,949,353 - 62,949,532UniSTS
Cytogenetic Map15q12UniSTS
BE119407  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21563,426,170 - 63,426,322 (+)MAPPERmRatBN7.2
Rnor_6.01570,816,222 - 70,816,373NCBIRnor6.0
Rnor_5.01574,419,468 - 74,419,619UniSTSRnor5.0
Celera1562,930,012 - 62,930,163UniSTS
RH 3.4 Map15385.47UniSTS
Cytogenetic Map15q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 18 of 18 rows
RefSeq Transcripts NM_001012043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC081929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 18 of 18 rows

Ensembl Acc Id: ENSRNOT00000012440   ⟹   ENSRNOP00000012440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1563,341,268 - 63,476,094 (+)Ensembl
Rnor_6.0 Ensembl1570,790,125 - 70,859,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110490   ⟹   ENSRNOP00000083043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1563,341,235 - 63,476,097 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117994   ⟹   ENSRNOP00000077267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1563,341,268 - 63,476,094 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119103   ⟹   ENSRNOP00000086500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1563,341,235 - 63,476,110 (+)Ensembl
RefSeq Acc Id: NM_001012043   ⟹   NP_001012043
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,749,830 - 69,884,657 (+)NCBI
mRatBN7.21563,341,268 - 63,476,097 (+)NCBI
Rnor_6.01570,732,164 - 70,864,855 (+)NCBI
Rnor_5.01574,335,410 - 74,468,101 (+)NCBI
RGSC_v3.41569,605,244 - 69,739,566 (+)RGD
Celera1562,845,891 - 62,979,450 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093361   ⟹   XP_038949289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,756 - 69,884,657 (+)NCBI
mRatBN7.21563,340,532 - 63,476,099 (+)NCBI
RefSeq Acc Id: XM_039093362   ⟹   XP_038949290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,755 - 69,911,605 (+)NCBI
mRatBN7.21563,340,531 - 63,497,208 (+)NCBI
RefSeq Acc Id: XM_039093365   ⟹   XP_038949293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,756 - 69,884,657 (+)NCBI
mRatBN7.21563,340,532 - 63,476,099 (+)NCBI
RefSeq Acc Id: XM_063274315   ⟹   XP_063130385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,754 - 69,878,996 (+)NCBI
RefSeq Acc Id: XR_005493732
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,757 - 69,878,995 (+)NCBI
mRatBN7.21563,340,533 - 63,470,435 (+)NCBI
RefSeq Acc Id: XR_005493733
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,757 - 69,863,237 (+)NCBI
mRatBN7.21563,340,533 - 63,454,661 (+)NCBI
RefSeq Acc Id: NP_001012043   ⟸   NM_001012043
- UniProtKB: Q66HC1 (UniProtKB/Swiss-Prot),   A0A096MIS7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012440   ⟸   ENSRNOT00000012440
RefSeq Acc Id: XP_038949290   ⟸   XM_039093362
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949289   ⟸   XM_039093361
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949293   ⟸   XM_039093365
- Peptide Label: isoform X3
Tudor   UBA

Name Modeler Protein Id AA Range Protein Structure
AF-Q66HC1-F1-model_v2 AlphaFold Q66HC1 1-651 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 38 of 38 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-12928 BioCyc
Ensembl Genes ENSRNOG00000009034 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012440.8 UniProtKB/TrEMBL
  ENSRNOT00000110490.1 UniProtKB/TrEMBL
  ENSRNOT00000117994.1 UniProtKB/Swiss-Prot
  ENSRNOT00000119103.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.770 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113366 IMAGE-MGC_LOAD
InterPro RMI1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RMI1_N_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor_TDRD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA_TDRD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:306066 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93931 IMAGE-MGC_LOAD
NCBI Gene 306066 ENTREZGENE
PANTHER SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RMI1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tdrd3 PhenoGen
PROSITE TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009034 RatGTEx
SMART DUF1767 UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MIS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6B7 ENTREZGENE, UniProtKB/TrEMBL
  Q66HC1 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 38 of 38 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Tdrd3  tudor domain containing 3  Tdrd3_predicted  tudor domain containing 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tdrd3_predicted  tudor domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED