Gsdmd (gasdermin D) - Rat Genome Database

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Gene: Gsdmd (gasdermin D) Rattus norvegicus
Analyze
Symbol: Gsdmd
Name: gasdermin D
RGD ID: 1307261
Description: Predicted to enable phospholipid binding activity; transcription coactivator activity; and wide pore channel activity. Predicted to be involved in several processes, including defense response to bacterium; positive regulation of cytokine production; and protein-containing complex assembly. Predicted to be located in several cellular components, including extracellular space; mitochondrial membrane; and nucleoplasm. Predicted to be part of NLRP3 inflammasome complex. Predicted to be active in plasma membrane. Orthologous to human GSDMD (gasdermin D); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,5-hexanedione; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: gasdermin domain containing 1; gasdermin-D; Gsdmdc1; LOC315084
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,423,209 - 109,427,771 (+)NCBIGRCr8
mRatBN7.27107,542,489 - 107,547,051 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,542,083 - 107,547,055 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,281,502 - 109,286,064 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,505,178 - 111,509,740 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,451,127 - 111,455,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,889,147 - 116,894,134 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,889,572 - 116,894,134 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,781,947 - 116,786,875 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,832,420 - 113,837,007 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,847,420 - 113,871,239 (+)NCBI
Celera7103,902,119 - 103,906,706 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GsdmdRatBrown-Vialetto-Van Laere syndrome 2  ISOGSDMD (Homo sapiens)8554872ClinVar Annotator: match by term: Brown-Vialetto-van Laere syndrome 2ClinVarPMID:20301336 more ...
GsdmdRatepidermolysis bullosa simplex with muscular dystrophy  ISOGSDMD (Homo sapiens)8554872ClinVar Annotator: match by term: Epidermolysis bullosa simplex 5B and with muscular dystrophyClinVarPMID:20301336 more ...
GsdmdRatholoprosencephaly  ISOGSDMD (Homo sapiens)8554872ClinVar Annotator: match by term: Holoprosencephaly sequenceClinVarPMID:28492532
GsdmdRatRecombinant Chromosome 8 Syndrome  ISOGSDMD (Homo sapiens)8554872ClinVar Annotator: match by term: Recombinant 8 syndromeClinVarPMID:31690835

1 to 20 of 243 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GsdmdRat(-)-epigallocatechin 3-gallate multiple interactionsISOGSDMD (Homo sapiens)6480464epigallocatechin gallate inhibits the reaction [bisphenol A results in increased expression of GSDMD mRNA] and epigallocatechin gallate inhibits the reaction [bisphenol A results in increased expression of GSDMD protein]CTDPMID:35439536
GsdmdRat(1->4)-beta-D-glucan multiple interactionsISOGsdmd (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of GSDMD mRNACTDPMID:36331819
GsdmdRat(S)-ropivacaine multiple interactionsISOGSDMD (Homo sapiens)6480464Dexmedetomidine inhibits the reaction [Ropivacaine results in increased cleavage of GSDMD protein] more ...CTDPMID:36858639
GsdmdRat(S)-ropivacaine increases cleavageISOGSDMD (Homo sapiens)6480464Ropivacaine results in increased cleavage of GSDMD proteinCTDPMID:36858639
GsdmdRat1,1-dichloroethene increases expressionISOGsdmd (Mus musculus)6480464vinylidene chloride results in increased expression of GSDMD mRNACTDPMID:26682919
GsdmdRat1,2-dimethylhydrazine multiple interactionsISOGsdmd (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of GSDMD mRNACTDPMID:22206623
GsdmdRat17beta-estradiol increases expressionISOGsdmd (Mus musculus)6480464Estradiol results in increased expression of GSDMD mRNACTDPMID:39298647
GsdmdRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of GSDMD mRNACTDPMID:21215274
GsdmdRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of GSDMD mRNACTDPMID:34747641
GsdmdRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOGsdmd (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of GSDMD mRNACTDPMID:19933214 and PMID:23994337
GsdmdRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOGsdmd (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of GSDMD mRNACTDPMID:21570461
GsdmdRat2,5-hexanedione multiple interactionsEXP 6480464Glyburide inhibits the reaction [2 and 5-hexanedione results in increased cleavage of GSDMD protein]CTDPMID:32522579 and PMID:32860822
GsdmdRat2,5-hexanedione increases cleavageEXP 64804642 and 5-hexanedione results in increased cleavage of GSDMD proteinCTDPMID:32522579 and PMID:32860822
GsdmdRat2-palmitoylglycerol increases expressionISOGSDMD (Homo sapiens)64804642-palmitoylglycerol results in increased expression of GSDMD mRNACTDPMID:37199045
GsdmdRat3,3',4,4',5-pentachlorobiphenyl increases expressionISOGsdmd (Mus musculus)64804643 more ...CTDPMID:23994337
GsdmdRat3-chloropropane-1,2-diol increases cleavageEXP 6480464alpha-Chlorohydrin results in increased cleavage of GSDMD proteinCTDPMID:33187795 and PMID:38373586
GsdmdRat3-chloropropane-1,2-diol multiple interactionsISOGsdmd (Mus musculus)6480464ginsenoside Rb1 inhibits the reaction [alpha-Chlorohydrin results in increased cleavage of GSDMD protein]CTDPMID:38373586
GsdmdRat3-chloropropane-1,2-diol multiple interactionsEXP 6480464Cyclosporine inhibits the reaction [ginsenoside Rb1 inhibits the reaction [alpha-Chlorohydrin results in increased cleavage of GSDMD protein]] and ginsenoside Rb1 inhibits the reaction [alpha-Chlorohydrin results in increased cleavage of GSDMD protein]CTDPMID:38373586
GsdmdRat3-chloropropane-1,2-diol increases cleavageISOGsdmd (Mus musculus)6480464alpha-Chlorohydrin results in increased cleavage of GSDMD proteinCTDPMID:38373586
GsdmdRat3-methyladenine multiple interactionsEXP 64804643-methyladenine promotes the reaction [Lipopolysaccharides results in increased expression of GSDMD protein]CTDPMID:37654027

1 to 20 of 243 rows

Biological Process
1 to 20 of 36 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GsdmdRatceramide biosynthetic process acts_upstream_of_or_withinISOGsdmd (Mus musculus)1624291 PMID:35705808RGDPMID:35705808
GsdmdRatdefense response to bacterium involved_inIBAMGI:1916396 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GsdmdRatdefense response to Gram-negative bacterium involved_inISOGsdmd (Mus musculus)1624291 PMID:27383986 and PMID:37988464RGDPMID:27383986 and PMID:37988464
GsdmdRatdefense response to Gram-positive bacterium involved_inISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatplasma membrane repair acts_upstream_of_or_withinISOGsdmd (Mus musculus)1624291 PMID:35705808RGDPMID:35705808
GsdmdRatpore complex assembly involved_inISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatpositive regulation of inflammatory response involved_inISOGSDMD (Homo sapiens)1624291 PMID:32109412 and PMID:33883744RGDPMID:32109412 and PMID:33883744
GsdmdRatpositive regulation of inflammatory response involved_inIEAUniProtKB:P57764 and ensembl:ENSP000002625801600115GO_REF:0000107EnsemblGO_REF:0000107
GsdmdRatpositive regulation of inflammatory response involved_inISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatpositive regulation of inflammatory response acts_upstream_of_or_withinISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatpositive regulation of interleukin-1 beta production involved_inISOGsdmd (Mus musculus)1624291 PMID:26611636 more ...RGDPMID:26611636 more ...
GsdmdRatpositive regulation of interleukin-1 production involved_inISOGSDMD (Homo sapiens) and UniProtKB:P57764-PRO_00004375261624291 PMID:33883744RGDPMID:33883744
GsdmdRatpositive regulation of interleukin-18 production involved_inISOGSDMD (Homo sapiens) and UniProtKB:P57764-PRO_00004375261624291 PMID:33883744RGDPMID:33883744
GsdmdRatprogrammed cell death involved_inIEAUniProtKB-KW:KW-12101600115GO_REF:0000043UniProtGO_REF:0000043
GsdmdRatprotein homooligomerization involved_inISOGSDMD (Homo sapiens) and UniProtKB:P57764-PRO_00004375261624291 PMID:33883744 and PMID:38040708RGDPMID:33883744 and PMID:38040708
GsdmdRatprotein homooligomerization involved_inISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatprotein maturation acts_upstream_of_or_withinISOGsdmd (Mus musculus)1624291 PMID:35705808RGDPMID:35705808
GsdmdRatprotein secretion involved_inISOGsdmd (Mus musculus)1624291 PMID:35705808RGDPMID:35705808
GsdmdRatprotein secretion involved_inIEAUniProtKB:P57764 and ensembl:ENSP000002625801600115GO_REF:0000107EnsemblGO_REF:0000107
GsdmdRatprotein secretion involved_inISOGSDMD (Homo sapiens)1624291 PMID:33883744 more ...RGDPMID:33883744 more ...
1 to 20 of 36 rows

Cellular Component
1 to 20 of 21 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GsdmdRatcytosol located_inIEAUniProtKB-SubCell:SL-00911600115GO_REF:0000044UniProtGO_REF:0000044
GsdmdRatcytosol located_inISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatextracellular space located_inISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatmembrane is_active_inISOGSDMD (Homo sapiens)1624291 PMID:32109412 and PMID:33883744RGDPMID:32109412 and PMID:33883744
GsdmdRatmembrane is_active_inIEAUniProtKB:P57764 and ensembl:ENSP000002625801600115GO_REF:0000107EnsemblGO_REF:0000107
GsdmdRatmitochondrial membrane located_inISOGsdmd (Mus musculus)1624291 PMID:37001519RGDPMID:37001519
GsdmdRatNLRP3 inflammasome complex part_ofISOGsdmd (Mus musculus)1624291 PMID:26611636RGDPMID:26611636
GsdmdRatNLRP3 inflammasome complex part_ofIBAMGI:1916396 and PANTHER:PTN0004191631600115GO_REF:0000033GO_CentralGO_REF:0000033
GsdmdRatnucleoplasm located_inISOGSDMD (Homo sapiens)1624291 RGDGO_REF:0000052
GsdmdRatnucleoplasm located_inIEAUniProtKB:P57764 and ensembl:ENSP000002625801600115GO_REF:0000107EnsemblGO_REF:0000107
GsdmdRatplasma membrane located_inISOGsdmd (Mus musculus) and UniProtKB:Q9D8T2-PRO_00004375281624291 PMID:27339137RGDPMID:27339137
GsdmdRatplasma membrane is_active_inIEAUniProtKB:P57764 and ensembl:ENSP000002625801600115GO_REF:0000107EnsemblGO_REF:0000107
GsdmdRatplasma membrane is_active_inISOGsdmd (Mus musculus)1624291 PMID:27339137 more ...RGDPMID:27339137 more ...
GsdmdRatplasma membrane located_inISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
GsdmdRatplasma membrane is_active_inISOGSDMD (Homo sapiens)1624291 PMID:32109412 and PMID:33883744RGDPMID:32109412 and PMID:33883744
GsdmdRatplasma membrane is_active_inISOGsdmd (Mus musculus) and UniProtKB:Q9D8T2-PRO_00004375281624291 PMID:38538834RGDPMID:38538834
GsdmdRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
GsdmdRatplasma membrane is_active_inISOGSDMD (Homo sapiens) and UniProtKB:P57764-PRO_00004375261624291 PMID:36227980RGDPMID:36227980
GsdmdRatplasma membrane located_inISOGSDMD (Homo sapiens) and UniProtKB:P57764-PRO_00004375261624291 PMID:33883744RGDPMID:33883744
1 to 20 of 21 rows

Molecular Function
1 to 20 of 23 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GsdmdRatcardiolipin binding enablesISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatphosphatidic acid binding enablesISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatphosphatidylinositol-4,5-bisphosphate binding enablesISOGSDMD (Homo sapiens) and UniProtKB:P57764-PRO_00004375261624291 PMID:27281216 and PMID:36227980RGDPMID:27281216 and PMID:36227980
GsdmdRatphosphatidylinositol-4,5-bisphosphate binding enablesISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatphosphatidylinositol-4,5-bisphosphate binding enablesIBAMGI:1916396 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GsdmdRatphosphatidylinositol-4,5-bisphosphate binding enablesIEAUniProtKB:P57764 and ensembl:ENSP000002625801600115GO_REF:0000107EnsemblGO_REF:0000107
GsdmdRatphosphatidylinositol-4-phosphate binding enablesISOGSDMD (Homo sapiens) and UniProtKB:P57764-PRO_00004375261624291 PMID:36227980RGDPMID:36227980
GsdmdRatphosphatidylinositol-4-phosphate binding enablesIEAUniProtKB:P57764 and ensembl:ENSP000002625801600115GO_REF:0000107EnsemblGO_REF:0000107
GsdmdRatphosphatidylinositol-4-phosphate binding enablesIBAMGI:1916396 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GsdmdRatphosphatidylinositol-4-phosphate binding enablesISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatphosphatidylserine binding enablesISOGsdmd (Mus musculus)1624291 PMID:27383986RGDPMID:27383986
GsdmdRatphosphatidylserine binding enablesIBAMGI:1916396 and PANTHER:PTN0004191321600115GO_REF:0000033GO_CentralGO_REF:0000033
GsdmdRatprotein binding enablesISOGSDMD (Homo sapiens)1624291UniProtKB:P0DTC9 more ...RGDPMID:25416956 more ...
GsdmdRattranscription coactivator activity enablesISOGsdmd (Mus musculus) and UniProtKB:Q9D8T2-PRO_00004590191624291 PMID:37327784RGDPMID:37327784
GsdmdRatwide pore channel activity enablesISOGSDMD (Homo sapiens) and UniProtKB:P57764-PRO_00004590181624291 PMID:35794369RGDPMID:35794369
GsdmdRatwide pore channel activity enablesIEAUniProtKB:P57764 and ensembl:ENSP000002625801600115GO_REF:0000107EnsemblGO_REF:0000107
GsdmdRatwide pore channel activity enablesISOGsdmd (Mus musculus) and UniProtKB:Q9D8T2-PRO_00004590201624291 PMID:35749514 and PMID:35794369RGDPMID:35749514 and PMID:35794369
GsdmdRatwide pore channel activity enablesISOGsdmd (Mus musculus)1624291 PMID:27383986 more ...RGDPMID:27383986 more ...
GsdmdRatwide pore channel activity enablesISOGsdmd (Mus musculus) and UniProtKB:Q9D8T2-PRO_00004375281624291 PMID:27339137 and PMID:38632402RGDPMID:27339137 and PMID:38632402
GsdmdRatwide pore channel activity enablesISOGSDMD (Homo sapiens)1624291 PMID:32109412RGDPMID:32109412
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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10322635   PMID:26611636   PMID:27383986   PMID:30161099   PMID:30600840   PMID:34920032   PMID:35775127   PMID:36040608   PMID:36224321   PMID:36988259   PMID:37549514   PMID:37578618  



Gsdmd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,423,209 - 109,427,771 (+)NCBIGRCr8
mRatBN7.27107,542,489 - 107,547,051 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,542,083 - 107,547,055 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,281,502 - 109,286,064 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,505,178 - 111,509,740 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,451,127 - 111,455,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,889,147 - 116,894,134 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,889,572 - 116,894,134 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,781,947 - 116,786,875 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,832,420 - 113,837,007 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,847,420 - 113,871,239 (+)NCBI
Celera7103,902,119 - 103,906,706 (+)NCBICelera
Cytogenetic Map7q34NCBI
GSDMD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,553,387 - 143,563,062 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,553,207 - 143,563,062 (+)EnsemblGRCh38hg38GRCh38
GRCh378144,635,557 - 144,645,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,711,635 - 144,716,375 (+)NCBINCBI36Build 36hg18NCBI36
Build 348144,712,102 - 144,716,372NCBI
Celera8140,945,843 - 140,955,486 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,886,817 - 139,896,607 (+)NCBIHuRef
CHM1_18144,675,788 - 144,685,442 (+)NCBICHM1_1
T2T-CHM13v2.08144,702,722 - 144,712,453 (+)NCBIT2T-CHM13v2.0
Gsdmd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,733,990 - 75,739,257 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,734,176 - 75,739,257 (+)EnsemblGRCm39 Ensembl
GRCm381575,862,144 - 75,867,408 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,862,327 - 75,867,408 (+)EnsemblGRCm38mm10GRCm38
MGSCv371575,692,769 - 75,697,834 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,689,594 - 75,694,659 (+)NCBIMGSCv36mm8
Celera1577,363,199 - 77,368,383 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.0NCBI
Gsdmd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,265,753 - 2,271,655 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,265,759 - 2,270,569 (+)NCBIChiLan1.0ChiLan1.0
GSDMD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,039,881 - 161,046,166 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,557,568 - 136,563,849 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,311,042 - 140,316,084 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,321,800 - 143,331,455 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,326,319 - 143,331,455 (+)Ensemblpanpan1.1panPan2
GSDMD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,221,219 - 37,226,912 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,193,022 - 37,228,360 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,178,091 - 37,183,803 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,693,423 - 37,699,140 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,693,447 - 37,700,588 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,367,765 - 37,373,478 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,484,726 - 37,490,434 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,965,884 - 37,971,607 (+)NCBIUU_Cfam_GSD_1.0
Gsdmd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,141,008 - 1,145,358 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364708,567,091 - 8,571,467 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364708,567,085 - 8,571,448 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSDMD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4995,763 - 1,000,271 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14995,753 - 1,001,964 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.241,054,277 - 1,057,736 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSDMD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,778,290 - 137,783,542 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660392,110,335 - 2,115,465 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gsdmd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,187,687 - 13,192,736 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,187,810 - 13,192,843 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Gsdmd
12 total Variants

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:35
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000045475
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat

1 to 10 of 35 rows
RH133888  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map7781.4UniSTS
Cytogenetic Map7q34UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000075917   ⟹   ENSRNOP00000067951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,542,418 - 107,547,051 (+)Ensembl
Rnor_6.0 Ensembl7116,889,572 - 116,894,134 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095149   ⟹   ENSRNOP00000095279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,542,083 - 107,547,055 (+)Ensembl
RefSeq Acc Id: NM_001400993   ⟹   NP_001387922
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,423,209 - 109,427,771 (+)NCBI
mRatBN7.27107,542,489 - 107,547,051 (+)NCBI
RefSeq Acc Id: NM_001400994   ⟹   NP_001387923
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,423,209 - 109,427,771 (+)NCBI
mRatBN7.27107,542,489 - 107,547,051 (+)NCBI
Protein RefSeqs NP_001387922 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387923 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16048 (Get FASTA)   NCBI Sequence Viewer  
  EDM16049 (Get FASTA)   NCBI Sequence Viewer  
  EDM16050 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067951
  ENSRNOP00000067951.1
  ENSRNOP00000095279.1
Ensembl Acc Id: ENSRNOP00000067951   ⟸   ENSRNOT00000075917
Ensembl Acc Id: ENSRNOP00000095279   ⟸   ENSRNOT00000095149
RefSeq Acc Id: NP_001387922   ⟸   NM_001400993
- UniProtKB: A0A096MJ11 (UniProtKB/TrEMBL),   A6HS22 (UniProtKB/TrEMBL),   A6HS23 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387923   ⟸   NM_001400994
- UniProtKB: A0A096MJ11 (UniProtKB/TrEMBL),   A6HS22 (UniProtKB/TrEMBL),   A6HS23 (UniProtKB/TrEMBL)
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJ11-F1-model_v2 AlphaFold A0A096MJ11 1-488 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695391
Promoter ID:EPDNEW_R5916
Type:initiation region
Name:Gsdmd_1
Description:gasdermin D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07116,889,589 - 116,889,649EPDNEW


1 to 19 of 19 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-32979 BioCyc
Ensembl Genes ENSRNOG00000007728 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075917 ENTREZGENE
  ENSRNOT00000075917.2 UniProtKB/TrEMBL
  ENSRNOT00000095149.1 UniProtKB/TrEMBL
InterPro Gasdermin UniProtKB/TrEMBL
  Gasdermin_pore UniProtKB/TrEMBL
  Gasdermin_PUB UniProtKB/TrEMBL
NCBI Gene 315084 ENTREZGENE
PANTHER DFNA5 UniProtKB/TrEMBL
  GASDERMIN-D UniProtKB/TrEMBL
Pfam Gasdermin UniProtKB/TrEMBL
  Gasdermin_C UniProtKB/TrEMBL
PhenoGen Gsdmd PhenoGen
RatGTEx ENSRNOG00000007728 RatGTEx
UniProt A0A096MJ11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B2B6_RAT UniProtKB/TrEMBL
  A6HS22 ENTREZGENE, UniProtKB/TrEMBL
  A6HS23 ENTREZGENE, UniProtKB/TrEMBL
1 to 19 of 19 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Gsdmd  gasdermin D  Gsdmdc1_predicted  gasdermin domain containing 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Gsdmdc1_predicted  gasdermin domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED