Mdn1 (midasin AAA ATPase 1) - Rat Genome Database

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Gene: Mdn1 (midasin AAA ATPase 1) Rattus norvegicus
Analyze
Symbol: Mdn1
Name: midasin AAA ATPase 1
RGD ID: 1306394
Description: Predicted to enable ATP binding activity and ATP hydrolysis activity. Predicted to be located in cytosol; intermediate filament cytoskeleton; and nuclear lumen. Orthologous to human MDN1 (midasin AAA ATPase 1); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362498; midasin; midasin homolog; midasin homolog (yeast)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8551,851,785 - 51,982,688 (+)NCBIGRCr8
mRatBN7.2547,055,435 - 47,190,426 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl547,055,447 - 47,186,332 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0547,894,526 - 48,036,071 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl547,894,530 - 48,036,287 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0552,580,905 - 52,587,850 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0552,590,296 - 52,623,707 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0552,492,571 - 52,571,478 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4548,961,431 - 49,082,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1549,080,852 - 49,082,698 (+)NCBI
Celera545,816,599 - 45,945,591 (+)NCBICelera
Cytogenetic Map5q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-alpha-phellandrene  (ISO)
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
hexadecanoic acid  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pirinixic acid  (ISO)
progesterone  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The power of AAA-ATPases on the road of pre-60S ribosome maturation--molecular machines that strip pre-ribosomal particles. Kressler D, etal., Biochim Biophys Acta. 2012 Jan;1823(1):92-100. doi: 10.1016/j.bbamcr.2011.06.017. Epub 2011 Jul 5.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19946888  


Genomics

Comparative Map Data
Mdn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8551,851,785 - 51,982,688 (+)NCBIGRCr8
mRatBN7.2547,055,435 - 47,190,426 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl547,055,447 - 47,186,332 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0547,894,526 - 48,036,071 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl547,894,530 - 48,036,287 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0552,580,905 - 52,587,850 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0552,590,296 - 52,623,707 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0552,492,571 - 52,571,478 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4548,961,431 - 49,082,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1549,080,852 - 49,082,698 (+)NCBI
Celera545,816,599 - 45,945,591 (+)NCBICelera
Cytogenetic Map5q21NCBI
MDN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38689,642,498 - 89,819,794 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl689,642,498 - 89,819,794 (-)EnsemblGRCh38hg38GRCh38
GRCh37690,352,217 - 90,529,513 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36690,409,952 - 90,586,163 (-)NCBINCBI36Build 36hg18NCBI36
Build 34690,409,951 - 90,586,163NCBI
Celera690,772,202 - 90,948,387 (-)NCBICelera
Cytogenetic Map6q15NCBI
HuRef687,570,174 - 87,746,815 (-)NCBIHuRef
CHM1_1690,450,824 - 90,627,010 (-)NCBICHM1_1
T2T-CHM13v2.0690,851,868 - 91,029,153 (-)NCBIT2T-CHM13v2.0
Mdn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39432,656,867 - 32,775,217 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl432,657,119 - 32,775,217 (+)EnsemblGRCm39 Ensembl
GRCm38432,657,114 - 32,775,217 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl432,657,119 - 32,775,217 (+)EnsemblGRCm38mm10GRCm38
MGSCv37432,744,094 - 32,862,192 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36432,985,730 - 33,103,830 (+)NCBIMGSCv36mm8
Celera432,404,426 - 32,522,293 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map414.3NCBI
Mdn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541116,366,463 - 16,508,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541116,365,150 - 16,508,752 (-)NCBIChiLan1.0ChiLan1.0
MDN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25109,723,291 - 109,912,589 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16107,624,140 - 107,803,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0687,518,421 - 87,697,896 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1690,791,831 - 90,969,514 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl690,791,831 - 90,969,514 (-)Ensemblpanpan1.1panPan2
MDN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11248,855,159 - 49,020,796 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1248,855,604 - 49,020,627 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1248,660,995 - 48,827,798 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01249,663,080 - 49,830,104 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1249,664,342 - 49,829,958 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11248,978,340 - 49,145,220 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01248,879,864 - 49,046,010 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01249,071,916 - 49,238,345 (-)NCBIUU_Cfam_GSD_1.0
Mdn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494683,868,409 - 84,012,318 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365102,458,721 - 2,601,410 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365102,458,541 - 2,602,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl157,660,224 - 57,826,350 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1157,660,222 - 57,826,362 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2164,590,202 - 64,776,089 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11314,403,372 - 14,578,351 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040190,720,666 - 190,964,646 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247994,364,684 - 4,523,022 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247994,364,462 - 4,524,388 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mdn1
445 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:13
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000075501
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat

Markers in Region
AW557250  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2547,185,744 - 47,185,895 (+)MAPPERmRatBN7.2
Rnor_6.0548,035,467 - 48,035,617NCBIRnor6.0
Rnor_5.0552,623,112 - 52,623,262UniSTSRnor5.0
RGSC_v3.4549,081,927 - 49,082,077UniSTSRGSC3.4
Celera545,944,987 - 45,945,137UniSTS
Cytogenetic Map5q21UniSTS
AA958993  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2547,186,074 - 47,186,263 (+)MAPPERmRatBN7.2
Rnor_6.0548,035,797 - 48,035,985NCBIRnor6.0
Rnor_5.0552,623,442 - 52,623,630UniSTSRnor5.0
RGSC_v3.4549,082,257 - 49,082,445UniSTSRGSC3.4
Celera545,945,317 - 45,945,505UniSTS
Cytogenetic Map5q21UniSTS
RH137098  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2547,186,020 - 47,186,219 (+)MAPPERmRatBN7.2
Rnor_6.0548,035,743 - 48,035,941NCBIRnor6.0
Rnor_5.0552,623,388 - 52,623,586UniSTSRnor5.0
RGSC_v3.4549,082,203 - 49,082,401UniSTSRGSC3.4
Celera545,945,263 - 45,945,461UniSTS
RH 3.4 Map5252.3UniSTS
Cytogenetic Map5q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 22 6 17 6 1 1 63 18 37 8 1
Low 3 37 35 35 2 35 7 10 11 17 4 3 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000067610   ⟹   ENSRNOP00000061095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl548,011,864 - 48,013,530 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000075869   ⟹   ENSRNOP00000068023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl547,908,806 - 47,972,286 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076035   ⟹   ENSRNOP00000068339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl547,894,530 - 47,907,340 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076388   ⟹   ENSRNOP00000068124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl548,006,823 - 48,012,067 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077040   ⟹   ENSRNOP00000067967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl548,012,231 - 48,036,287 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090799   ⟹   ENSRNOP00000075047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl547,055,447 - 47,186,332 (+)Ensembl
Rnor_6.0 Ensembl547,894,663 - 48,008,969 (+)Ensembl
RefSeq Acc Id: NM_001427015   ⟹   NP_001413944
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8551,851,809 - 51,982,688 (+)NCBI
RefSeq Acc Id: XM_039110965   ⟹   XP_038966893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8551,851,786 - 51,982,687 (+)NCBI
mRatBN7.2547,055,435 - 47,190,426 (+)NCBI
RefSeq Acc Id: XM_063287901   ⟹   XP_063143971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8551,851,785 - 51,958,034 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001413944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966893 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143971 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86440 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075047.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000067967   ⟸   ENSRNOT00000077040
RefSeq Acc Id: ENSRNOP00000061095   ⟸   ENSRNOT00000067610
RefSeq Acc Id: ENSRNOP00000068023   ⟸   ENSRNOT00000075869
RefSeq Acc Id: ENSRNOP00000075047   ⟸   ENSRNOT00000090799
RefSeq Acc Id: ENSRNOP00000068124   ⟸   ENSRNOT00000076388
RefSeq Acc Id: ENSRNOP00000068339   ⟸   ENSRNOT00000076035
RefSeq Acc Id: XP_038966893   ⟸   XM_039110965
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063143971   ⟸   XM_063287901
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001413944   ⟸   NM_001427015
- UniProtKB: A0A0G2K9L9 (UniProtKB/TrEMBL)
Protein Domains
VWFA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306394 AgrOrtholog
BioCyc Gene G2FUF-41716 BioCyc
Ensembl Genes ENSRNOG00000047513 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000090799.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7303458 IMAGE-MGC_LOAD
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_7 UniProtKB/TrEMBL
  ATPase_dyneun-rel_AAA UniProtKB/TrEMBL
  KRBA1_rpt UniProtKB/TrEMBL
  MDN1_AAA_lid_4 UniProtKB/TrEMBL
  Midasin UniProtKB/TrEMBL
  Midasin_AAA_lid_5 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
MGC_CLONE MGC:105991 IMAGE-MGC_LOAD
NCBI Gene 362498 ENTREZGENE
PANTHER MIDASIN UniProtKB/TrEMBL
  MIDASIN-RELATED UniProtKB/TrEMBL
Pfam AAA_5 UniProtKB/TrEMBL
  AAA_lid_5 UniProtKB/TrEMBL
  AAA_lid_7 UniProtKB/TrEMBL
  MDN1_4th UniProtKB/TrEMBL
PhenoGen Mdn1 PhenoGen
PIRSF Midasin UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047513 RatGTEx
SMART AAA UniProtKB/TrEMBL
  KRBA1 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A0G2K9L9 ENTREZGENE, UniProtKB/TrEMBL
  Q5RJZ0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-05 Mdn1  midasin AAA ATPase 1  Mdn1  midasin homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Mdn1  midasin homolog (yeast)  Mdn1_predicted  midasin homolog (yeast) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mdn1_predicted  midasin homolog (yeast) (predicted)      Symbol and Name status set to approved 70820 APPROVED