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Gene: Rbm42 (RNA binding motif protein 42) Rattus norvegicus

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Symbol:

Rbm42

Name:

RNA binding motif protein 42

RGD ID:

1306184

Description:

Predicted to enable mRNA binding activity. Predicted to act upstream of or within negative regulation of mRNA splicing, via spliceosome. Predicted to be located in cytoplasm. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Orthologous to human RBM42 (RNA binding motif protein 42); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361545; RGD1306184; RNA-binding motif protein 42; RNA-binding protein 42; similar to RIKEN cDNA 3100004P22

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM42 (RNA binding motif protein 42)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rbm42 (RNA binding motif protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm42 (RNA binding motif protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM42 (RNA binding motif protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM42 (RNA binding motif protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm42 (RNA binding motif protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM42 (RNA binding motif protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM42 (RNA binding motif protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm42 (RNA binding motif protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rbm42 (RNA binding motif protein 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RBM42 (RNA binding motif protein 42)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbm42 (RNA binding motif protein 42)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG2931	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rbm-42	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbm42	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	95,026,050 - 95,036,020 (-)	NCBI		GRCr8
mRatBN7.2	1	85,898,618 - 85,908,569 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,898,625 - 85,908,573 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	91,314,846 - 91,324,699 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,781,017 - 99,790,871 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	93,073,133 - 93,082,985 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	89,099,296 - 89,109,248 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,099,277 - 89,109,230 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,254,914 - 90,264,857 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,692,754 - 85,702,684 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	85,770,869 - 85,780,753 (-)	NCBI
Celera	1	80,270,333 - 80,280,263 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm42	Rat	Brugada syndrome 5		ISO	RGD:1601847	8554872	ClinVar Annotator: match by term: Brugada syndrome 5	ClinVar	PMID:28492532
Rbm42	Rat	dystonia		ISO	RGD:1601847	8554872	ClinVar Annotator: match by term: Dystonic disorder	ClinVar	PMID:32581362
Rbm42	Rat	hereditary spastic paraplegia 75		ISO	RGD:1601847	8554872	ClinVar Annotator: match by term: Hereditary spastic paraplegia 75	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm42	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1314659	6480464	Tetrachlorodibenzodioxin affects the expression of RBM42 mRNA	CTD	PMID:21570461
Rbm42	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of RBM42 mRNA	CTD	PMID:33387578\|PMID:34747641
Rbm42	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	RGD:1314659	6480464	bisphenol S results in increased expression of RBM42 mRNA	CTD	PMID:39298647
Rbm42	Rat	acrolein	multiple interactions	ISO	RGD:1601847	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of more ...	CTD	PMID:32699268
Rbm42	Rat	alpha-pinene	multiple interactions	ISO	RGD:1601847	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of more ...	CTD	PMID:32699268
Rbm42	Rat	antirheumatic drug	increases expression	ISO	RGD:1601847	6480464	Antirheumatic Agents results in increased expression of RBM42 mRNA	CTD	PMID:24449571
Rbm42	Rat	aristolochic acid A	increases expression	ISO	RGD:1601847	6480464	aristolochic acid I results in increased expression of RBM42 mRNA	CTD	PMID:33212167
Rbm42	Rat	arsane	affects methylation	ISO	RGD:1601847	6480464	Arsenic affects the methylation of RBM42 gene	CTD	PMID:25304211
Rbm42	Rat	arsenic atom	affects methylation	ISO	RGD:1601847	6480464	Arsenic affects the methylation of RBM42 gene	CTD	PMID:25304211
Rbm42	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1314659	6480464	Benzo(a)pyrene results in increased expression of RBM42 mRNA	CTD	PMID:22228805
Rbm42	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	RGD:1601847	6480464	7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide results in decreased expression of RBM42 mRNA	CTD	PMID:20018196
Rbm42	Rat	beta-lapachone	increases expression	ISO	RGD:1601847	6480464	beta-lapachone results in increased expression of RBM42 mRNA	CTD	PMID:38218311
Rbm42	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RBM42 mRNA	CTD	PMID:25181051
Rbm42	Rat	bisphenol A	increases expression	ISO	RGD:1314659	6480464	bisphenol A results in increased expression of RBM42 mRNA	CTD	PMID:33221593
Rbm42	Rat	bisphenol A	multiple interactions	ISO	RGD:1601847	6480464	[[ginger extract results in increased abundance of Oils, Volatile] which co-treated with bisphenol A] affects more ...	CTD	PMID:33376534
Rbm42	Rat	C60 fullerene	decreases expression	EXP		6480464	fullerene C60 results in decreased expression of RBM42 mRNA	CTD	PMID:19167457
Rbm42	Rat	cadmium dichloride	increases expression	ISO	RGD:1601847	6480464	Cadmium Chloride results in increased expression of RBM42 mRNA	CTD	PMID:38568856
Rbm42	Rat	cocaine	affects expression	EXP		6480464	Cocaine affects the expression of RBM42 mRNA	CTD	PMID:20187946
Rbm42	Rat	copper(II) sulfate	increases expression	ISO	RGD:1601847	6480464	Copper Sulfate results in increased expression of RBM42 mRNA	CTD	PMID:19549813
Rbm42	Rat	elemental selenium	increases expression	ISO	RGD:1601847	6480464	Selenium results in increased expression of RBM42 mRNA	CTD	PMID:19244175
Rbm42	Rat	finasteride	increases expression	EXP		6480464	Finasteride results in increased expression of RBM42 mRNA	CTD	PMID:24136188
Rbm42	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of RBM42 mRNA	CTD	PMID:24136188
Rbm42	Rat	folic acid	increases expression	ISO	RGD:1314659	6480464	Folic Acid results in increased expression of RBM42 mRNA	CTD	PMID:25629700
Rbm42	Rat	hydrogen peroxide	affects expression	ISO	RGD:1601847	6480464	Hydrogen Peroxide affects the expression of RBM42 mRNA	CTD	PMID:21179406
Rbm42	Rat	ivermectin	decreases expression	ISO	RGD:1601847	6480464	Ivermectin results in decreased expression of RBM42 protein	CTD	PMID:32959892
Rbm42	Rat	lead(0)	decreases expression	ISO	RGD:1601847	6480464	Lead results in decreased expression of RBM42 mRNA	CTD	PMID:19921347
Rbm42	Rat	ozone	multiple interactions	ISO	RGD:1601847	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of more ...	CTD	PMID:32699268
Rbm42	Rat	selenium atom	increases expression	ISO	RGD:1601847	6480464	Selenium results in increased expression of RBM42 mRNA	CTD	PMID:19244175
Rbm42	Rat	sodium arsenite	increases expression	ISO	RGD:1601847	6480464	sodium arsenite results in increased expression of RBM42 mRNA	CTD	PMID:38568856
Rbm42	Rat	sulindac	decreases expression	EXP		6480464	Sulindac results in decreased expression of RBM42 mRNA	CTD	PMID:24136188
Rbm42	Rat	tetrachloroethene	decreases expression	ISO	RGD:1314659	6480464	Tetrachloroethylene results in decreased expression of RBM42 mRNA	CTD	PMID:28973375
Rbm42	Rat	tetrachloromethane	increases expression	ISO	RGD:1314659	6480464	Carbon Tetrachloride results in increased expression of RBM42 mRNA	CTD	PMID:31919559
Rbm42	Rat	thiram	increases expression	ISO	RGD:1601847	6480464	Thiram results in increased expression of RBM42 mRNA	CTD	PMID:38568856
Rbm42	Rat	titanium dioxide	increases methylation	ISO	RGD:1314659	6480464	titanium dioxide results in increased methylation of RBM42 gene	CTD	PMID:35295148
Rbm42	Rat	titanium dioxide	decreases methylation	ISO	RGD:1314659	6480464	titanium dioxide results in decreased methylation of RBM42 gene	CTD	PMID:35295148
Rbm42	Rat	triphenyl phosphate	affects expression	ISO	RGD:1601847	6480464	triphenyl phosphate affects the expression of RBM42 mRNA	CTD	PMID:37042841
Rbm42	Rat	valproic acid	increases methylation	ISO	RGD:1601847	6480464	Valproic Acid results in increased methylation of RBM42 gene	CTD	PMID:29154799
Rbm42	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of RBM42 mRNA	CTD	PMID:23034163
Rbm42	Rat	vitamin E	increases expression	ISO	RGD:1601847	6480464	Vitamin E results in increased expression of RBM42 mRNA	CTD	PMID:19244175

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm42	Rat	negative regulation of mRNA splicing, via spliceosome	acts_upstream_of_or_within	IEA	UniProtKB:Q91V81\|ensembl:ENSMUSP00000040005	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbm42	Rat	negative regulation of mRNA splicing, via spliceosome	acts_upstream_of_or_within	ISO	RGD:1314659	1624291	PMID:23636947	RGD	PMID:23636947

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm42	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Rbm42	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rbm42	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rbm42	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Rbm42	Rat	U4/U6 x U5 tri-snRNP complex	part_of	ISO	RGD:1601847	1624291	PMID:30975767	RGD	PMID:30975767
Rbm42	Rat	U4/U6 x U5 tri-snRNP complex	part_of	IEA	UniProtKB:Q9BTD8\|ensembl:ENSP00000262633	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm42	Rat	mRNA binding	enables	IEA	InterPro:IPR050825	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rbm42	Rat	mRNA binding	enables	IBA	PANTHER:PTN002935362\|SGD:S000001128\|SGD:S000004961\|TAIR:locus:2012211\|TAIR:locus:2014340\|TAIR:locus:2015398\|TAIR:locus:2015403\|TAIR:locus:2018794\|TAIR:locus:2027372\|TAIR:locus:2087457\|TAIR:locus:2094098\|TAIR:locus:2116322\|TAIR:locus:2150215\|TAIR:locus:2160210\|UniProtKB:Q0J9Y2\|UniProtKB:Q5ARJ0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Rbm42	Rat	nucleic acid binding	enables	IEA	InterPro:IPR035979	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rbm42	Rat	protein binding	enables	ISO	RGD:1601847	1624291	UniProtKB:P25788\|UniProtKB:P61978\|UniProtKB:P86480\|UniProtKB:Q6ZRY4 PMID:16189514, PMID:22365833, PMID:25416956, PMID:29892012, PMID:32296183, PMID:35271311	RGD	PMID:16189514\|PMID:22365833\|PMID:25416956\|PMID:29892012\|PMID:32296183\|PMID:35271311
Rbm42	Rat	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rbm42	Rat	RNA binding	enables	IEA	InterPro:IPR000504	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rbm42	Rat	RNA binding	enables	IEA	UniRule:UR000414619	1600115	GO_REF:0000104	UniProt	GO_REF:0000104

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:8889548	PMID:22658674	PMID:23636947

Rbm42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	95,026,050 - 95,036,020 (-)	NCBI		GRCr8
mRatBN7.2	1	85,898,618 - 85,908,569 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,898,625 - 85,908,573 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	91,314,846 - 91,324,699 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,781,017 - 99,790,871 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	93,073,133 - 93,082,985 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	89,099,296 - 89,109,248 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,099,277 - 89,109,230 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,254,914 - 90,264,857 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,692,754 - 85,702,684 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	85,770,869 - 85,780,753 (-)	NCBI
Celera	1	80,270,333 - 80,280,263 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

RBM42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	35,629,036 - 35,637,685 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	35,629,030 - 35,637,686 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	36,119,938 - 36,128,587 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	40,811,820 - 40,820,427 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	32,833,444 - 32,842,052 (+)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	32,625,223 - 32,633,832 (+)	NCBI		HuRef
CHM1_1	19	36,121,512 - 36,130,119 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,173,991 - 38,182,639 (+)	NCBI		T2T-CHM13v2.0

Rbm42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	30,340,420 - 30,349,653 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	30,340,424 - 30,349,742 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,640,995 - 30,650,228 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,640,999 - 30,650,317 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	31,426,014 - 31,435,247 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	30,349,761 - 30,358,925 (-)	NCBI		MGSCv36	mm8
Celera	7	25,232,827 - 25,242,063 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	18.95	NCBI

Rbm42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	4,844,747 - 4,854,504 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	4,844,780 - 4,854,261 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBM42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	41,625,564 - 41,634,271 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	43,609,051 - 43,617,721 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	32,559,215 - 32,567,899 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,295,079 - 41,303,817 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,294,818 - 41,303,817 (+)	Ensembl	panpan1.1		panPan2

RBM42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,971,365 - 116,985,796 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,065 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,581,376 - 117,589,098 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,581,172 - 117,589,073 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	117,144,359 - 117,152,078 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,987 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,897 (-)	NCBI		UU_Cfam_GSD_1.0

Rbm42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	10,960,493 - 10,969,107 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	676,537 - 685,419 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	676,775 - 685,415 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	45,074,540 - 45,083,239 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	45,074,527 - 45,083,124 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,531,490 - 40,540,418 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	30,539,718 - 30,548,412 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	30,539,721 - 30,548,414 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	8,335,012 - 8,343,699 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	7,991,462 - 8,000,804 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	7,991,685 - 8,000,314 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rbm42
84 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	27
Interacting mature miRNAs:	29
Transcripts:	ENSRNOT00000031254
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	85424647	100358001	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	72197680	90508767	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	82174743	118944897	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	83547917	128547917	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	78430754	91209302	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001014159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI273871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP504208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031254 ⟹ ENSRNOP00000029729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	85,898,625 - 85,908,573 (-)	Ensembl
Rnor_6.0 Ensembl	1	89,099,296 - 89,109,226 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087437 ⟹ ENSRNOP00000070333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	85,898,629 - 85,908,542 (-)	Ensembl
Rnor_6.0 Ensembl	1	89,099,277 - 89,109,230 (-)	Ensembl

RefSeq Acc Id:

NM_001014159 ⟹ NP_001014181

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	95,026,050 - 95,035,980 (-)	NCBI
mRatBN7.2	1	85,898,618 - 85,908,551 (-)	NCBI
Rnor_6.0	1	89,099,296 - 89,109,226 (-)	NCBI
Rnor_5.0	1	90,254,914 - 90,264,857 (-)	NCBI
RGSC_v3.4	1	85,692,754 - 85,702,684 (-)	RGD
Celera	1	80,270,333 - 80,280,263 (-)	RGD

Sequence:

show sequence

CGGTAATCCACACGTCATCGGCCGGCTCCCACCCTGAGGGGACAGGGACTCGACCGTAGAACCCGCGGCTGCGGCTGAAAAGAGCGGCGAAGGCCATGGCATCAGCGATGGCCGGAGCGGGACCAGCT
CCGGGACTCCCGGTGGCGGGAGGGCCCGTGGTCCCGGGGCCTGGTGTCGGCATCCCGGGCAAGAGCGGCGAAGAACGCTTGAAAGAAATGGAGGCGGAGATGGCCCTGTTTGAGCAAGAAGTACTGGG
AGCTCCGGTGACCGGAATCCCAACTGCTGTGCCTGCGGTGCCCACAGTGGAGGCGATGCAGGTTCCCCCAGCACCTGTGATCCGCCCAATTATCGCCACCAACACATATCAACAGGTCCAACAGACCC
TGGAGGCCCGGGCAGCTGCTGCAGCCACAGTAGTTCCTCCCATGGTGGGAGGCCCTCCTTTTGTGGGCCCAGTTGGCTTTGGCCCTGCTGATCGAAGTCACCTGGACAGTCCTGAGGCTCGAGAGGCC
ATGTTCCTGAGGCGAGCAGCTGTGGCCCCTCAGAGGGCCCCTATCCTGCGTCCTGCCTTCGTCCCCCACGTGCTACAGAGAGCAGATTCTGCTCTTTCTTCTGCAGCTGGCGGCCCCCGACCTATGGC
CCTGAGGCCTCCACACCAGGCCCTGGTTGGACCCCCTCTGCCTGGGCCTCCTGGACCACCCATGATGCTACCACCAATGGCTCGGGCACCTGGACCACCCCTGGGTTCTATGGCTGCCCTGAGACCTC
CCCTGGAAGAGCCAGCAGCTCCTCGAGATCTGGGCCTAGGCCTTGGTTTAGGCCTGAAGGAGAAGGAAGAAGCAGTAGTGGCTGCAGCGGCTGGGCTGGAGGAAGCTAGTGCAGCAGTGGCTGTGGGG
GCAGGAGGAGCCCCAGCCGGGCCTGCAGTCATTGGTCCCAGCCTCCCGCTGGCCCTAGCCATGCCCTTGCCTGAGCCCGAGCCCTTGCCCCTCCCGCTGGAGGTGGTCCGTGGCCTGCTGCCTCCACT
TCGAATTCCTGAGCTCCTGTCTCTGCGCCCACGACCTCGGCCCCCTCGGCCTGAGCCACCTCCTGGCCTCATGGCCCTAGAGGTTCCAGAGCCACTGGGTGAAGACAAGAAGAAAGGCAAGCCAGAGA
AATTGAAACGCTGCATTCGTACAGCAGCAGGGAGCAGCTGGGAGGACCCCAGCCTGCTGGAGTGGGATGCCGATGACTTCCGAATCTTCTGCGGGGATCTGGGCAATGAGGTGAACGATGACATCTTG
GCACGAGCCTTCAGCCGTTTCCCATCCTTCCTTAAGGCGAAGGTGATCCGTGACAAGCGCACAGGCAAAACCAAGGGCTATGGCTTTGTCAGCTTCAAAGACCCCAGTGACTATGTGCGTGCCATGCG
TGAGATGAATGGGAAGTACGTGGGCTCACGCCCCATCAAGCTTCGCAAAAGCATGTGGAAGGACCGGAATCTGGATGTGGTCCGTAAGAAGCAGAAGGAAAAGAAAAAGTTGGGCCTCAGATAGGGTC
TGTGGCTAGGCACCCGCTCCCACCCGGCCGTGCGCTAGCTTCTTCCAACAGTTGTCTGTGGGAAACCCCCAGCTGTCCACTCACCTCTCCCAAAACCAGTTTCAATAAATTACCTTCATTTCCATCTC
AAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006228781 ⟹ XP_006228843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	95,026,054 - 95,036,020 (-)	NCBI
mRatBN7.2	1	85,898,622 - 85,908,569 (-)	NCBI
Rnor_6.0	1	89,099,300 - 89,109,248 (-)	NCBI
Rnor_5.0	1	90,254,914 - 90,264,857 (-)	NCBI

Sequence:

show sequence

TCCTCACGCAGCGCATCCGTCGCGGTAATCCACACGTCATCGGCCGGCTCCCACCCTGAGGGGA
CAGGGACTCGACCGTAGAACCCGCGGCTGCGGCTGAAAAGAGCGGCGAAGGCCATGGCATCAGCGATGGCCGGAGCGGGACCAGCTCCGGGACTCCCGGTGGCGGGAGGGCCCGTGGTCCCGGGGCCT
GGTGTCGGCATCCCGGGCAAGAGCGGCGAAGAACGCTTGAAAGAAATGGAGGCGGAGATGGCCCTGTTTGAGCAAGAAGTACTGGGAGCTCCGGTGACCGGAATCCCAACTGCTGTGCCTGCGGTGCC
CACAGTGGAGGCGATGCAGGTTCCCCCAGCACCTGTGATCCGCCCAATTATCGCCACCAACACATATCAACAGGTCCAACAGACCCTGGAGGCCCGGGCAGCTGCTGCAGCCACAGTAGTTCCTCCCA
TGGTGGGAGGCCCTCCTTTTGTGGGCCCAGTTGGCTTTGGCCCTGCTGATCGAAGTCACCTGGACAGTCCTGAGGCTCGAGAGGCCATGTTCCTGAGGCGAGCAGCTGGCGGCCCCCGACCTATGGCC
CTGAGGCCTCCACACCAGGCCCTGGTTGGACCCCCTCTGCCTGGGCCTCCTGGACCACCCATGATGCTACCACCAATGGCTCGGGCACCTGGACCACCCCTGGGTTCTATGGCTGCCCTGAGACCTCC
CCTGGAAGAGCCAGCAGCTCCTCGAGATCTGGGCCTAGGCCTTGGTTTAGGCCTGAAGGAGAAGGAAGAAGCAGTAGTGGCTGCAGCGGCTGGGCTGGAGGAAGCTAGTGCAGCAGTGGCTGTGGGGG
CAGGAGGAGCCCCAGCCGGGCCTGCAGTCATTGGTCCCAGCCTCCCGCTGGCCCTAGCCATGCCCTTGCCTGAGCCCGAGCCCTTGCCCCTCCCGCTGGAGGTGGTCCGTGGCCTGCTGCCTCCACTT
CGAATTCCTGAGCTCCTGTCTCTGCGCCCACGACCTCGGCCCCCTCGGCCTGAGCCACCTCCTGGCCTCATGGCCCTAGAGGTTCCAGAGCCACTGGGTGAAGACAAGAAGAAAGGCAAGCCAGAGAA
ATTGAAACGCTGCATTCGTACAGCAGCAGGGAGCAGCTGGGAGGACCCCAGCCTGCTGGAGTGGGATGCCGATGACTTCCGAATCTTCTGCGGGGATCTGGGCAATGAGGTGAACGATGACATCTTGG
CACGAGCCTTCAGCCGTTTCCCATCCTTCCTTAAGGCGAAGGTGATCCGTGACAAGCGCACAGGCAAAACCAAGGGCTATGGCTTTGTCAGCTTCAAAGACCCCAGTGACTATGTGCGTGCCATGCGT
GAGATGAATGGGAAGTACGTGGGCTCACGCCCCATCAAGCTTCGCAAAAGCATGTGGAAGGACCGGAATCTGGATGTGGTCCGTAAGAAGCAGAAGGAAAAGAAAAAGTTGGGCCTCAGATAGGGTCT
GTGGCTAGGCACCCGCTCCCACCCGGCCGTGCGCTAGCTTCTTCCAACAGTTGTCTGTGGGAAACCCCCAGCTGTCCACTCACCTCTCCCAAAACCAGTTTCAATAAATTACCTTCATTTCCA

hide sequence


Protein RefSeqs	NP_001014181	(Get FASTA)	NCBI Sequence Viewer
	XP_006228843	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79321	(Get FASTA)	NCBI Sequence Viewer
	EDM07728	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000029729
	ENSRNOP00000029729.3
	ENSRNOP00000070333
GenBank Protein	Q6AXT7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014181 ⟸ NM_001014159

- UniProtKB:

Q6AXT7 (UniProtKB/Swiss-Prot), G3V8X1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASAMAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTVEAMQVPPAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPADR
SHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRDLGLGLGLGLKEKEEAVVAAAAG
LEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCG
DLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR

hide sequence

RefSeq Acc Id:	XP_006228843 ⟸ XM_006228781
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXM6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAMAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTVEAMQVPPAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPADR SHLDSPEAREAMFLRRAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRDLGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRD KRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR hide sequence

Ensembl Acc Id:

ENSRNOP00000029729 ⟸ ENSRNOT00000031254

Ensembl Acc Id:

ENSRNOP00000070333 ⟸ ENSRNOT00000087437

Protein Domains

RRM

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AXT7-F1-model_v2	AlphaFold	Q6AXT7	1-478	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13689924

Promoter ID:

EPDNEW_R449

Type:

initiation region

Name:

Rbm42_1

Description:

RNA binding motif protein 42

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	89,109,222 - 89,109,282	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-60087	BioCyc
Ensembl Genes	ENSRNOG00000024278	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000031254	ENTREZGENE
	ENSRNOT00000031254.4	UniProtKB/Swiss-Prot
	ENSRNOT00000087437	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7135399	IMAGE-MGC_LOAD
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RBM42_RRM	UniProtKB/Swiss-Prot
	RRM-Poly(A)_Binding	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:361545	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94498	IMAGE-MGC_LOAD
NCBI Gene	361545	ENTREZGENE
PANTHER	RNA-BINDING PROTEIN 42	UniProtKB/Swiss-Prot
	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Rbm42	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000024278	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A0G2JXM6	ENTREZGENE, UniProtKB/TrEMBL
	G3V8X1	ENTREZGENE
	Q6AXT7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	G3V8X1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Rbm42	RNA binding motif protein 42	RGD1306184	similar to RIKEN cDNA 3100004P22	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306184	similar to RIKEN cDNA 3100004P22	RGD1306184_predicted	similar to RIKEN cDNA 3100004P22 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306184_predicted	similar to RIKEN cDNA 3100004P22 (predicted)	LOC361545_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361545_predicted	similar to RIKEN cDNA 3100004P22 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar