Rbm42 (RNA binding motif protein 42)

Gene: Rbm42 (RNA binding motif protein 42) Ictidomys tridecemlineatus

Analyze

Symbol:

Rbm42

Name:

RNA binding motif protein 42

RGD ID:

12712943

Description:

ENCODES a protein that exhibits mRNA binding (inferred); nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN U4/U6 x U5 tri-snRNP complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RNA binding motif protein 42, transcript variant X1; RNA binding motif protein 42, transcript variant X2; RNA-binding protein 42

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	10,960,493 - 10,969,107 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	676,537 - 685,419 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	676,775 - 685,415 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brugada syndrome 5 (ISO)

dystonia (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 75 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of mRNA splicing, via spliceosome (IEA,ISO)

Cellular Component

U4/U6 x U5 tri-snRNP complex (IEA,ISO)

Molecular Function

mRNA binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Rbm42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	10,960,493 - 10,969,107 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	676,537 - 685,419 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	676,775 - 685,415 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	35,629,036 - 35,637,685 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	35,629,030 - 35,637,686 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	36,119,938 - 36,128,587 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	40,811,820 - 40,820,427 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	32,833,444 - 32,842,052 (+)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	32,625,223 - 32,633,832 (+)	NCBI		HuRef
CHM1_1	19	36,121,512 - 36,130,119 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,173,991 - 38,182,639 (+)	NCBI		T2T-CHM13v2.0

Rbm42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	30,340,420 - 30,349,653 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	30,340,424 - 30,349,742 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,640,995 - 30,650,228 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,640,999 - 30,650,317 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	31,426,014 - 31,435,247 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	30,349,761 - 30,358,925 (-)	NCBI		MGSCv36	mm8
Celera	7	25,232,827 - 25,242,063 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	18.95	NCBI

Rbm42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	95,026,050 - 95,036,020 (-)	NCBI		GRCr8
mRatBN7.2	1	85,898,618 - 85,908,569 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,898,625 - 85,908,573 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	91,314,846 - 91,324,699 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,781,017 - 99,790,871 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	93,073,133 - 93,082,985 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	89,099,296 - 89,109,248 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,099,277 - 89,109,230 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,254,914 - 90,264,857 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,692,754 - 85,702,684 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	85,770,869 - 85,780,753 (-)	NCBI
Celera	1	80,270,333 - 80,280,263 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Rbm42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	4,844,747 - 4,854,504 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	4,844,780 - 4,854,261 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBM42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	41,625,564 - 41,634,271 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	43,609,051 - 43,617,721 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	32,559,215 - 32,567,899 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,295,079 - 41,303,817 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,294,818 - 41,303,817 (+)	Ensembl	panpan1.1		panPan2

RBM42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,971,365 - 116,985,796 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,065 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,581,376 - 117,589,098 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,581,172 - 117,589,073 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	117,144,359 - 117,152,078 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,987 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,897 (-)	NCBI		UU_Cfam_GSD_1.0

RBM42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	45,074,540 - 45,083,239 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	45,074,527 - 45,083,124 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,531,490 - 40,540,418 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	30,539,718 - 30,548,412 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	30,539,721 - 30,548,414 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	8,335,012 - 8,343,699 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	7,991,462 - 8,000,804 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	7,991,685 - 8,000,314 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005330593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013047 ⟹ ENSSTOP00000011691

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936570	676,537 - 685,419 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000041225 ⟹ ENSSTOP00000030192

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936570	676,537 - 685,419 (-)	Ensembl

RefSeq Acc Id:

XM_005330591 ⟹ XP_005330648

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	10,960,493 - 10,969,107 (+)	NCBI
SpeTri2.0	NW_004936570	676,775 - 685,415 (-)	NCBI

Sequence:

show sequence

GTCAGGCGTCACGTCCTGGCGTTCGTCGCTTTCGCTGAACGTCATCGCAGGCGCCCATCCTGAC
GAAGCCAGAGAGTAGACGGCAGGAACCTCTGCGACCACTGAGCAGAAACAGTAGTAGCAGCGAC
AAGGACGGCTGCAGCAATGGCCGGGGCGATGCCAGCCCCGGGGCTCCCGGGTGCAGGAGGACCC
GTGGTCCCGGGCCCTGGTGCCGGCATCCCGGGCAAGAGCGGCGAGGAACGCTTGAAGGAAATGG
AGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTCCAGTAACTGGAATCCCAACCGC
TGTGCCTGCGGTGCCCACGGTCCCCACGGTCGAAGCGATGCAGGTCCCAGCAGCTCCTGTGATC
CGCCCAATTATCGCGACCAACACATACCAGCAGGTGCAACAGACTCTGGAGGCCCGGGCAGCTG
CTGCAGCCACAGTAGTTCCTCCCATGGTGGGTGGCCCTCCTTTTGTGGGCCCAGTTGGCTTTGG
CCCTGCTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGAAGCCATGTTCCTACGGCGAGCA
GCTGTGGCCCCTCAGAGGGCCCCTATCCTGCGTCCGGCCTTCGTCCCCCACGTGCTACAGAGAG
CAGATTCTGCTCTCTCTCCTGCAGCTGGTGCTCCCCGTCCAATGGCCCTGCGGCCCCCTCACCA
GGCCCTTGTAGGACCCCCTCTTCCTGGGCCCCCTGGACCACCTATGATGCTGCCACCAATGGCT
CGGGCCCCAGGACCCCCCCTGGGCTCTATGGCTGCTCTGAGGCCTCCCCTGGAAGAGCCAGCAG
CACCCCGAGAGCTGGGCCTAGGACTGGGATTGGGCCTGAAAGAGAAGGAAGAAGCAGTGGTGGC
AGCAGCAGCTGGGCTGGAAGAGGCTAGTGCAGCAGTGGCTGTGGGTGCAGGAGGTGCTCCAGCT
GGCCCTGCAGTCATTGGGCCCAGCCTACCACTGGCCCTGGCCATGCCATTGCCGGAACCTGAGC
CCCTACCCCTCCCACTGGAGGTGGTACGTGGCCTGCTGCCCCCACTGCGCATTCCTGAGCTCCT
GTCCTTACGTCCACGACCCCGGCCCCCTCGGCCTGAGCCACCTCCTGGCCTTATGGCTCTTGAG
GTCCCAGAACCCTTGGGTGAAGACAAGAAGAAAGGGAAGCCAGAAAAATTGAAACGCTGCATTC
GCACAGCAGCTGGAAGTAGCTGGGAGGACCCCAGCCTGCTGGAGTGGGATGCAGATGACTTCCG
GATCTTCTGCGGGGATTTGGGCAATGAGGTGAATGATGACATCTTGGCACGTGCCTTCAGCCGC
TTCCCATCCTTCCTTAAGGCTAAGGTGATCCGTGACAAGCGCACAGGCAAGACCAAGGGCTATG
GCTTTGTCAGCTTCAAGGACCCAAGTGACTATGTGCGCGCCATGCGTGAGATGAATGGGAAATA
TGTGGGCTCACGCCCCATCAAGCTTCGTAAGAGCATGTGGAAGGACCGGAACCTGGATGTGGTC
CGCAAGAAGCAGAAGGAAAAGAAGAAGTTGGGACTGAGATAGGGTCTGTGGCTGGGCACCCGCT
CTCATCCGGCCGGGCGCTGGCTCCTCCCCAGAGCTGTCTTTAGAAAACCCTCAACTATCCACAC
ACTTGCCCCAAAACCAGTTTCAATAAATTTACGTTCATTTCCA

hide sequence

RefSeq Acc Id:

XM_005330593 ⟹ XP_005330650

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	10,960,493 - 10,969,107 (+)	NCBI
SpeTri2.0	NW_004936570	676,775 - 685,415 (-)	NCBI

Sequence:

show sequence

GTCAGGCGTCACGTCCTGGCGTTCGTCGCTTTCGCTGAACGTCATCGCAGGCGCCCATCCTGAC
GAAGCCAGAGAGTAGACGGCAGGAACCTCTGCGACCACTGAGCAGAAACAGTAGTAGCAGCGAC
AAGGACGGCTGCAGCAATGGCCGGGGCGATGCCAGCCCCGGGGCTCCCGGGTGCAGGAGGACCC
GTGGTCCCGGGCCCTGGTGCCGGCATCCCGGGCAAGAGCGGCGAGGAACGCTTGAAGGAAATGG
AGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTCCAGTAACTGGAATCCCAACCGC
TGTGCCTGCGGTGCCCACGGTCCCCACGGTCGAAGCGATGCAGGTCCCAGCAGCTCCTGTGATC
CGCCCAATTATCGCGACCAACACATACCAGCAGGTGCAACAGACTCTGGAGGCCCGGGCAGCTG
CTGCAGCCACAGTAGTTCCTCCCATGGTGGGTGGCCCTCCTTTTGTGGGCCCAGTTGGCTTTGG
CCCTGCTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGAAGCCATGTTCCTACGGCGAGCA
GCTGGTGCTCCCCGTCCAATGGCCCTGCGGCCCCCTCACCAGGCCCTTGTAGGACCCCCTCTTC
CTGGGCCCCCTGGACCACCTATGATGCTGCCACCAATGGCTCGGGCCCCAGGACCCCCCCTGGG
CTCTATGGCTGCTCTGAGGCCTCCCCTGGAAGAGCCAGCAGCACCCCGAGAGCTGGGCCTAGGA
CTGGGATTGGGCCTGAAAGAGAAGGAAGAAGCAGTGGTGGCAGCAGCAGCTGGGCTGGAAGAGG
CTAGTGCAGCAGTGGCTGTGGGTGCAGGAGGTGCTCCAGCTGGCCCTGCAGTCATTGGGCCCAG
CCTACCACTGGCCCTGGCCATGCCATTGCCGGAACCTGAGCCCCTACCCCTCCCACTGGAGGTG
GTACGTGGCCTGCTGCCCCCACTGCGCATTCCTGAGCTCCTGTCCTTACGTCCACGACCCCGGC
CCCCTCGGCCTGAGCCACCTCCTGGCCTTATGGCTCTTGAGGTCCCAGAACCCTTGGGTGAAGA
CAAGAAGAAAGGGAAGCCAGAAAAATTGAAACGCTGCATTCGCACAGCAGCTGGAAGTAGCTGG
GAGGACCCCAGCCTGCTGGAGTGGGATGCAGATGACTTCCGGATCTTCTGCGGGGATTTGGGCA
ATGAGGTGAATGATGACATCTTGGCACGTGCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCTAA
GGTGATCCGTGACAAGCGCACAGGCAAGACCAAGGGCTATGGCTTTGTCAGCTTCAAGGACCCA
AGTGACTATGTGCGCGCCATGCGTGAGATGAATGGGAAATATGTGGGCTCACGCCCCATCAAGC
TTCGTAAGAGCATGTGGAAGGACCGGAACCTGGATGTGGTCCGCAAGAAGCAGAAGGAAAAGAA
GAAGTTGGGACTGAGATAGGGTCTGTGGCTGGGCACCCGCTCTCATCCGGCCGGGCGCTGGCTC
CTCCCCAGAGCTGTCTTTAGAAAACCCTCAACTATCCACACACTTGCCCCAAAACCAGTTTCAA
TAAATTTACGTTCATTTCCA

hide sequence

RefSeq Acc Id:

XM_040279489 ⟹ XP_040135423

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	10,960,493 - 10,969,107 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005330648	(Get FASTA)	NCBI Sequence Viewer
	XP_005330650	(Get FASTA)	NCBI Sequence Viewer
	XP_040135423	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011691.3
	ENSSTOP00000030192.1
GenBank Protein	KAG3255858	(Get FASTA)	NCBI Sequence Viewer
	KAG3255859	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005330648 ⟸ XM_005330591
- Peptide Label:	isoform X1
- UniProtKB:	A0A287D9F0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAMPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVP TVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPADRS HLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSPAAGAPRPMALRPPHQALVGP PLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGL EEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPR PRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGD LGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRP IKLRKSMWKDRNLDVVRKKQKEKKKLGLR hide sequence

RefSeq Acc Id:	XP_005330650 ⟸ XM_005330593
- Peptide Label:	isoform X3
- UniProtKB:	A0A287D9F0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAMPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVP TVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPADRS HLDSPEAREAMFLRRAAGAPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAAL RPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLAL AMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGK PEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDK RTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR hide sequence

RefSeq Acc Id:	XP_040135423 ⟸ XM_040279489
- Peptide Label:	isoform X2
- UniProtKB:	I3MK98 (UniProtKB/TrEMBL), A0A287D9F0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000030192 ⟸ ENSSTOT00000041225

RefSeq Acc Id:

ENSSTOP00000011691 ⟸ ENSSTOT00000013047

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013050	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013047.3	UniProtKB/TrEMBL
	ENSSTOT00000041225.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM42_RRM	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	Rbm42	ENTREZGENE
PANTHER	RNA-BINDING PROTEIN 42	UniProtKB/TrEMBL
	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A287D9F0	ENTREZGENE, UniProtKB/TrEMBL
	I3MK98	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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