RBM42 (RNA binding motif protein 42)

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Gene: RBM42 (RNA binding motif protein 42) Canis lupus familiaris

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Symbol:

RBM42 (Ensembl: ETV2)

Name:

RNA binding motif protein 42

RGD ID:

12118244

Description:

ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN U4/U6 x U5 tri-snRNP complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RNA-binding protein 42

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,971,365 - 116,985,796 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,065 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,581,376 - 117,589,098 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,581,172 - 117,589,073 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	117,144,359 - 117,152,078 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,987 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,897 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brugada syndrome 5 (ISO)

dystonia (ISO)

hereditary spastic paraplegia 75 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of mRNA splicing, via spliceosome (IEA,ISO)

Cellular Component

U4/U6 x U5 tri-snRNP complex (IEA)

Molecular Function

mRNA binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RBM42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,971,365 - 116,985,796 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,065 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,581,376 - 117,589,098 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,581,172 - 117,589,073 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	117,144,359 - 117,152,078 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,987 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,897 (-)	NCBI		UU_Cfam_GSD_1.0

RBM42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	35,629,036 - 35,637,685 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	35,629,030 - 35,637,686 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	36,119,938 - 36,128,587 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	40,811,820 - 40,820,427 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	32,833,444 - 32,842,052 (+)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	32,625,223 - 32,633,832 (+)	NCBI		HuRef
CHM1_1	19	36,121,512 - 36,130,119 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,173,991 - 38,182,639 (+)	NCBI		T2T-CHM13v2.0

Rbm42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	30,340,420 - 30,349,653 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	30,340,424 - 30,349,742 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,640,995 - 30,650,228 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,640,999 - 30,650,317 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	31,426,014 - 31,435,247 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	30,349,761 - 30,358,925 (-)	NCBI		MGSCv36	mm8
Celera	7	25,232,827 - 25,242,063 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	18.95	NCBI

Rbm42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	95,026,050 - 95,036,020 (-)	NCBI		GRCr8
mRatBN7.2	1	85,898,618 - 85,908,569 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,898,625 - 85,908,573 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	91,314,846 - 91,324,699 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,781,017 - 99,790,871 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	93,073,133 - 93,082,985 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	89,099,296 - 89,109,248 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,099,277 - 89,109,230 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,254,914 - 90,264,857 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,692,754 - 85,702,684 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	85,770,869 - 85,780,753 (-)	NCBI
Celera	1	80,270,333 - 80,280,263 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Rbm42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	4,844,747 - 4,854,504 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	4,844,780 - 4,854,261 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBM42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	41,625,564 - 41,634,271 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	43,609,051 - 43,617,721 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	32,559,215 - 32,567,899 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,295,079 - 41,303,817 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,294,818 - 41,303,817 (+)	Ensembl	panpan1.1		panPan2

Rbm42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	10,960,493 - 10,969,107 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	676,537 - 685,419 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	676,775 - 685,415 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	45,074,540 - 45,083,239 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	45,074,527 - 45,083,124 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,531,490 - 40,540,418 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	30,539,718 - 30,548,412 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	30,539,721 - 30,548,414 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	8,335,012 - 8,343,699 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	7,991,462 - 8,000,804 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	7,991,685 - 8,000,314 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RBM42
52 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	20	20	15	6	6	6	5	30	19	11	13	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005616703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038529312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038529313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038529314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038593570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038593571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038593572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038657423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038657424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038657425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_848603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_862738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00845003632 ⟹ ENSCAFP00845002884

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,172 - 117,589,068 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003656 ⟹ ENSCAFP00845002905

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,376 - 117,589,060 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003678 ⟹ ENSCAFP00845002923

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,379 - 117,589,073 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003686 ⟹ ENSCAFP00845002930

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,379 - 117,589,073 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003695 ⟹ ENSCAFP00845002937

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,384 - 117,589,073 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003720 ⟹ ENSCAFP00845002956

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,511 - 117,589,068 (-)	Ensembl

RefSeq Acc Id:

XM_005616703 ⟹ XP_005616760

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,065 (-)	NCBI

Sequence:

show sequence

AACGTCAATCGCGGGCGCCCACCCCGACAAGACCAGAGAGTAGACAGCGGAACTGGCGGAGGCA
GCTGAGCTGAGGCGGCAGTAGCGGCGACAGCGACGGCTGCAGCGATGGCCGGGGCGGGGCCAGC
CCCGGGACTCCCGGGTGCAGGAGGACCTGTGGTCCCGGGCGCCGGCATGCCGGGCAAGAGCGGG
GAGGAACGCCTGAAGGAGATGGAGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTC
CGGTAACCGGCATCCCTACTGCTGTGCCTGCGGTGCCCACGGTCCCCACGGTGGAAGCGATGCA
GGTCCCGGCAGCTCCTGTGATCCGCCCAATTATCGCAACCAACACTTACCAGCAGGTCCAACAG
ACTCTGGAGGCCCGAGCAGCTGCTGCAGCCACAGTGGTTCCTCCGATGGTGGGTGGCCCTCCTT
TTGTGGGTCCAGTTGGCTTTGGCCCTGGTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGA
AGCTATGTTCCTGCGTCGAGCAGCTGTAGCCCCCCAGAGGGCCCCTATCCTGCGTCCGGCCTTC
GTCCCCCACGTGCTACAGAGAGCAGCAGGTGGTCCTCGCCCTATGGCCCTGCGGCCCCCTCACC
AGGCCCTCGTGGGCCCCCCTCTTCCTGGCCCCCCTGGACCACCTATGATGCTGCCACCAATGGC
TCGGGCCCCAGGGCCCCCCCTGGGCTCCATGGCTGCTCTGAGACCTCCCCTGGAAGAGCCAGCA
ACACCTCGAGAGCTGGGGCTGGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGCAGTGGTGG
CTGCAGCAGCCGGGCTGGAAGAGGCTAGCGCAGCAGTGGCTGTTGGGGCAGGAGGTGCCCCCAC
CGGCCCTGCCGTCATTGGTCCCAGCCTGCCGTTGGCCCTGGCCATGCCTTTGCCTGAGCCTGAG
CCCCTGCCTCTACCGCTGGAAGTTGTACGAGGCCTACTGCCCCCACTGCGCATTCCTGAGCTCC
TGTCCCTGCGTCCACGACCCCGGCCCCCACGGCCTGAGCCACCCCCTGGCCTCATGGCTCTTGA
GGTCCCAGAGCCCTTGGGTGAGGACAAGAAGAAAGGAAAGCCAGAGAAATTGAAACGCTGCATT
CGCACAGCAGCTGGGAGCAGCTGGGAGGACCCCAGTCTGCTAGAGTGGGATGCAGATGACTTCC
GGATCTTCTGTGGGGACTTGGGCAATGAAGTGAATGATGACATCTTGGCACGAGCCTTCAGCCG
CTTCCCATCCTTCCTTAAGGCTAAGGTGATCCGAGACAAGCGCACGGGCAAGACCAAGGGCTAT
GGCTTTGTCAGCTTTAAGGATCCCAGCGACTACGTGCGCGCCATGCGTGAGATGAATGGGAAGT
ATGTGGGCTCGCGCCCCATCAAGCTGCGCAAGAGTATGTGGAAGGACCGGAACCTGGACGTGGT
ACGCAAGAAGCAGAAGGAGAAGAAGAAACTGGGCCTGAGATAGGGTCTGTGGCCGGGCACCCGC
TCCCTCCTGGCCGGGCGCTGGCTCTTCTCCCCGTTCTCTTTGGAAGATCCTCAAAAATCCACTC
ACCACCTCCCCAAAACCAGTTTCAATAAATTTACGTTATTTCTGTCCCTG

hide sequence

RefSeq Acc Id:

XM_038468539 ⟹ XP_038324467

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	117,144,359 - 117,152,077 (-)	NCBI

RefSeq Acc Id:

XM_038468540 ⟹ XP_038324468

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	117,144,359 - 117,152,078 (-)	NCBI

RefSeq Acc Id:

XM_038468541 ⟹ XP_038324469

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	117,144,359 - 117,152,077 (-)	NCBI

RefSeq Acc Id:

XM_038529312 ⟹ XP_038385240

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,896 (-)	NCBI

RefSeq Acc Id:

XM_038529313 ⟹ XP_038385241

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,897 (-)	NCBI

RefSeq Acc Id:

XM_038529314 ⟹ XP_038385242

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,896 (-)	NCBI

RefSeq Acc Id:

XM_038593570 ⟹ XP_038449498

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,986 (-)	NCBI

RefSeq Acc Id:

XM_038593571 ⟹ XP_038449499

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,987 (-)	NCBI

RefSeq Acc Id:

XM_038593572 ⟹ XP_038449500

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,986 (-)	NCBI

RefSeq Acc Id:

XM_038657423 ⟹ XP_038513351

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	117,581,376 - 117,589,097 (-)	NCBI

RefSeq Acc Id:

XM_038657424 ⟹ XP_038513352

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	117,581,376 - 117,589,098 (-)	NCBI

RefSeq Acc Id:

XM_038657425 ⟹ XP_038513353

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	117,581,376 - 117,589,097 (-)	NCBI

RefSeq Acc Id:

XM_848603 ⟹ XP_853696

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,064 (-)	NCBI

Sequence:

show sequence

AACGTCAATCGCGGGCGCCCACCCCGACAAGACCAGAGAGTAGACAGCGGAACTGGCGGAGGCA
GCTGAGCTGAGGCGGCAGTAGCGGCGACAGCGACGGCTGCAGCGATGGCCGGGGCGGGGCCAGC
CCCGGGACTCCCGGGTGCAGGAGGACCTGTGGTCCCGGGCGCCGGCATGCCGGGCAAGAGCGGG
GAGGAACGCCTGAAGGAGATGGAGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTC
CGGTAACCGGCATCCCTACTGCTGTGCCTGCGGTGCCCACGGTCCCCACGGTGGAAGCGATGCA
GGTCCCGGCAGCTCCTGTGATCCGCCCAATTATCGCAACCAACACTTACCAGCAGGTCCAACAG
ACTCTGGAGGCCCGAGCAGCTGCTGCAGCCACAGTGGTTCCTCCGATGGTGGGTGGCCCTCCTT
TTGTGGGTCCAGTTGGCTTTGGCCCTGGTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGA
AGCTATGTTCCTGCGTCGAGCAGCTGTAGCCCCCCAGAGGGCCCCTATCCTGCGTCCGGCCTTC
GTCCCCCACGTGCTACAGAGAGCAGATTCTGCTCTTTCTTCTGCAGCAGGTGGTCCTCGCCCTA
TGGCCCTGCGGCCCCCTCACCAGGCCCTCGTGGGCCCCCCTCTTCCTGGCCCCCCTGGACCACC
TATGATGCTGCCACCAATGGCTCGGGCCCCAGGGCCCCCCCTGGGCTCCATGGCTGCTCTGAGA
CCTCCCCTGGAAGAGCCAGCAACACCTCGAGAGCTGGGGCTGGGCCTGGGGTTGGGCCTGAAAG
AGAAGGAAGAGGCAGTGGTGGCTGCAGCAGCCGGGCTGGAAGAGGCTAGCGCAGCAGTGGCTGT
TGGGGCAGGAGGTGCCCCCACCGGCCCTGCCGTCATTGGTCCCAGCCTGCCGTTGGCCCTGGCC
ATGCCTTTGCCTGAGCCTGAGCCCCTGCCTCTACCGCTGGAAGTTGTACGAGGCCTACTGCCCC
CACTGCGCATTCCTGAGCTCCTGTCCCTGCGTCCACGACCCCGGCCCCCACGGCCTGAGCCACC
CCCTGGCCTCATGGCTCTTGAGGTCCCAGAGCCCTTGGGTGAGGACAAGAAGAAAGGAAAGCCA
GAGAAATTGAAACGCTGCATTCGCACAGCAGCTGGGAGCAGCTGGGAGGACCCCAGTCTGCTAG
AGTGGGATGCAGATGACTTCCGGATCTTCTGTGGGGACTTGGGCAATGAAGTGAATGATGACAT
CTTGGCACGAGCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCTAAGGTGATCCGAGACAAGCGC
ACGGGCAAGACCAAGGGCTATGGCTTTGTCAGCTTTAAGGATCCCAGCGACTACGTGCGCGCCA
TGCGTGAGATGAATGGGAAGTATGTGGGCTCGCGCCCCATCAAGCTGCGCAAGAGTATGTGGAA
GGACCGGAACCTGGACGTGGTACGCAAGAAGCAGAAGGAGAAGAAGAAACTGGGCCTGAGATAG
GGTCTGTGGCCGGGCACCCGCTCCCTCCTGGCCGGGCGCTGGCTCTTCTCCCCGTTCTCTTTGG
AAGATCCTCAAAAATCCACTCACCACCTCCCCAAAACCAGTTTCAATAAATTTACGTTATTTCT
GTCCCTG

hide sequence

RefSeq Acc Id:

XM_862738 ⟹ XP_867831

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,064 (-)	NCBI

Sequence:

show sequence

AACGTCAATCGCGGGCGCCCACCCCGACAAGACCAGAGAGTAGACAGCGGAACTGGCGGAGGCA
GCTGAGCTGAGGCGGCAGTAGCGGCGACAGCGACGGCTGCAGCGATGGCCGGGGCGGGGCCAGC
CCCGGGACTCCCGGGTGCAGGAGGACCTGTGGTCCCGGGCGCCGGCATGCCGGGCAAGAGCGGG
GAGGAACGCCTGAAGGAGATGGAGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTC
CGGTAACCGGCATCCCTACTGCTGTGCCTGCGGTGCCCACGGTCCCCACGGTGGAAGCGATGCA
GGTCCCGGCAGCTCCTGTGATCCGCCCAATTATCGCAACCAACACTTACCAGCAGGTCCAACAG
ACTCTGGAGGCCCGAGCAGCTGCTGCAGCCACAGTGGTTCCTCCGATGGTGGGTGGCCCTCCTT
TTGTGGGTCCAGTTGGCTTTGGCCCTGGTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGA
AGCTATGTTCCTGCGTCGAGCAGCAGGTGGTCCTCGCCCTATGGCCCTGCGGCCCCCTCACCAG
GCCCTCGTGGGCCCCCCTCTTCCTGGCCCCCCTGGACCACCTATGATGCTGCCACCAATGGCTC
GGGCCCCAGGGCCCCCCCTGGGCTCCATGGCTGCTCTGAGACCTCCCCTGGAAGAGCCAGCAAC
ACCTCGAGAGCTGGGGCTGGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGCAGTGGTGGCT
GCAGCAGCCGGGCTGGAAGAGGCTAGCGCAGCAGTGGCTGTTGGGGCAGGAGGTGCCCCCACCG
GCCCTGCCGTCATTGGTCCCAGCCTGCCGTTGGCCCTGGCCATGCCTTTGCCTGAGCCTGAGCC
CCTGCCTCTACCGCTGGAAGTTGTACGAGGCCTACTGCCCCCACTGCGCATTCCTGAGCTCCTG
TCCCTGCGTCCACGACCCCGGCCCCCACGGCCTGAGCCACCCCCTGGCCTCATGGCTCTTGAGG
TCCCAGAGCCCTTGGGTGAGGACAAGAAGAAAGGAAAGCCAGAGAAATTGAAACGCTGCATTCG
CACAGCAGCTGGGAGCAGCTGGGAGGACCCCAGTCTGCTAGAGTGGGATGCAGATGACTTCCGG
ATCTTCTGTGGGGACTTGGGCAATGAAGTGAATGATGACATCTTGGCACGAGCCTTCAGCCGCT
TCCCATCCTTCCTTAAGGCTAAGGTGATCCGAGACAAGCGCACGGGCAAGACCAAGGGCTATGG
CTTTGTCAGCTTTAAGGATCCCAGCGACTACGTGCGCGCCATGCGTGAGATGAATGGGAAGTAT
GTGGGCTCGCGCCCCATCAAGCTGCGCAAGAGTATGTGGAAGGACCGGAACCTGGACGTGGTAC
GCAAGAAGCAGAAGGAGAAGAAGAAACTGGGCCTGAGATAGGGTCTGTGGCCGGGCACCCGCTC
CCTCCTGGCCGGGCGCTGGCTCTTCTCCCCGTTCTCTTTGGAAGATCCTCAAAAATCCACTCAC
CACCTCCCCAAAACCAGTTTCAATAAATTTACGTTATTTCTGTCCCTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005616760	(Get FASTA)	NCBI Sequence Viewer
	XP_038324467	(Get FASTA)	NCBI Sequence Viewer
	XP_038324468	(Get FASTA)	NCBI Sequence Viewer
	XP_038324469	(Get FASTA)	NCBI Sequence Viewer
	XP_038385240	(Get FASTA)	NCBI Sequence Viewer
	XP_038385241	(Get FASTA)	NCBI Sequence Viewer
	XP_038385242	(Get FASTA)	NCBI Sequence Viewer
	XP_038449498	(Get FASTA)	NCBI Sequence Viewer
	XP_038449499	(Get FASTA)	NCBI Sequence Viewer
	XP_038449500	(Get FASTA)	NCBI Sequence Viewer
	XP_038513351	(Get FASTA)	NCBI Sequence Viewer
	XP_038513352	(Get FASTA)	NCBI Sequence Viewer
	XP_038513353	(Get FASTA)	NCBI Sequence Viewer
	XP_853696	(Get FASTA)	NCBI Sequence Viewer
	XP_867831	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000010297.4
	ENSCAFP00000046028.1
	ENSCAFP00000049516.2
	ENSCAFP00000051256.1
	ENSCAFP00000064176.1
	ENSCAFP00000072562.1
	ENSCAFP00030009018.1
	ENSCAFP00030009068.1
	ENSCAFP00030009100.1
	ENSCAFP00030009145.1
	ENSCAFP00030009155.1
	ENSCAFP00030009178.1
	ENSCAFP00040000656.1
	ENSCAFP00040000679.1
	ENSCAFP00040000703.1
	ENSCAFP00040000729.1
	ENSCAFP00040000739.1
	ENSCAFP00040000752.1
	ENSCAFP00845002884.1
	ENSCAFP00845002905
	ENSCAFP00845002905.1
	ENSCAFP00845002923.1
	ENSCAFP00845002930.1
	ENSCAFP00845002937
	ENSCAFP00845002937.1
	ENSCAFP00845002956.1

RefSeq Acc Id:	XP_867831 ⟸ XM_862738
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0PSH5 (UniProtKB/TrEMBL), A0A8I3MF64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAGPAPGLPGAGGPVVPGAGMPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTV PTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHL DSPEAREAMFLRRAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRP PLEEPATPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPTGPAVIGPSLPLALAM PLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPE KLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRT GKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR hide sequence

RefSeq Acc Id:	XP_005616760 ⟸ XM_005616703
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0PSH5 (UniProtKB/TrEMBL), A0A8I3MF64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAGPAPGLPGAGGPVVPGAGMPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTV PTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHL DSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRAAGGPRPMALRPPHQALVGPPLPGPPGPP MMLPPMARAPGPPLGSMAALRPPLEEPATPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAV GAGGAPTGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPP PGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDI LARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK DRNLDVVRKKQKEKKKLGLR hide sequence

RefSeq Acc Id:	XP_853696 ⟸ XM_848603
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0MH84 (UniProtKB/TrEMBL), A0A8I3MK86 (UniProtKB/TrEMBL), A0A8C0MB08 (UniProtKB/TrEMBL), A0A8I3MN86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAGPAPGLPGAGGPVVPGAGMPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTV PTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHL DSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAGGPRPMALRPPHQALVGPPL PGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPATPRELGLGLGLGLKEKEEAVVAAAAGLEE ASAAVAVGAGGAPTGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPR PPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLG NEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK LRKSMWKDRNLDVVRKKQKEKKKLGLR hide sequence

RefSeq Acc Id:	XP_038324468 ⟸ XM_038468540
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038324469 ⟸ XM_038468541
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038324467 ⟸ XM_038468539
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038449499 ⟸ XM_038593571
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038449500 ⟸ XM_038593572
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038449498 ⟸ XM_038593570
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038513352 ⟸ XM_038657424
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0PSH5 (UniProtKB/TrEMBL), A0A8I3MF64 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038513353 ⟸ XM_038657425
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0PSH5 (UniProtKB/TrEMBL), A0A8I3MF64 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038513351 ⟸ XM_038657423
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0MH84 (UniProtKB/TrEMBL), A0A8I3MK86 (UniProtKB/TrEMBL), A0A8C0MB08 (UniProtKB/TrEMBL), A0A8I3MN86 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038385241 ⟸ XM_038529313
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0PSH5 (UniProtKB/TrEMBL), A0A8I3MF64 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038385242 ⟸ XM_038529314
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0PSH5 (UniProtKB/TrEMBL), A0A8I3MF64 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038385240 ⟸ XM_038529312
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0MB08 (UniProtKB/TrEMBL), A0A8C0MH84 (UniProtKB/TrEMBL), A0A8I3MK86 (UniProtKB/TrEMBL), A0A8I3MN86 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845002937 ⟸ ENSCAFT00845003695

Ensembl Acc Id:

ENSCAFP00845002905 ⟸ ENSCAFT00845003656

Ensembl Acc Id:

ENSCAFP00845002956 ⟸ ENSCAFT00845003720

Ensembl Acc Id:

ENSCAFP00845002884 ⟸ ENSCAFT00845003632

Ensembl Acc Id:

ENSCAFP00845002930 ⟸ ENSCAFT00845003686

Ensembl Acc Id:

ENSCAFP00845002923 ⟸ ENSCAFT00845003678

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000006916	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030005620	UniProtKB/TrEMBL
	ENSCAFG00040000448	UniProtKB/TrEMBL
	ENSCAFG00845002092	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000011116.5	UniProtKB/TrEMBL
	ENSCAFT00000060831.2	UniProtKB/TrEMBL
	ENSCAFT00000060984.2	UniProtKB/TrEMBL
	ENSCAFT00000067486.2	UniProtKB/TrEMBL
	ENSCAFT00000088285.2	UniProtKB/TrEMBL
	ENSCAFT00000105472.1	UniProtKB/TrEMBL
	ENSCAFT00030010293.1	UniProtKB/TrEMBL
	ENSCAFT00030010359.1	UniProtKB/TrEMBL
	ENSCAFT00030010391.1	UniProtKB/TrEMBL
	ENSCAFT00030010439.1	UniProtKB/TrEMBL
	ENSCAFT00030010451.1	UniProtKB/TrEMBL
	ENSCAFT00030010482.1	UniProtKB/TrEMBL
	ENSCAFT00040000777.1	UniProtKB/TrEMBL
	ENSCAFT00040000803.1	UniProtKB/TrEMBL
	ENSCAFT00040000828.1	UniProtKB/TrEMBL
	ENSCAFT00040000862.1	UniProtKB/TrEMBL
	ENSCAFT00040000872.1	UniProtKB/TrEMBL
	ENSCAFT00040000888.1	UniProtKB/TrEMBL
	ENSCAFT00845003632.1	UniProtKB/TrEMBL
	ENSCAFT00845003656	ENTREZGENE
	ENSCAFT00845003656.1	UniProtKB/TrEMBL
	ENSCAFT00845003678.1	UniProtKB/TrEMBL
	ENSCAFT00845003686.1	UniProtKB/TrEMBL
	ENSCAFT00845003695	ENTREZGENE
	ENSCAFT00845003695.1	UniProtKB/TrEMBL
	ENSCAFT00845003720.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM42_RRM	UniProtKB/TrEMBL
	RRM-Poly(A)_Binding	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	RBM42	ENTREZGENE
PANTHER	RNA-BINDING PROTEIN 42	UniProtKB/TrEMBL
	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8C0MB08	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0MGU5_CANLF	UniProtKB/TrEMBL
	A0A8C0MH84	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PSH5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RDF7_CANLF	UniProtKB/TrEMBL
	A0A8C0RUJ4_CANLF	UniProtKB/TrEMBL
	A0A8I3MF64	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MK86	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MKS9_CANLF	UniProtKB/TrEMBL
	A0A8I3MN86	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MNE8_CANLF	UniProtKB/TrEMBL
	A0A8I3MRT5_CANLF	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar