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Gene: RBM42 (RNA binding motif protein 42) Canis lupus familiaris

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Symbol:

RBM42 (Ensembl: ETV2)

Name:

RNA binding motif protein 42

RGD ID:

12118244

Description:

ENCODES a protein that exhibits mRNA binding (inferred); nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN negative regulation of mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN U4/U6 x U5 tri-snRNP complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RNA-binding protein 42

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,971,365 - 116,985,796 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,065 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,581,376 - 117,589,098 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,581,172 - 117,589,073 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	117,144,359 - 117,152,078 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,987 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,897 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RBM42	Dog	Brugada syndrome 5		ISO	RGD:1601847	8554872	ClinVar Annotator: match by term: Brugada syndrome 5	ClinVar	PMID:28492532
RBM42	Dog	dystonia		ISO	RGD:1601847	8554872	ClinVar Annotator: match by term: Dystonic disorder	ClinVar	PMID:32581362
RBM42	Dog	hereditary spastic paraplegia 75		ISO	RGD:1601847	8554872	ClinVar Annotator: match by term: Hereditary spastic paraplegia 75	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RBM42	Dog	negative regulation of mRNA splicing, via spliceosome	acts_upstream_of_or_within	IEA	UniProtKB:Q91V81\|ensembl:ENSMUSP00000040005	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RBM42	Dog	U4/U6 x U5 tri-snRNP complex	part_of	IEA	UniProtKB:Q9BTD8\|ensembl:ENSP00000262633	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RBM42	Dog	mRNA binding	enables	IEA	InterPro:IPR050825	150520179		InterPro	GO_REF:0000002
RBM42	Dog	mRNA binding	enables	IBA	PANTHER:PTN002935362\|SGD:S000001128\|SGD:S000004961\|TAIR:locus:2012211\|TAIR:locus:2014340\|TAIR:locus:2015398\|TAIR:locus:2015403\|TAIR:locus:2018794\|TAIR:locus:2027372\|TAIR:locus:2087457\|TAIR:locus:2094098\|TAIR:locus:2116322\|TAIR:locus:2150215\|TAIR:locus:2160210\|UniProtKB:Q0J9Y2\|UniProtKB:Q5ARJ0	150520179		GO_Central	GO_REF:0000033
RBM42	Dog	nucleic acid binding	enables	IEA	InterPro:IPR035979	150520179		InterPro	GO_REF:0000002
RBM42	Dog	protein binding	enables	ISO	UniProtKB:P25788	9068941	PMID:25416956	IntAct	PMID:25416956
RBM42	Dog	protein binding	enables	ISO	UniProtKB:P25788\|UniProtKB:P61978	9068941	PMID:35271311	IntAct	PMID:35271311
RBM42	Dog	protein binding	enables	ISO	UniProtKB:P61978	9068941	PMID:16189514, PMID:22365833, PMID:29892012	IntAct	PMID:16189514\|PMID:22365833\|PMID:29892012
RBM42	Dog	protein binding	enables	ISO	UniProtKB:P86480\|UniProtKB:Q6ZRY4	9068941	PMID:32296183	IntAct	PMID:32296183
RBM42	Dog	RNA binding	enables	IEA	InterPro:IPR000504	150520179		InterPro	GO_REF:0000002
RBM42	Dog	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	150520179		UniProt	GO_REF:0000043
RBM42	Dog	RNA binding	enables	IEA	UniRule:UR000414619	150520179		UniProt	GO_REF:0000104

PMID:30032202

RBM42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,971,365 - 116,985,796 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,065 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,581,376 - 117,589,098 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,581,172 - 117,589,073 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	117,144,359 - 117,152,078 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,987 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,897 (-)	NCBI		UU_Cfam_GSD_1.0

RBM42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	35,629,036 - 35,637,685 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	35,629,030 - 35,637,686 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	36,119,938 - 36,128,587 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	40,811,820 - 40,820,427 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	32,833,444 - 32,842,052 (+)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	32,625,223 - 32,633,832 (+)	NCBI		HuRef
CHM1_1	19	36,121,512 - 36,130,119 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,173,991 - 38,182,639 (+)	NCBI		T2T-CHM13v2.0

Rbm42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	30,340,420 - 30,349,653 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	30,340,424 - 30,349,742 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,640,995 - 30,650,228 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,640,999 - 30,650,317 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	31,426,014 - 31,435,247 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	30,349,761 - 30,358,925 (-)	NCBI		MGSCv36	mm8
Celera	7	25,232,827 - 25,242,063 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	18.95	NCBI

Rbm42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	95,026,050 - 95,036,020 (-)	NCBI		GRCr8
mRatBN7.2	1	85,898,618 - 85,908,569 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,898,625 - 85,908,573 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	91,314,846 - 91,324,699 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,781,017 - 99,790,871 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	93,073,133 - 93,082,985 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	89,099,296 - 89,109,248 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,099,277 - 89,109,230 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,254,914 - 90,264,857 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,692,754 - 85,702,684 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	85,770,869 - 85,780,753 (-)	NCBI
Celera	1	80,270,333 - 80,280,263 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Rbm42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	4,844,747 - 4,854,504 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	4,844,780 - 4,854,261 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBM42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	41,625,564 - 41,634,271 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	43,609,051 - 43,617,721 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	32,559,215 - 32,567,899 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,295,079 - 41,303,817 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,294,818 - 41,303,817 (+)	Ensembl	panpan1.1		panPan2

Rbm42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	10,960,493 - 10,969,107 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	676,537 - 685,419 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	676,775 - 685,415 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	45,074,540 - 45,083,239 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	45,074,527 - 45,083,124 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,531,490 - 40,540,418 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	30,539,718 - 30,548,412 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	30,539,721 - 30,548,414 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	8,335,012 - 8,343,699 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	7,991,462 - 8,000,804 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	7,991,685 - 8,000,314 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in RBM42
52 total Variants

Assembly: CanFam3.1

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
1	116981606	116981607	G	C	snv	Basenji (BJ001), Basenji (BJ006), Basenji (BJ005), Basenji (BJ004)	View more Information

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	20	20	15	6	6	6	5	30	19	11	13	9


RefSeq Transcripts	XM_005616703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038529312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038529313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038529314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038593570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038593571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038593572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038657423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038657424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038657425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_848603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_862738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00845003632 ⟹ ENSCAFP00845002884

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,172 - 117,589,068 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003656 ⟹ ENSCAFP00845002905

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,376 - 117,589,060 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003678 ⟹ ENSCAFP00845002923

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,379 - 117,589,073 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003686 ⟹ ENSCAFP00845002930

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,379 - 117,589,073 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003695 ⟹ ENSCAFP00845002937

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,384 - 117,589,073 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845003720 ⟹ ENSCAFP00845002956

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	117,581,511 - 117,589,068 (-)	Ensembl

RefSeq Acc Id:

XM_005616703 ⟹ XP_005616760

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,065 (-)	NCBI

Sequence:

show sequence

AACGTCAATCGCGGGCGCCCACCCCGACAAGACCAGAGAGTAGACAGCGGAACTGGCGGAGGCAGCTGAGCTGAGGCGGCAGTAGCGGCGACAGCGACGGCTGCAGCGATGGCCGGGGCGGGGCCAGC
CCCGGGACTCCCGGGTGCAGGAGGACCTGTGGTCCCGGGCGCCGGCATGCCGGGCAAGAGCGGGGAGGAACGCCTGAAGGAGATGGAGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTC
CGGTAACCGGCATCCCTACTGCTGTGCCTGCGGTGCCCACGGTCCCCACGGTGGAAGCGATGCAGGTCCCGGCAGCTCCTGTGATCCGCCCAATTATCGCAACCAACACTTACCAGCAGGTCCAACAG
ACTCTGGAGGCCCGAGCAGCTGCTGCAGCCACAGTGGTTCCTCCGATGGTGGGTGGCCCTCCTTTTGTGGGTCCAGTTGGCTTTGGCCCTGGTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGA
AGCTATGTTCCTGCGTCGAGCAGCTGTAGCCCCCCAGAGGGCCCCTATCCTGCGTCCGGCCTTCGTCCCCCACGTGCTACAGAGAGCAGCAGGTGGTCCTCGCCCTATGGCCCTGCGGCCCCCTCACC
AGGCCCTCGTGGGCCCCCCTCTTCCTGGCCCCCCTGGACCACCTATGATGCTGCCACCAATGGCTCGGGCCCCAGGGCCCCCCCTGGGCTCCATGGCTGCTCTGAGACCTCCCCTGGAAGAGCCAGCA
ACACCTCGAGAGCTGGGGCTGGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGCAGTGGTGGCTGCAGCAGCCGGGCTGGAAGAGGCTAGCGCAGCAGTGGCTGTTGGGGCAGGAGGTGCCCCCAC
CGGCCCTGCCGTCATTGGTCCCAGCCTGCCGTTGGCCCTGGCCATGCCTTTGCCTGAGCCTGAGCCCCTGCCTCTACCGCTGGAAGTTGTACGAGGCCTACTGCCCCCACTGCGCATTCCTGAGCTCC
TGTCCCTGCGTCCACGACCCCGGCCCCCACGGCCTGAGCCACCCCCTGGCCTCATGGCTCTTGAGGTCCCAGAGCCCTTGGGTGAGGACAAGAAGAAAGGAAAGCCAGAGAAATTGAAACGCTGCATT
CGCACAGCAGCTGGGAGCAGCTGGGAGGACCCCAGTCTGCTAGAGTGGGATGCAGATGACTTCCGGATCTTCTGTGGGGACTTGGGCAATGAAGTGAATGATGACATCTTGGCACGAGCCTTCAGCCG
CTTCCCATCCTTCCTTAAGGCTAAGGTGATCCGAGACAAGCGCACGGGCAAGACCAAGGGCTATGGCTTTGTCAGCTTTAAGGATCCCAGCGACTACGTGCGCGCCATGCGTGAGATGAATGGGAAGT
ATGTGGGCTCGCGCCCCATCAAGCTGCGCAAGAGTATGTGGAAGGACCGGAACCTGGACGTGGTACGCAAGAAGCAGAAGGAGAAGAAGAAACTGGGCCTGAGATAGGGTCTGTGGCCGGGCACCCGC
TCCCTCCTGGCCGGGCGCTGGCTCTTCTCCCCGTTCTCTTTGGAAGATCCTCAAAAATCCACTCACCACCTCCCCAAAACCAGTTTCAATAAATTTACGTTATTTCTGTCCCTG

hide sequence

RefSeq Acc Id:

XM_038468539 ⟹ XP_038324467

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	117,144,359 - 117,152,077 (-)	NCBI

RefSeq Acc Id:

XM_038468540 ⟹ XP_038324468

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	117,144,359 - 117,152,078 (-)	NCBI

RefSeq Acc Id:

XM_038468541 ⟹ XP_038324469

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	117,144,359 - 117,152,077 (-)	NCBI

RefSeq Acc Id:

XM_038529312 ⟹ XP_038385240

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,896 (-)	NCBI

RefSeq Acc Id:

XM_038529313 ⟹ XP_038385241

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,897 (-)	NCBI

RefSeq Acc Id:

XM_038529314 ⟹ XP_038385242

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	117,824,179 - 117,831,896 (-)	NCBI

RefSeq Acc Id:

XM_038593570 ⟹ XP_038449498

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,986 (-)	NCBI

RefSeq Acc Id:

XM_038593571 ⟹ XP_038449499

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,987 (-)	NCBI

RefSeq Acc Id:

XM_038593572 ⟹ XP_038449500

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	116,768,265 - 116,775,986 (-)	NCBI

RefSeq Acc Id:

XM_038657423 ⟹ XP_038513351

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	117,581,376 - 117,589,097 (-)	NCBI

RefSeq Acc Id:

XM_038657424 ⟹ XP_038513352

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	117,581,376 - 117,589,098 (-)	NCBI

RefSeq Acc Id:

XM_038657425 ⟹ XP_038513353

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	117,581,376 - 117,589,097 (-)	NCBI

RefSeq Acc Id:

XM_848603 ⟹ XP_853696

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,064 (-)	NCBI

Sequence:

show sequence

AACGTCAATCGCGGGCGCCCACCCCGACAAGACCAGAGAGTAGACAGCGGAACTGGCGGAGGCAGCTGAGCTGAGGCGGCAGTAGCGGCGACAGCGACGGCTGCAGCGATGGCCGGGGCGGGGCCAGC
CCCGGGACTCCCGGGTGCAGGAGGACCTGTGGTCCCGGGCGCCGGCATGCCGGGCAAGAGCGGGGAGGAACGCCTGAAGGAGATGGAGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTC
CGGTAACCGGCATCCCTACTGCTGTGCCTGCGGTGCCCACGGTCCCCACGGTGGAAGCGATGCAGGTCCCGGCAGCTCCTGTGATCCGCCCAATTATCGCAACCAACACTTACCAGCAGGTCCAACAG
ACTCTGGAGGCCCGAGCAGCTGCTGCAGCCACAGTGGTTCCTCCGATGGTGGGTGGCCCTCCTTTTGTGGGTCCAGTTGGCTTTGGCCCTGGTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGA
AGCTATGTTCCTGCGTCGAGCAGCTGTAGCCCCCCAGAGGGCCCCTATCCTGCGTCCGGCCTTCGTCCCCCACGTGCTACAGAGAGCAGATTCTGCTCTTTCTTCTGCAGCAGGTGGTCCTCGCCCTA
TGGCCCTGCGGCCCCCTCACCAGGCCCTCGTGGGCCCCCCTCTTCCTGGCCCCCCTGGACCACCTATGATGCTGCCACCAATGGCTCGGGCCCCAGGGCCCCCCCTGGGCTCCATGGCTGCTCTGAGA
CCTCCCCTGGAAGAGCCAGCAACACCTCGAGAGCTGGGGCTGGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGCAGTGGTGGCTGCAGCAGCCGGGCTGGAAGAGGCTAGCGCAGCAGTGGCTGT
TGGGGCAGGAGGTGCCCCCACCGGCCCTGCCGTCATTGGTCCCAGCCTGCCGTTGGCCCTGGCCATGCCTTTGCCTGAGCCTGAGCCCCTGCCTCTACCGCTGGAAGTTGTACGAGGCCTACTGCCCC
CACTGCGCATTCCTGAGCTCCTGTCCCTGCGTCCACGACCCCGGCCCCCACGGCCTGAGCCACCCCCTGGCCTCATGGCTCTTGAGGTCCCAGAGCCCTTGGGTGAGGACAAGAAGAAAGGAAAGCCA
GAGAAATTGAAACGCTGCATTCGCACAGCAGCTGGGAGCAGCTGGGAGGACCCCAGTCTGCTAGAGTGGGATGCAGATGACTTCCGGATCTTCTGTGGGGACTTGGGCAATGAAGTGAATGATGACAT
CTTGGCACGAGCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCTAAGGTGATCCGAGACAAGCGCACGGGCAAGACCAAGGGCTATGGCTTTGTCAGCTTTAAGGATCCCAGCGACTACGTGCGCGCCA
TGCGTGAGATGAATGGGAAGTATGTGGGCTCGCGCCCCATCAAGCTGCGCAAGAGTATGTGGAAGGACCGGAACCTGGACGTGGTACGCAAGAAGCAGAAGGAGAAGAAGAAACTGGGCCTGAGATAG
GGTCTGTGGCCGGGCACCCGCTCCCTCCTGGCCGGGCGCTGGCTCTTCTCCCCGTTCTCTTTGGAAGATCCTCAAAAATCCACTCACCACCTCCCCAAAACCAGTTTCAATAAATTTACGTTATTTCT
GTCCCTG

hide sequence

RefSeq Acc Id:

XM_862738 ⟹ XP_867831

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	116,978,132 - 116,985,845 (-)	NCBI
Dog10K_Boxer_Tasha	1	116,383,343 - 116,391,064 (-)	NCBI

Sequence:

show sequence

AACGTCAATCGCGGGCGCCCACCCCGACAAGACCAGAGAGTAGACAGCGGAACTGGCGGAGGCA
GCTGAGCTGAGGCGGCAGTAGCGGCGACAGCGACGGCTGCAGCGATGGCCGGGGCGGGGCCAGCCCCGGGACTCCCGGGTGCAGGAGGACCTGTGGTCCCGGGCGCCGGCATGCCGGGCAAGAGCGGG
GAGGAACGCCTGAAGGAGATGGAGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTCCGGTAACCGGCATCCCTACTGCTGTGCCTGCGGTGCCCACGGTCCCCACGGTGGAAGCGATGCA
GGTCCCGGCAGCTCCTGTGATCCGCCCAATTATCGCAACCAACACTTACCAGCAGGTCCAACAGACTCTGGAGGCCCGAGCAGCTGCTGCAGCCACAGTGGTTCCTCCGATGGTGGGTGGCCCTCCTT
TTGTGGGTCCAGTTGGCTTTGGCCCTGGTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGAAGCTATGTTCCTGCGTCGAGCAGCAGGTGGTCCTCGCCCTATGGCCCTGCGGCCCCCTCACCAG
GCCCTCGTGGGCCCCCCTCTTCCTGGCCCCCCTGGACCACCTATGATGCTGCCACCAATGGCTCGGGCCCCAGGGCCCCCCCTGGGCTCCATGGCTGCTCTGAGACCTCCCCTGGAAGAGCCAGCAAC
ACCTCGAGAGCTGGGGCTGGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGCAGTGGTGGCTGCAGCAGCCGGGCTGGAAGAGGCTAGCGCAGCAGTGGCTGTTGGGGCAGGAGGTGCCCCCACCG
GCCCTGCCGTCATTGGTCCCAGCCTGCCGTTGGCCCTGGCCATGCCTTTGCCTGAGCCTGAGCCCCTGCCTCTACCGCTGGAAGTTGTACGAGGCCTACTGCCCCCACTGCGCATTCCTGAGCTCCTG
TCCCTGCGTCCACGACCCCGGCCCCCACGGCCTGAGCCACCCCCTGGCCTCATGGCTCTTGAGGTCCCAGAGCCCTTGGGTGAGGACAAGAAGAAAGGAAAGCCAGAGAAATTGAAACGCTGCATTCG
CACAGCAGCTGGGAGCAGCTGGGAGGACCCCAGTCTGCTAGAGTGGGATGCAGATGACTTCCGGATCTTCTGTGGGGACTTGGGCAATGAAGTGAATGATGACATCTTGGCACGAGCCTTCAGCCGCT
TCCCATCCTTCCTTAAGGCTAAGGTGATCCGAGACAAGCGCACGGGCAAGACCAAGGGCTATGGCTTTGTCAGCTTTAAGGATCCCAGCGACTACGTGCGCGCCATGCGTGAGATGAATGGGAAGTAT
GTGGGCTCGCGCCCCATCAAGCTGCGCAAGAGTATGTGGAAGGACCGGAACCTGGACGTGGTACGCAAGAAGCAGAAGGAGAAGAAGAAACTGGGCCTGAGATAGGGTCTGTGGCCGGGCACCCGCTC
CCTCCTGGCCGGGCGCTGGCTCTTCTCCCCGTTCTCTTTGGAAGATCCTCAAAAATCCACTCACCACCTCCCCAAAACCAGTTTCAATAAATTTACGTTATTTCTGTCCCTG

hide sequence


Protein RefSeqs	XP_005616760	(Get FASTA)	NCBI Sequence Viewer
	XP_038324467	(Get FASTA)	NCBI Sequence Viewer
	XP_038324468	(Get FASTA)	NCBI Sequence Viewer
	XP_038324469	(Get FASTA)	NCBI Sequence Viewer
	XP_038385240	(Get FASTA)	NCBI Sequence Viewer
	XP_038385241	(Get FASTA)	NCBI Sequence Viewer
	XP_038385242	(Get FASTA)	NCBI Sequence Viewer
	XP_038449498	(Get FASTA)	NCBI Sequence Viewer
	XP_038449499	(Get FASTA)	NCBI Sequence Viewer
	XP_038449500	(Get FASTA)	NCBI Sequence Viewer
	XP_038513351	(Get FASTA)	NCBI Sequence Viewer
	XP_038513352	(Get FASTA)	NCBI Sequence Viewer
	XP_038513353	(Get FASTA)	NCBI Sequence Viewer
	XP_853696	(Get FASTA)	NCBI Sequence Viewer
	XP_867831	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000010297.4
	ENSCAFP00000046028.1
	ENSCAFP00000049516.2
	ENSCAFP00000051256.1
	ENSCAFP00000064176.1
	ENSCAFP00000072562.1
	ENSCAFP00030009018.1
	ENSCAFP00030009068.1
	ENSCAFP00030009100.1
	ENSCAFP00030009145.1
	ENSCAFP00030009155.1
	ENSCAFP00030009178.1
	ENSCAFP00040000656.1
	ENSCAFP00040000679.1
	ENSCAFP00040000703.1
	ENSCAFP00040000729.1
	ENSCAFP00040000739.1
	ENSCAFP00040000752.1
	ENSCAFP00845002884.1
	ENSCAFP00845002905
	ENSCAFP00845002905.1
	ENSCAFP00845002923.1
	ENSCAFP00845002930.1
	ENSCAFP00845002937
	ENSCAFP00845002937.1
	ENSCAFP00845002956.1

RefSeq Acc Id:	XP_867831 ⟸ XM_862738
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0PSH5 (UniProtKB/TrEMBL), A0A8I3MF64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAGPAPGLPGAGGPVVPGAGMPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHL DSPEAREAMFLRRAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPATPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPTGPAVIGPSLPLALAM PLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRT GKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR hide sequence

RefSeq Acc Id:	XP_005616760 ⟸ XM_005616703
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0PSH5 (UniProtKB/TrEMBL), A0A8I3MF64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAGPAPGLPGAGGPVVPGAGMPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTV PTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRAAGGPRPMALRPPHQALVGPPLPGPPGPP MMLPPMARAPGPPLGSMAALRPPLEEPATPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPTGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPP PGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK DRNLDVVRKKQKEKKKLGLR hide sequence

RefSeq Acc Id:	XP_853696 ⟸ XM_848603
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0MH84 (UniProtKB/TrEMBL), A0A8I3MK86 (UniProtKB/TrEMBL), A0A8C0MB08 (UniProtKB/TrEMBL), A0A8I3MN86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAGPAPGLPGAGGPVVPGAGMPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTV PTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAGGPRPMALRPPHQALVGPPL PGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPATPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPTGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPR PPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK LRKSMWKDRNLDVVRKKQKEKKKLGLR hide sequence

RefSeq Acc Id:	XP_038324468 ⟸ XM_038468540
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038324469 ⟸ XM_038468541
- Peptide Label:	isoform X3

Protein Domains

RRM

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000006916	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030005620	UniProtKB/TrEMBL
	ENSCAFG00040000448	UniProtKB/TrEMBL
	ENSCAFG00845002092	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000011116.5	UniProtKB/TrEMBL
	ENSCAFT00000060831.2	UniProtKB/TrEMBL
	ENSCAFT00000060984.2	UniProtKB/TrEMBL
	ENSCAFT00000067486.2	UniProtKB/TrEMBL
	ENSCAFT00000088285.2	UniProtKB/TrEMBL
	ENSCAFT00000105472.1	UniProtKB/TrEMBL
	ENSCAFT00030010293.1	UniProtKB/TrEMBL
	ENSCAFT00030010359.1	UniProtKB/TrEMBL
	ENSCAFT00030010391.1	UniProtKB/TrEMBL
	ENSCAFT00030010439.1	UniProtKB/TrEMBL
	ENSCAFT00030010451.1	UniProtKB/TrEMBL
	ENSCAFT00030010482.1	UniProtKB/TrEMBL
	ENSCAFT00040000777.1	UniProtKB/TrEMBL
	ENSCAFT00040000803.1	UniProtKB/TrEMBL
	ENSCAFT00040000828.1	UniProtKB/TrEMBL
	ENSCAFT00040000862.1	UniProtKB/TrEMBL
	ENSCAFT00040000872.1	UniProtKB/TrEMBL
	ENSCAFT00040000888.1	UniProtKB/TrEMBL
	ENSCAFT00845003632.1	UniProtKB/TrEMBL
	ENSCAFT00845003656	ENTREZGENE
	ENSCAFT00845003656.1	UniProtKB/TrEMBL
	ENSCAFT00845003678.1	UniProtKB/TrEMBL
	ENSCAFT00845003686.1	UniProtKB/TrEMBL
	ENSCAFT00845003695	ENTREZGENE
	ENSCAFT00845003695.1	UniProtKB/TrEMBL
	ENSCAFT00845003720.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM42_RRM	UniProtKB/TrEMBL
	RRM-Poly(A)_Binding	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	RBM42	ENTREZGENE
PANTHER	RNA-BINDING PROTEIN 42	UniProtKB/TrEMBL
	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8C0MB08	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0MGU5_CANLF	UniProtKB/TrEMBL
	A0A8C0MH84	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PSH5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RDF7_CANLF	UniProtKB/TrEMBL
	A0A8C0RUJ4_CANLF	UniProtKB/TrEMBL
	A0A8I3MF64	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MK86	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MKS9_CANLF	UniProtKB/TrEMBL
	A0A8I3MN86	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MNE8_CANLF	UniProtKB/TrEMBL
	A0A8I3MRT5_CANLF	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar