Il15ra (interleukin 15 receptor subunit alpha) - Rat Genome Database

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Gene: Il15ra (interleukin 15 receptor subunit alpha) Rattus norvegicus
Analyze
Symbol: Il15ra
Name: interleukin 15 receptor subunit alpha
RGD ID: 1305149
Description: Predicted to enable interleukin-15 receptor activity and protein kinase binding activity. Involved in cell surface receptor signaling pathway via JAK-STAT; negative regulation of neuron projection development; and response to nutrient levels. Predicted to be located in several cellular components, including cell surface; cytoplasmic vesicle; and cytosol. Orthologous to human IL15RA (interleukin 15 receptor subunit alpha); PARTICIPATES IN Jak-Stat signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: interleukin 15 receptor alpha chain; interleukin 15 receptor, alpha; interleukin 15 receptor, alpha chain; interleukin-15 receptor alpha chain; interleukin-15 receptor subunit alpha; LOC364775; LOC502145; LOC690369; similar to Interleukin-15 receptor alpha chain precursor (IL-15R-alpha) (IL-15RA)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,712,141 - 71,742,072 (-)NCBIGRCr8
mRatBN7.21766,802,300 - 66,831,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,802,334 - 66,832,278 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01770,451,861 - 70,481,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,451,411 - 70,481,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01772,155,863 - 72,185,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41777,998,621 - 78,029,657 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11778,009,453 - 78,026,168 (-)NCBI
Celera1766,307,417 - 66,337,085 (-)NCBICelera
Cytogenetic Map17q12.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Il15raRathepatocellular carcinoma disease_progressionISOIL15RA (Homo sapiens)153344586mRNA:increased expression:liver (human)RGD 
Il15raRatHuman Influenza  ISOIl15ra (Mus musculus)4994196 RGD 
Il15raRatPneumococcal Pneumonia  ISOIl15ra (Mus musculus)5000755 RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Il15raRathypoparathyroidism-deafness-renal disease syndrome  ISOIL15RA (Homo sapiens)8554872ClinVar Annotator: match by term: Hypoparathyroidism more ...ClinVarPMID:25741868
Il15raRatimmunodeficiency 41  ISOIL15RA (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency due to CD25 deficiencyClinVarPMID:28492532
Il15raRatschizophrenia  ISOIL15RA (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311

1 to 20 of 83 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Il15raRat(1->4)-beta-D-glucan multiple interactionsISOIl15ra (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of IL15RA mRNACTDPMID:36331819
Il15raRat1,2-dichloroethane decreases expressionISOIl15ra (Mus musculus)6480464ethylene dichloride results in decreased expression of IL15RA mRNACTDPMID:28960355
Il15raRat1-fluoro-2,4-dinitrobenzene increases response to substanceISOIl15ra (Mus musculus)6480464IL15RA protein results in increased susceptibility to DinitrofluorobenzeneCTDPMID:15719370
Il15raRat17alpha-ethynylestradiol multiple interactionsISOIl15ra (Mus musculus)6480464Ethinyl Estradiol inhibits the reaction [IL1B protein results in increased expression of IL15RA mRNA]CTDPMID:12072388
Il15raRat17beta-estradiol increases expressionISOIL15RA (Homo sapiens)6480464Estradiol results in increased expression of IL15RA mRNACTDPMID:24758408 and PMID:31614463
Il15raRat17beta-estradiol decreases expressionISOIl15ra (Mus musculus)6480464Estradiol results in decreased expression of IL15RA mRNACTDPMID:39298647
Il15raRat17beta-estradiol multiple interactionsISOIL15RA (Homo sapiens)6480464[Progesterone co-treated with Estradiol] results in increased expression of IL15RA mRNA and EGF protein promotes the reaction [Estradiol results in increased expression of IL15RA mRNA]CTDPMID:18692832 and PMID:24758408
Il15raRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOIl15ra (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of IL15RA mRNACTDPMID:21570461
Il15raRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of IL15RA mRNACTDPMID:34747641
Il15raRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOIl15ra (Mus musculus)6480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of IL15RA mRNACTDPMID:25975270
Il15raRat3',5'-cyclic AMP multiple interactionsISOIl15ra (Mus musculus)6480464[Metformin co-treated with Cyclic AMP] results in decreased expression of IL15RA mRNA and PPARGC1A mutant form inhibits the reaction [Cyclic AMP results in decreased expression of IL15RA mRNA]CTDPMID:22117073
Il15raRat3',5'-cyclic AMP decreases expressionISOIl15ra (Mus musculus)6480464Cyclic AMP results in decreased expression of IL15RA mRNACTDPMID:22117073
Il15raRat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of IL15RA mRNACTDPMID:36041667
Il15raRat4,4'-sulfonyldiphenol decreases methylationISOIL15RA (Homo sapiens)6480464bisphenol S results in decreased methylation of IL15RA geneCTDPMID:38338858
Il15raRat4-hydroxyphenyl retinamide increases expressionISOIl15ra (Mus musculus)6480464Fenretinide results in increased expression of IL15RA mRNACTDPMID:28973697
Il15raRataflatoxin B1 increases expressionISOIl15ra (Mus musculus)6480464Aflatoxin B1 results in increased expression of IL15RA mRNACTDPMID:19770486
Il15raRatantirheumatic drug decreases expressionISOIL15RA (Homo sapiens)6480464Antirheumatic Agents results in decreased expression of IL15RA mRNACTDPMID:24449571
Il15raRatarsane affects methylationISOIL15RA (Homo sapiens)6480464Arsenic affects the methylation of IL15RA geneCTDPMID:25304211
Il15raRatarsenic atom affects methylationISOIL15RA (Homo sapiens)6480464Arsenic affects the methylation of IL15RA geneCTDPMID:25304211
Il15raRatatrazine affects methylationEXP 6480464Atrazine affects the methylation of IL15RA geneCTDPMID:28931070

1 to 20 of 83 rows

Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Il15raRatcell surface receptor signaling pathway via JAK-STAT  IMP 5001122 RGD 
Il15raRatinterleukin-15-mediated signaling pathway involved_inISOIL15RA (Homo sapiens)1624291 PMID:15123770RGDPMID:15123770
Il15raRatinterleukin-15-mediated signaling pathway involved_inIEAUniProtKB:Q13261 and ensembl:ENSP000003693121600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatinterleukin-15-mediated signaling pathway involved_inIEAInterPro:IPR0423721600115GO_REF:0000002InterProGO_REF:0000002
Il15raRatinterleukin-15-mediated signaling pathway involved_inIBAPANTHER:PTN002688085 and UniProtKB:Q132611600115GO_REF:0000033GO_CentralGO_REF:0000033
Il15raRatnatural killer cell differentiation acts_upstream_ofISOIl15ra (Mus musculus)1624291MGI:1934016 PMID:14607906RGDPMID:14607906
Il15raRatnatural killer cell differentiation acts_upstream_ofIEAUniProtKB:Q60819 and ensembl:ENSMUSP000000778781600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatnegative regulation of neuron projection development  IMP 5001122 RGD 
Il15raRatpositive regulation of natural killer cell differentiation acts_upstream_of_or_withinISOIl15ra (Mus musculus)1624291MGI:1934016 PMID:14607906RGDPMID:14607906
Il15raRatpositive regulation of natural killer cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q60819 and ensembl:ENSMUSP000000778781600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatpositive regulation of phagocytosis involved_inISOIL15RA (Homo sapiens)1624291 PMID:15123770RGDPMID:15123770
Il15raRatpositive regulation of phagocytosis involved_inIEAUniProtKB:Q13261 and ensembl:ENSP000003693121600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatresponse to nutrient levels  IEP 5013833 RGD 
1 to 13 of 13 rows

Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Il15raRatcell surface located_inISOIL15RA (Homo sapiens)1624291 PMID:15123770RGDPMID:15123770
Il15raRatcell surface located_inIEAUniProtKB:Q13261 and ensembl:ENSP000003693121600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatcytoplasmic vesicle located_inISOIl15ra (Mus musculus)1624291 PMID:20374432RGDPMID:20374432
Il15raRatcytoplasmic vesicle located_inIEAUniProtKB:Q60819 and ensembl:ENSMUSP000000778781600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatcytosol located_inISOIL15RA (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Il15raRatcytosol located_inIEAUniProtKB:Q13261 and ensembl:ENSP000003693121600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatintracellular membrane-bounded organelle located_inISOIL15RA (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Il15raRatintracellular membrane-bounded organelle located_inIEAUniProtKB:Q13261 and ensembl:ENSP000003693121600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Il15raRatplasma membrane located_inIEAUniProtKB:Q13261 and ensembl:ENSP000003693121600115GO_REF:0000107EnsemblGO_REF:0000107
Il15raRatplasma membrane located_inISOIL15RA (Homo sapiens) more ...1624291 RGDGO_REF:0000052
1 to 11 of 11 rows

Molecular Function

  

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Il15raRatJak-Stat signaling pathway   IMP 5001122 RGD 

1 to 10 of 10 rows
#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Cell-specific interleukin-15 and interleukin-15 receptor subunit expression and regulation in pneumococcal pneumonia--comparison to chlamydial lung infection. Hocke AC, etal., Cytokine. 2007 May;38(2):61-73. Epub 2007 Jul 3.
4. Effects of interleukin-15 on neuronal differentiation of neural stem cells. Huang YS, etal., Brain Res. 2009 Dec 22;1304:38-48. Epub 2009 Sep 10.
5. Changes in IL-15 expression and death-receptor apoptotic signaling in rat gastrocnemius muscle with aging and life-long calorie restriction. Marzetti E, etal., Mech Ageing Dev. 2009 Apr;130(4):272-80.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. A role for IL-15 in the migration of effector CD8 T cells to the lung airways following influenza infection. Verbist KC, etal., J Immunol. 2011 Jan 1;186(1):174-82. Epub 2010 Nov 22.
10. Comprehensive Molecular Analyses of a Macrophage-Related Gene Signature With Regard to Prognosis, Immune Features, and Biomarkers for Immunotherapy in Hepatocellular Carcinoma Based on WGCNA and the LASSO Algorithm. Wang T, etal., Front Immunol. 2022 May 27;13:843408. doi: 10.3389/fimmu.2022.843408. eCollection 2022.
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PMID:14607906   PMID:15123770   PMID:15632090   PMID:17135303   PMID:20374432  



Il15ra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,712,141 - 71,742,072 (-)NCBIGRCr8
mRatBN7.21766,802,300 - 66,831,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,802,334 - 66,832,278 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01770,451,861 - 70,481,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,451,411 - 70,481,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01772,155,863 - 72,185,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41777,998,621 - 78,029,657 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11778,009,453 - 78,026,168 (-)NCBI
Celera1766,307,417 - 66,337,085 (-)NCBICelera
Cytogenetic Map17q12.2NCBI
IL15RA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38105,948,900 - 5,978,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl105,943,639 - 5,978,187 (-)EnsemblGRCh38hg38GRCh38
GRCh37105,994,334 - 6,020,704 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36106,034,340 - 6,060,148 (-)NCBINCBI36Build 36hg18NCBI36
Build 34106,034,339 - 6,060,148NCBI
Celera105,924,720 - 5,950,524 (-)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef105,921,146 - 5,946,954 (-)NCBIHuRef
CHM1_1105,994,318 - 6,020,126 (-)NCBICHM1_1
T2T-CHM13v2.0105,949,580 - 5,979,435 (-)NCBIT2T-CHM13v2.0
Il15ra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39211,709,992 - 11,739,129 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl211,710,101 - 11,739,128 (+)EnsemblGRCm39 Ensembl
GRCm38211,705,172 - 11,733,985 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl211,705,290 - 11,734,317 (+)EnsemblGRCm38mm10GRCm38
MGSCv37211,627,163 - 11,655,589 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36211,623,389 - 11,651,815 (+)NCBIMGSCv36mm8
Celera211,623,120 - 11,651,603 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map28.97NCBI
Il15ra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542122,586,012 - 22,620,788 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542122,590,168 - 22,612,835 (-)NCBIChiLan1.0ChiLan1.0
IL15RA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,505,994 - 18,533,693 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,511,317 - 18,537,670 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0105,993,583 - 6,019,967 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1105,977,496 - 6,003,530 (-)NCBIpanpan1.1PanPan1.1panPan2
IL15RA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1229,981,385 - 30,034,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl229,981,234 - 30,038,945 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha227,011,951 - 27,063,544 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0230,362,521 - 30,414,141 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1227,453,074 - 27,510,965 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,295,696 - 28,347,242 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0229,013,739 - 29,065,573 (+)NCBIUU_Cfam_GSD_1.0
Il15ra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934432,424,567 - 32,458,379 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364848,590,482 - 8,623,469 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364848,590,945 - 8,623,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL15RA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11065,022,227 - 65,054,385 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21071,094,399 - 71,125,894 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL15RA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.196,061,475 - 6,096,370 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl96,061,197 - 6,096,250 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605111,364,722 - 11,399,250 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il15ra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624775847,677 - 877,604 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624775846,063 - 877,894 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Il15ra
184 total Variants


Assembly: mRatBN7.2
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
17 66803014 66803015 C T snv PVG/Seac (2019) View more Information


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
17 72156577 72156578 C T snv GH/OmrMcwi (MCW) View more Information


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
17 70452575 70452576 C T snv PVG/Seac (2019), GH/OmrMcwi (MCW) View more Information

Predicted Target Of
Summary Value
Count of predictions:203
Count of miRNA genes:75
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000025252, ENSRNOT00000050998, ENSRNOT00000058221, ENSRNOT00000073691
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat

1 to 10 of 44 rows
BE102654  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21766,808,612 - 66,808,788 (+)MAPPERmRatBN7.2
Rnor_6.01770,458,171 - 70,458,346NCBIRnor6.0
Rnor_5.01772,162,173 - 72,162,348UniSTSRnor5.0
RGSC_v3.41778,004,649 - 78,004,824UniSTSRGSC3.4
Celera1766,313,721 - 66,313,896UniSTS
RH 3.4 Map17637.4UniSTS
Cytogenetic Map17q12.3UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 105 91 90 59 25 59 6 218 97 85 45 60 31



Ensembl Acc Id: ENSRNOT00000025252   ⟹   ENSRNOP00000025252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,802,334 - 66,832,278 (-)Ensembl
Rnor_6.0 Ensembl1770,451,411 - 70,481,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102319   ⟹   ENSRNOP00000079978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,802,334 - 66,831,717 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113114   ⟹   ENSRNOP00000081543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,802,334 - 66,831,717 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114539   ⟹   ENSRNOP00000094566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,802,334 - 66,831,717 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115316   ⟹   ENSRNOP00000091230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,802,334 - 66,831,717 (-)Ensembl
RefSeq Acc Id: NM_001100801   ⟹   NP_001094271
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,712,141 - 71,741,653 (-)NCBI
RefSeq Acc Id: XM_006254225   ⟹   XP_006254287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,712,141 - 71,741,808 (-)NCBI
mRatBN7.21766,802,300 - 66,831,971 (-)NCBI
Rnor_6.01770,451,861 - 70,481,835 (-)NCBI
Rnor_5.01772,155,863 - 72,185,368 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063276765   ⟹   XP_063132835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,712,141 - 71,741,811 (-)NCBI
RefSeq Acc Id: XM_063276766   ⟹   XP_063132836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,712,141 - 71,741,811 (-)NCBI
RefSeq Acc Id: XM_063276767   ⟹   XP_063132837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,712,141 - 71,742,072 (-)NCBI
1 to 5 of 10 rows
1 to 5 of 10 rows
RefSeq Acc Id: XP_006254287   ⟸   XM_006254225
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ADB7 (UniProtKB/TrEMBL),   A0A8I6G839 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025252   ⟸   ENSRNOT00000025252
Ensembl Acc Id: ENSRNOP00000079978   ⟸   ENSRNOT00000102319
Ensembl Acc Id: ENSRNOP00000091230   ⟸   ENSRNOT00000115316
Ensembl Acc Id: ENSRNOP00000094566   ⟸   ENSRNOT00000114539
Sushi

Name Modeler Protein Id AA Range Protein Structure
AF-F1M293-F1-model_v2 AlphaFold F1M293 1-251 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700559
Promoter ID:EPDNEW_R11079
Type:initiation region
Name:Il15ra_1
Description:interleukin 15 receptor subunit alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01770,481,745 - 70,481,805EPDNEW


1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-8801 BioCyc
Ensembl Genes ENSRNOG00000018706 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025252.9 UniProtKB/TrEMBL
  ENSRNOT00000102319.1 UniProtKB/TrEMBL
  ENSRNOT00000113114 ENTREZGENE
  ENSRNOT00000113114.1 UniProtKB/TrEMBL
  ENSRNOT00000114539 ENTREZGENE
  ENSRNOT00000114539.1 UniProtKB/TrEMBL
  ENSRNOT00000115316.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.28.230 UniProtKB/TrEMBL
InterPro IL15RA UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP UniProtKB/TrEMBL
NCBI Gene Il15ra ENTREZGENE
PANTHER INTERLEUKIN-15 RECEPTOR SUBUNIT ALPHA UniProtKB/TrEMBL
  PTHR15060 UniProtKB/TrEMBL
Pfam Sushi UniProtKB/TrEMBL
PhenoGen Il15ra PhenoGen
PROSITE SUSHI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018706 RatGTEx
SMART CCP UniProtKB/TrEMBL
Superfamily-SCOP Complement_control_module UniProtKB/TrEMBL
UniProt A0A8I5ZP92_RAT UniProtKB/TrEMBL
  A0A8I6ADB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AI14 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G839 ENTREZGENE, UniProtKB/TrEMBL
  A6JLR7 ENTREZGENE, UniProtKB/TrEMBL
  A6JLR8 ENTREZGENE, UniProtKB/TrEMBL
  F1M293 ENTREZGENE, UniProtKB/TrEMBL
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-16 Il15ra  interleukin 15 receptor subunit alpha  Il15ra  interleukin 15 receptor, alpha  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-28 Il15ra  interleukin 15 receptor, alpha chain  LOC690369  similar to Interleukin-15 receptor alpha chain precursor (IL-15R-alpha) (IL-15RA)  Data merged from RGD:1597321 737654 APPROVED
2011-07-28 Il15ra  interleukin 15 receptor, alpha  Il15ra  interleukin 15 receptor, alpha chain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-27 Il15ra  interleukin 15 receptor, alpha chain  LOC502145  interleukin-15 receptor alpha chain  Data merged from RGD:1594361 737654 APPROVED
2008-04-30 Il15ra  interleukin 15 receptor, alpha chain   Il15ra_predicted  interleukin 15 receptor, alpha chain (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC690369  similar to Interleukin-15 receptor alpha chain precursor (IL-15R-alpha) (IL-15RA)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC502145  interleukin-15 receptor alpha chain      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Il15ra_predicted  interleukin 15 receptor, alpha chain (predicted)      Symbol and Name status set to approved 70820 APPROVED