IL15RA (interleukin 15 receptor subunit alpha) - Rat Genome Database

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Gene: IL15RA (interleukin 15 receptor subunit alpha) Sus scrofa
Analyze
Symbol: IL15RA
Name: interleukin 15 receptor subunit alpha
RGD ID: 14249314
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); natural killer cell differentiation (ortholog); negative regulation of neuron projection development (ortholog); PARTICIPATES IN Jak-Stat signaling pathway; ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); Human Influenza (ortholog); FOUND IN cell surface (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin 15 receptor alpha; interleukin-15 receptor subunit alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11065,022,227 - 65,054,385 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21071,094,399 - 71,125,894 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
IL15RA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11065,022,227 - 65,054,385 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21071,094,399 - 71,125,894 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL15RA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38105,948,900 - 5,978,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl105,943,639 - 5,978,187 (-)EnsemblGRCh38hg38GRCh38
GRCh37105,994,334 - 6,020,704 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36106,034,340 - 6,060,148 (-)NCBINCBI36Build 36hg18NCBI36
Build 34106,034,339 - 6,060,148NCBI
Celera105,924,720 - 5,950,524 (-)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef105,921,146 - 5,946,954 (-)NCBIHuRef
CHM1_1105,994,318 - 6,020,126 (-)NCBICHM1_1
T2T-CHM13v2.0105,949,580 - 5,979,435 (-)NCBIT2T-CHM13v2.0
Il15ra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39211,709,992 - 11,739,129 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl211,710,101 - 11,739,128 (+)EnsemblGRCm39 Ensembl
GRCm38211,705,172 - 11,733,985 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl211,705,290 - 11,734,317 (+)EnsemblGRCm38mm10GRCm38
MGSCv37211,627,163 - 11,655,589 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36211,623,389 - 11,651,815 (+)NCBIMGSCv36mm8
Celera211,623,120 - 11,651,603 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map28.97NCBI
Il15ra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,712,141 - 71,742,072 (-)NCBIGRCr8
mRatBN7.21766,802,300 - 66,831,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,802,334 - 66,832,278 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01770,451,861 - 70,481,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,451,411 - 70,481,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01772,155,863 - 72,185,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41777,998,621 - 78,029,657 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11778,009,453 - 78,026,168 (-)NCBI
Celera1766,307,417 - 66,337,085 (-)NCBICelera
Cytogenetic Map17q12.2NCBI
Il15ra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542122,586,012 - 22,620,788 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542122,590,168 - 22,612,835 (-)NCBIChiLan1.0ChiLan1.0
IL15RA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,505,994 - 18,533,693 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,511,317 - 18,537,670 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0105,993,583 - 6,019,967 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1105,977,496 - 6,003,530 (-)NCBIpanpan1.1PanPan1.1panPan2
IL15RA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1229,981,385 - 30,034,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl229,981,234 - 30,038,945 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha227,011,951 - 27,063,544 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0230,362,521 - 30,414,141 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1227,453,074 - 27,510,965 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,295,696 - 28,347,242 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0229,013,739 - 29,065,573 (+)NCBIUU_Cfam_GSD_1.0
Il15ra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934432,424,567 - 32,458,379 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364848,590,482 - 8,623,469 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364848,590,945 - 8,623,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL15RA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.196,061,475 - 6,096,370 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl96,061,197 - 6,096,250 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605111,364,722 - 11,399,250 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il15ra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624775847,677 - 877,604 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624775846,063 - 877,894 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IL15RA
1406 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 9 2 2 5 2 8 2 3
Below cutoff 2 1 13 1 1

Sequence


RefSeq Acc Id: XM_003357781   ⟹   XP_003357829
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,022,228 - 65,054,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065032   ⟹   XP_020920691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,022,227 - 65,054,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065033   ⟹   XP_020920692
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,022,227 - 65,054,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065034   ⟹   XP_020920693
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,022,227 - 65,054,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065035   ⟹   XP_020920694
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,022,227 - 65,054,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065036   ⟹   XP_020920695
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,022,227 - 65,054,385 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020920691   ⟸   XM_021065032
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020920693   ⟸   XM_021065034
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020920692   ⟸   XM_021065033
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020920694   ⟸   XM_021065035
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020920695   ⟸   XM_021065036
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_003357829   ⟸   XM_003357781
- Peptide Label: isoform X2
- Sequence:
Protein Domains
Sushi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021815 ENTREZGENE
  ENSSSCG00030064562 UniProtKB/TrEMBL
  ENSSSCG00035042333 UniProtKB/TrEMBL
  ENSSSCG00055003189 UniProtKB/TrEMBL
  ENSSSCG00070006883 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000032534 ENTREZGENE
  ENSSSCT00030090230.1 UniProtKB/TrEMBL
  ENSSSCT00035056263.1 UniProtKB/TrEMBL
  ENSSSCT00055006163.1 UniProtKB/TrEMBL
  ENSSSCT00070013190.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.28.230 UniProtKB/TrEMBL
InterPro IL15RA UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
KEGG Report ssc:733692 UniProtKB/TrEMBL
NCBI Gene IL15RA ENTREZGENE
PANTHER INTERLEUKIN-15 RECEPTOR SUBUNIT ALPHA UniProtKB/TrEMBL
  PTHR15060 UniProtKB/TrEMBL
Pfam Sushi UniProtKB/TrEMBL
PROSITE SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
Superfamily-SCOP SSF57535 UniProtKB/TrEMBL
UniProt A0A4X1T6U0_PIG UniProtKB/TrEMBL
  Q0ZHI0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:107146 ENTREZGENE