Symbol:
Atat1
Name:
alpha tubulin acetyltransferase 1
RGD ID:
1303066
Description:
Predicted to enable L-lysine N-acetyltransferase activity, acting on acetyl phosphate as donor and tubulin N-acetyltransferase activity. Predicted to be involved in several processes, including alpha-tubulin acetylation; response to mechanical stimulus; and response to pain. Predicted to act upstream of or within several processes, including dentate gyrus development; positive regulation of NLRP3 inflammasome complex assembly; and regulation of fat cell differentiation. Predicted to be located in Golgi apparatus; cytoskeleton; and cytosol. Predicted to be active in membrane. Orthologous to human ATAT1 (alpha tubulin acetyltransferase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; alpha-Zearalanol.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
3110080J08Rik; acetyltransferase MEC-17; acetyltransferase mec-17 homolog; alpha-TAT; alpha-TAT1; alpha-tubulin N-acetyltransferase; alpha-tubulin N-acetyltransferase 1; FLJ13158; hypothetical protein FLJ13158; hypothetical protein LOC361789; Mec17; RGD1303066; similar to RIKEN cDNA 2610110G12; TAT
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 20 2,849,399 - 2,862,614 (+) NCBI GRCr8 mRatBN7.2 20 2,844,595 - 2,857,809 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 20 2,844,616 - 2,861,964 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 20 2,896,411 - 2,909,351 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 20 2,901,381 - 2,914,321 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 20 2,927,539 - 2,940,490 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 20 3,351,269 - 3,364,565 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 20 3,351,303 - 3,364,565 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 20 5,448,793 - 5,462,088 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 20 2,992,405 - 3,005,364 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 20 2,992,631 - 3,005,583 (+) NCBI Celera 20 270,616 - 283,574 (+) NCBI Celera Cytogenetic Map 20 p12 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Atat1 Rat (1->4)-beta-D-glucan multiple interactions ISO RGD:1552512 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of ATAT1 mRNA CTD PMID:36331819 Atat1 Rat 1,2-dimethylhydrazine increases expression ISO RGD:1552512 6480464 1,2-Dimethylhydrazine results in increased expression of ATAT1 mRNA CTD PMID:22206623 Atat1 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression EXP 6480464 Tetrachlorodibenzodioxin affects the expression of ATAT1 mRNA CTD PMID:22298810 Atat1 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of ATAT1 mRNA CTD PMID:33387578 Atat1 Rat 4,4'-sulfonyldiphenol decreases expression ISO RGD:1552512 6480464 bisphenol S results in decreased expression of ATAT1 mRNA CTD PMID:39298647 Atat1 Rat 4-hydroxyphenyl retinamide increases expression ISO RGD:1552512 6480464 Fenretinide results in increased expression of ATAT1 mRNA CTD PMID:28973697 Atat1 Rat 6-propyl-2-thiouracil increases expression EXP 6480464 Propylthiouracil results in increased expression of ATAT1 mRNA CTD PMID:24780913 Atat1 Rat alpha-Zearalanol multiple interactions EXP 6480464 [Zeranol co-treated with perfluorooctanoic acid] results in increased expression of ATAT1 mRNA CTD PMID:35163327 Atat1 Rat antirheumatic drug increases expression ISO RGD:1347627 6480464 Antirheumatic Agents results in increased expression of ATAT1 mRNA CTD PMID:24449571 Atat1 Rat benzo[a]pyrene affects methylation ISO RGD:1347627 6480464 Benzo(a)pyrene affects the methylation of ATAT1 promoter CTD PMID:27901495 Atat1 Rat beta-lapachone increases expression ISO RGD:1347627 6480464 beta-lapachone results in increased expression of ATAT1 mRNA CTD PMID:38218311 Atat1 Rat bisphenol A increases expression ISO RGD:1347627 6480464 bisphenol A results in increased expression of ATAT1 mRNA CTD PMID:25047013 Atat1 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of ATAT1 mRNA CTD PMID:38750585 Atat1 Rat bisphenol A decreases expression ISO RGD:1552512 6480464 bisphenol A results in decreased expression of ATAT1 mRNA CTD PMID:32156529 Atat1 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of ATAT1 protein CTD PMID:32145629 Atat1 Rat bisphenol A affects expression EXP 6480464 bisphenol A affects the expression of ATAT1 mRNA CTD PMID:25181051 Atat1 Rat butanal decreases expression ISO RGD:1347627 6480464 butyraldehyde results in decreased expression of ATAT1 mRNA CTD PMID:26079696 Atat1 Rat cadmium atom increases expression ISO RGD:1347627 6480464 Cadmium results in increased expression of ATAT1 mRNA CTD PMID:24376830 Atat1 Rat cadmium atom multiple interactions ISO RGD:1552512 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of ATAT1 more ... CTD PMID:37325564 Atat1 Rat cadmium atom multiple interactions ISO RGD:1347627 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of ATAT1 more ... CTD PMID:35301059 Atat1 Rat cadmium dichloride decreases methylation EXP 6480464 Cadmium Chloride results in decreased methylation of ATAT1 promoter CTD PMID:22457795 Atat1 Rat cadmium dichloride multiple interactions ISO RGD:1552512 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of ATAT1 more ... CTD PMID:37325564 Atat1 Rat cadmium dichloride multiple interactions ISO RGD:1347627 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of ATAT1 more ... CTD PMID:35301059 Atat1 Rat cannabidiol decreases expression ISO RGD:1347627 6480464 Cannabidiol results in decreased expression of ATAT1 mRNA CTD PMID:27932991 Atat1 Rat carbon nanotube decreases expression ISO RGD:1552512 6480464 Nanotubes, Carbon analog results in decreased expression of ATAT1 mRNA; Nanotubes, Carbon results in decreased more ... CTD PMID:25620056 Atat1 Rat chlorpyrifos increases expression ISO RGD:1552512 6480464 Chlorpyrifos results in increased expression of ATAT1 mRNA CTD PMID:37019170 Atat1 Rat cisplatin multiple interactions ISO RGD:1347627 6480464 [Cisplatin co-treated with jinfukang] results in increased expression of ATAT1 mRNA CTD PMID:27392435 Atat1 Rat cisplatin increases expression ISO RGD:1347627 6480464 Cisplatin results in increased expression of ATAT1 mRNA CTD PMID:27392435 Atat1 Rat cobalt dichloride decreases expression EXP 6480464 cobaltous chloride results in decreased expression of ATAT1 mRNA CTD PMID:24386269 Atat1 Rat crocidolite asbestos increases expression ISO RGD:1552512 6480464 Asbestos, Crocidolite results in increased expression of ATAT1 mRNA CTD PMID:19446018 Atat1 Rat dibutyl phthalate increases expression EXP 6480464 Dibutyl Phthalate results in increased expression of ATAT1 mRNA CTD PMID:21266533 Atat1 Rat dicrotophos increases expression ISO RGD:1347627 6480464 dicrotophos results in increased expression of ATAT1 mRNA CTD PMID:28302478 Atat1 Rat dorsomorphin multiple interactions ISO RGD:1347627 6480464 [NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Atat1 Rat doxorubicin decreases expression ISO RGD:1347627 6480464 Doxorubicin results in decreased expression of ATAT1 mRNA CTD PMID:29803840 Atat1 Rat ethanol affects splicing ISO RGD:1552512 6480464 Ethanol affects the splicing of ATAT1 mRNA CTD PMID:30319688 Atat1 Rat leflunomide decreases expression ISO RGD:1347627 6480464 leflunomide results in decreased expression of ATAT1 mRNA CTD PMID:28988120 Atat1 Rat nickel atom multiple interactions EXP 6480464 [nickel sulfate results in increased abundance of Nickel] which results in decreased expression of ATAT1 more ... CTD PMID:31734292 Atat1 Rat nickel sulfate multiple interactions EXP 6480464 [nickel sulfate results in increased abundance of Nickel] which results in decreased expression of ATAT1 more ... CTD PMID:31734292 Atat1 Rat paracetamol decreases expression EXP 6480464 Acetaminophen results in decreased expression of ATAT1 mRNA CTD PMID:33387578 Atat1 Rat pentanal decreases expression ISO RGD:1347627 6480464 pentanal results in decreased expression of ATAT1 mRNA CTD PMID:26079696 Atat1 Rat perfluorooctane-1-sulfonic acid multiple interactions ISO RGD:1552512 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of ATAT1 mRNA CTD PMID:36331819 Atat1 Rat perfluorooctanoic acid multiple interactions EXP 6480464 [Zeranol co-treated with perfluorooctanoic acid] results in increased expression of ATAT1 mRNA CTD PMID:35163327 Atat1 Rat pirinixic acid increases expression ISO RGD:1552512 6480464 pirinixic acid results in increased expression of ATAT1 mRNA CTD PMID:23811191 Atat1 Rat pregnenolone 16alpha-carbonitrile decreases expression ISO RGD:1552512 6480464 Pregnenolone Carbonitrile results in decreased expression of ATAT1 mRNA CTD PMID:28903501 Atat1 Rat SB 431542 multiple interactions ISO RGD:1347627 6480464 [LDN 193189 co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in increased expression of ATAT1 more ... CTD PMID:27188386|PMID:37664457 Atat1 Rat sodium arsenite decreases expression ISO RGD:1347627 6480464 sodium arsenite results in decreased expression of ATAT1 mRNA CTD PMID:34032870 Atat1 Rat sunitinib decreases expression ISO RGD:1347627 6480464 Sunitinib results in decreased expression of ATAT1 mRNA CTD PMID:31533062 Atat1 Rat trichloroethene decreases expression EXP 6480464 Trichloroethylene results in decreased expression of ATAT1 mRNA CTD PMID:33387578 Atat1 Rat valproic acid decreases expression ISO RGD:1347627 6480464 Valproic Acid results in decreased expression of ATAT1 mRNA CTD PMID:23179753|PMID:24935251|PMID:26272509 Atat1 Rat valproic acid multiple interactions ISO RGD:1347627 6480464 [NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Atat1 Rat vinclozolin increases expression EXP 6480464 vinclozolin results in increased expression of ATAT1 mRNA CTD PMID:23034163 Atat1 Rat vorinostat decreases expression ISO RGD:1347627 6480464 vorinostat results in decreased expression of ATAT1 mRNA CTD PMID:27188386
Biological Process
alpha-tubulin acetylation (ISO,ISS) dentate gyrus development (IEA,ISO) microtubule cytoskeleton organization (IBA,IEA,ISO) neuron development (IEA) NLRP3 inflammasome complex assembly (IEA,ISO) positive regulation of NLRP3 inflammasome complex assembly (IEA,ISO) regulation of fat cell differentiation (IEA,ISO) regulation of microtubule cytoskeleton organization (IEA) response to mechanical stimulus (IEA,ISO) response to pain (IEA,ISO) spermatogenesis (IEA,ISO)
Atat1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 20 2,849,399 - 2,862,614 (+) NCBI GRCr8 mRatBN7.2 20 2,844,595 - 2,857,809 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 20 2,844,616 - 2,861,964 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 20 2,896,411 - 2,909,351 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 20 2,901,381 - 2,914,321 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 20 2,927,539 - 2,940,490 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 20 3,351,269 - 3,364,565 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 20 3,351,303 - 3,364,565 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 20 5,448,793 - 5,462,088 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 20 2,992,405 - 3,005,364 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 20 2,992,631 - 3,005,583 (+) NCBI Celera 20 270,616 - 283,574 (+) NCBI Celera Cytogenetic Map 20 p12 NCBI
ATAT1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 30,626,874 - 30,646,821 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 30,626,842 - 30,646,823 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 30,594,651 - 30,614,598 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 30,702,632 - 30,722,577 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 6 30,702,631 - 30,720,425 NCBI Celera 6 32,192,731 - 32,212,715 (+) NCBI Celera Cytogenetic Map 6 p21.33 NCBI HuRef 6 30,394,781 - 30,414,765 (+) NCBI HuRef CHM1_1 6 30,596,723 - 30,616,706 (+) NCBI CHM1_1 T2T-CHM13v2.0 6 30,491,055 - 30,511,001 (+) NCBI T2T-CHM13v2.0
Atat1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 17 36,208,487 - 36,220,971 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 17 36,208,487 - 36,220,967 (-) Ensembl GRCm39 Ensembl GRCm38 17 35,897,595 - 35,910,086 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 17 35,897,595 - 35,910,075 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 17 36,034,540 - 36,047,013 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 17 35,507,905 - 35,518,098 (-) NCBI MGSCv36 mm8 Celera 17 39,406,855 - 39,419,330 (-) NCBI Celera Cytogenetic Map 17 B1 NCBI cM Map 17 18.75 NCBI
Atat1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 NW_004955583 643,575 - 652,393 (+) NCBI ChiLan1.0 ChiLan1.0
ATAT1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 5 45,184,291 - 45,207,174 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 6 41,147,482 - 41,170,398 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 6 30,368,847 - 30,391,595 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 6 31,238,771 - 31,261,795 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 6 31,238,778 - 31,261,611 (+) Ensembl panpan1.1 panPan2
ATAT1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 12 441,847 - 456,349 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 12 441,895 - 456,152 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 12 579,489 - 593,991 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 12 586,158 - 599,574 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 12 586,171 - 599,379 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 12 442,543 - 457,251 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 12 511,819 - 526,707 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 12 581,863 - 595,374 (+) NCBI UU_Cfam_GSD_1.0
Atat1
ATAT1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 7 23,173,438 - 23,185,451 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 7 23,173,138 - 23,185,463 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 7 26,895,036 - 26,907,375 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
ATAT1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 17 41,807,405 - 41,830,670 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 17 41,807,291 - 41,830,000 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666044 30,320,597 - 30,343,906 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Atat1
.
Predicted Target Of
Count of predictions: 22 Count of miRNA genes: 22 Interacting mature miRNAs: 22 Transcripts: ENSRNOT00000001065 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
61472 Aia1 Adjuvant induced arthritis QTL 1 18 0.001 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 20 2646395 4597031 Rat 2306850 Pia40 Pristane induced arthritis QTL 40 0.0001 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 20 1527959 5304575 Rat 1641915 Colcr9 Colorectal carcinoma resistance QTL 9 2.97 0.0024 intestine integrity trait (VT:0010554) benign colorectal tumor number (CMO:0001795) 20 1530655 46530655 Rat 7387283 Uae44 Urinary albumin excretion QTL 44 0.1712 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 20 1 26123605 Rat 7411668 Foco32 Food consumption QTL 32 8 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 20 1 36600972 Rat 2305926 Iddm37 Insulin dependent diabetes mellitus QTL 37 6 blood glucose amount (VT:0000188) plasma glucose level (CMO:0000042) 20 1527842 46527842 Rat 1354642 Despr15 Despair related QTL 15 0.0027 locomotor behavior trait (VT:0001392) amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) 20 1 24159021 Rat 1600382 Edcs3 Endometrial carcinoma susceptibility QTL3 3.5 0.003 uterus morphology trait (VT:0001120) percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) 20 1 25159026 Rat 61448 Ciaa1 CIA Autoantibody QTL 1 30 0.001 blood autoantibody amount (VT:0003725) calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) 20 2646395 4597031 Rat 8694189 Bw153 Body weight QTL 153 3.13 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 20 1 29191651 Rat 724519 Bp144 Blood pressure QTL 144 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 20 1 3624629 Rat 9590109 Sffal8 Serum free fatty acids level QTL 8 5.32 0.01 blood free fatty acid amount (VT:0001553) plasma free fatty acids level (CMO:0000546) 20 1 29191651 Rat 9590275 Scort15 Serum corticosterone level QTL 15 3.48 0.001 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 20 1 29191651 Rat 9589155 Insul32 Insulin level QTL 32 6.38 0.001 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 20 1 29191651 Rat 7411650 Foco23 Food consumption QTL 23 20.7 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 20 1 29191651 Rat 2317851 Alcrsp22 Alcohol response QTL 22 3.2 0.05 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 20 1 27339237 Rat 1598816 Memor12 Memory QTL 12 2.4 exploratory behavior trait (VT:0010471) average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) 20 2606836 47606836 Rat 1641893 Alcrsp7 Alcohol response QTL 7 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 20 1 27339237 Rat 6893685 Bw111 Body weight QTL 111 2.7 0.004 body mass (VT:0001259) body weight (CMO:0000012) 20 1 32578807 Rat 9590252 Scort12 Serum corticosterone level QTL 12 20.46 0.001 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 20 1 36600972 Rat
BE117058
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 20 2,855,567 - 2,855,717 (+) MAPPER mRatBN7.2 Rnor_6.0 20 3,362,236 - 3,362,385 NCBI Rnor6.0 Rnor_5.0 20 5,459,759 - 5,459,908 UniSTS Rnor5.0 RGSC_v3.4 20 3,003,338 - 3,003,487 UniSTS RGSC3.4 Celera 20 281,548 - 281,697 UniSTS RH 3.4 Map 5 1157.1 UniSTS Cytogenetic Map 20 p12 UniSTS
RH128043
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 20 2,843,981 - 2,844,162 (+) MAPPER mRatBN7.2 Rnor_6.0 20 3,350,651 - 3,350,831 NCBI Rnor6.0 Rnor_5.0 20 5,448,174 - 5,448,354 UniSTS Rnor5.0 RGSC_v3.4 20 2,991,753 - 2,991,933 UniSTS RGSC3.4 Celera 20 269,964 - 270,144 UniSTS RH 3.4 Map 20 15.8 UniSTS Cytogenetic Map 20 p12 UniSTS
AI548047
Rat Assembly Chr Position (strand) Source JBrowse GRCr8 20 2,862,169 - 2,862,332 (+) Marker Load Pipeline mRatBN7.2 20 2,857,364 - 2,857,528 (+) MAPPER mRatBN7.2 Rnor_6.0 20 3,364,336 - 3,364,499 NCBI Rnor6.0 Rnor_5.0 20 5,461,859 - 5,462,022 UniSTS Rnor5.0 RGSC_v3.4 20 3,005,135 - 3,005,298 UniSTS RGSC3.4 Celera 20 283,345 - 283,508 UniSTS RH 3.4 Map 20 52.1 UniSTS Cytogenetic Map 20 p12 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000001065 ⟹ ENSRNOP00000001065
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 20 2,844,616 - 2,857,574 (+) Ensembl Rnor_6.0 Ensembl 20 3,351,303 - 3,364,565 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000001077 ⟹ ENSRNOP00000001077
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 20 2,844,616 - 2,861,964 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000078758
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,359,963 - 3,360,423 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000079253
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,351,317 - 3,359,172 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000079654 ⟹ ENSRNOP00000073934
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 20 2,844,622 - 2,857,577 (+) Ensembl Rnor_6.0 Ensembl 20 3,363,737 - 3,364,564 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000079738
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,351,899 - 3,360,095 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000080158
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 20 2,844,616 - 2,855,719 (+) Ensembl Rnor_6.0 Ensembl 20 3,351,305 - 3,362,430 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000080419 ⟹ ENSRNOP00000074047
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 20 2,844,634 - 2,857,586 (+) Ensembl Rnor_6.0 Ensembl 20 3,351,303 - 3,364,557 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000082342
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,363,639 - 3,364,012 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000082345
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,351,646 - 3,352,710 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000086216
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,360,990 - 3,361,703 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000086503 ⟹ ENSRNOP00000075030
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 20 2,844,634 - 2,857,586 (+) Ensembl Rnor_6.0 Ensembl 20 3,351,304 - 3,364,565 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000087295
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,363,676 - 3,364,565 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000089667
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,351,305 - 3,362,388 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000090225
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,363,852 - 3,364,565 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000091735
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 20 3,351,517 - 3,352,689 (+) Ensembl
RefSeq Acc Id:
NM_212498 ⟹ NP_997663
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,439 - 2,862,398 (+) NCBI mRatBN7.2 20 2,844,634 - 2,857,594 (+) NCBI Rnor_6.0 20 3,351,303 - 3,364,565 (+) NCBI Rnor_5.0 20 5,448,793 - 5,462,088 (+) NCBI RGSC_v3.4 20 2,992,405 - 3,005,364 (+) RGD Celera 20 270,616 - 283,574 (+) RGD
Sequence:
GCACAATGGGCCATGGAGTTCCCGTTCGATGTGGATGCGCTGTTCCCGGAGCGGATCACCGTGCTGGACCAGCACCTGCGGCCTCCGGCCCGCCGACCCGGAACCACAACGCCGGCCCGTGTGGATCT
hide sequence
RefSeq Acc Id:
XM_006255950 ⟹ XP_006256012
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,860,523 (+) NCBI mRatBN7.2 20 2,844,599 - 2,855,750 (+) NCBI Rnor_6.0 20 3,351,270 - 3,362,387 (+) NCBI Rnor_5.0 20 5,448,793 - 5,462,088 (+) NCBI
Sequence:
GGAAGTGACGTTTTGTGGGGCGTGTCCGATCCCGCACAATGGGCCATGGAGTTCCCGTTCGATG
hide sequence
RefSeq Acc Id:
XM_006255951 ⟹ XP_006256013
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,860,523 (+) NCBI mRatBN7.2 20 2,844,599 - 2,855,750 (+) NCBI Rnor_6.0 20 3,351,270 - 3,362,387 (+) NCBI Rnor_5.0 20 5,448,793 - 5,462,088 (+) NCBI
Sequence:
GGAAGTGACGTTTTGTGGGGCGTGTCCGATCCCGCACAATGGGCCATGGAGTTCCCGTTCGATG
hide sequence
RefSeq Acc Id:
XM_039098796 ⟹ XP_038954724
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,862,469 (+) NCBI mRatBN7.2 20 2,844,599 - 2,857,594 (+) NCBI
RefSeq Acc Id:
XM_039098797 ⟹ XP_038954725
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,862,471 (+) NCBI mRatBN7.2 20 2,844,599 - 2,857,579 (+) NCBI
RefSeq Acc Id:
XM_063279200 ⟹ XP_063135270
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,862,469 (+) NCBI
RefSeq Acc Id:
XM_063279201 ⟹ XP_063135271
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,862,468 (+) NCBI
RefSeq Acc Id:
XM_063279202 ⟹ XP_063135272
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,862,614 (+) NCBI
RefSeq Acc Id:
XM_063279203 ⟹ XP_063135273
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,862,613 (+) NCBI
RefSeq Acc Id:
XM_063279204 ⟹ XP_063135274
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,862,469 (+) NCBI
RefSeq Acc Id:
XM_063279205 ⟹ XP_063135275
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,862,471 (+) NCBI
RefSeq Acc Id:
XM_063279206 ⟹ XP_063135276
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,399 - 2,860,523 (+) NCBI
RefSeq Acc Id:
XM_063279207 ⟹ XP_063135277
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 2,849,400 - 2,858,602 (+) NCBI
RefSeq Acc Id:
NP_997663 ⟸ NM_212498
- UniProtKB:
Q6MG11 (UniProtKB/Swiss-Prot), A6KT73 (UniProtKB/TrEMBL), A0A8L2R8C1 (UniProtKB/TrEMBL)
- Sequence:
MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIVDELGKASAKAQHLPAPITSALRMQSNRHVIYVLKDTSARPAGKGAIIGFLKVGYKKLFVLDDREAHNEVEPLCILDFYIHE
hide sequence
RefSeq Acc Id:
XP_006256012 ⟸ XM_006255950
- Peptide Label:
isoform X9
- UniProtKB:
A0A8I6A4A0 (UniProtKB/TrEMBL), A6KT75 (UniProtKB/TrEMBL)
- Sequence:
MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIVDELGKASAKAQHLPAPI
hide sequence
RefSeq Acc Id:
XP_006256013 ⟸ XM_006255951
- Peptide Label:
isoform X10
- Sequence:
MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIVDELGKASAKAQHLPAPI
hide sequence
Ensembl Acc Id:
ENSRNOP00000074047 ⟸ ENSRNOT00000080419
Ensembl Acc Id:
ENSRNOP00000073934 ⟸ ENSRNOT00000079654
Ensembl Acc Id:
ENSRNOP00000075030 ⟸ ENSRNOT00000086503
Ensembl Acc Id:
ENSRNOP00000001065 ⟸ ENSRNOT00000001065
RefSeq Acc Id:
XP_038954724 ⟸ XM_039098796
- Peptide Label:
isoform X1
- UniProtKB:
A6KT74 (UniProtKB/TrEMBL), A0A0G2K9K5 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038954725 ⟸ XM_039098797
- Peptide Label:
isoform X5
- UniProtKB:
A0A0G2K6T3 (UniProtKB/TrEMBL), A0A0G2K9K5 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSRNOP00000001077 ⟸ ENSRNOT00000001077
RefSeq Acc Id:
XP_063135276 ⟸ XM_063279206
- Peptide Label:
isoform X11
RefSeq Acc Id:
XP_063135272 ⟸ XM_063279202
- Peptide Label:
isoform X4
RefSeq Acc Id:
XP_063135273 ⟸ XM_063279203
- Peptide Label:
isoform X6
RefSeq Acc Id:
XP_063135275 ⟸ XM_063279205
- Peptide Label:
isoform X8
RefSeq Acc Id:
XP_063135270 ⟸ XM_063279200
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_063135274 ⟸ XM_063279204
- Peptide Label:
isoform X7
RefSeq Acc Id:
XP_063135271 ⟸ XM_063279201
- Peptide Label:
isoform X3
- UniProtKB:
A0A8L2R8C1 (UniProtKB/TrEMBL), G3V628 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_063135277 ⟸ XM_063279207
- Peptide Label:
isoform X12
- UniProtKB:
A6KT77 (UniProtKB/TrEMBL)
RGD ID: 13701299 Promoter ID: EPDNEW_R11819 Type: multiple initiation site Name: Atat1_1 Description: alpha tubulin acetyltransferase 1 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 20 3,351,291 - 3,351,351 EPDNEW
BioCyc Gene G2FUF-4785 BioCyc
Ensembl Genes ENSRNOG00000000809 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000001065 ENTREZGENE
ENSRNOT00000001077 ENTREZGENE
ENSRNOT00000080158 ENTREZGENE
ENSRNOT00000120553 ENTREZGENE
ENSRNOT00000120554 ENTREZGENE
Gene3D-CATH 3.40.630.30 UniProtKB/Swiss-Prot
6.20.370.120 UniProtKB/Swiss-Prot
InterPro Atat UniProtKB/Swiss-Prot
GNAT_ATAT UniProtKB/Swiss-Prot
KEGG Report rno:361789 UniProtKB/Swiss-Prot
NCBI Gene 361789 ENTREZGENE
PANTHER ALPHA-TUBULIN N-ACETYLTRANSFERASE 1 UniProtKB/Swiss-Prot
PTHR12327 UniProtKB/Swiss-Prot
Pfam Acetyltransf_16 UniProtKB/Swiss-Prot
PhenoGen Atat1 PhenoGen
PROSITE GNAT_ATAT UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000809 RatGTEx
UniProt A0A0G2K6T3 ENTREZGENE, UniProtKB/TrEMBL
A0A0G2K9K5 ENTREZGENE, UniProtKB/TrEMBL
A0A8I6A4A0 ENTREZGENE, UniProtKB/TrEMBL
A0A8L2PZR1_RAT UniProtKB/TrEMBL
A0A8L2R8C1 ENTREZGENE, UniProtKB/TrEMBL
A6KT73 ENTREZGENE, UniProtKB/TrEMBL
A6KT74 ENTREZGENE, UniProtKB/TrEMBL
A6KT75 ENTREZGENE, UniProtKB/TrEMBL
A6KT77 ENTREZGENE, UniProtKB/TrEMBL
ATAT_RAT UniProtKB/Swiss-Prot
G3V628 ENTREZGENE, UniProtKB/TrEMBL
Q6MG11 ENTREZGENE
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2011-05-26
Atat1
alpha tubulin acetyltransferase 1
RGD1303066
similar to RIKEN cDNA 2610110G12
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2005-11-17
RGD1303066
similar to RIKEN cDNA 2610110G12
FLJ13158
hypothetical protein FLJ13158
Symbol and Name updated
1299863 APPROVED
2005-09-30
FLJ13158
Symbol and Name status set to provisional
70820 PROVISIONAL
