Symbol:
Polr2b
Name:
RNA polymerase II subunit B
RGD ID:
9014866
Description:
ENCODES a protein that exhibits chromatin binding (ortholog); DNA-directed RNA polymerase activity (ortholog); RNA-directed RNA polymerase activity (ortholog); INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Tracheoesophageal Fistula (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
DNA-directed RNA polymerase II subunit RPB2; polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955447 14,110,182 - 14,150,556 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955447 14,110,182 - 14,150,556 (-) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Polr2b Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955447 14,110,182 - 14,150,556 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955447 14,110,182 - 14,150,556 (-) NCBI ChiLan1.0 ChiLan1.0
POLR2B Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 4 56,978,896 - 57,031,158 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 4 56,977,722 - 57,031,158 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 4 57,845,062 - 57,897,324 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 4 57,539,866 - 57,592,091 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 4 57,686,036 - 57,738,262 NCBI Celera 4 55,351,060 - 55,402,358 (+) NCBI Celera Cytogenetic Map 4 q12 NCBI HuRef 4 53,798,541 - 53,850,908 (+) NCBI HuRef CHM1_1 4 57,880,501 - 57,933,190 (+) NCBI CHM1_1 T2T-CHM13v2.0 4 60,470,344 - 60,522,595 (+) NCBI T2T-CHM13v2.0
Polr2b Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 5 77,458,331 - 77,497,175 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 5 77,457,994 - 77,497,171 (+) Ensembl GRCm39 Ensembl GRCm38 5 77,310,484 - 77,349,328 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 5 77,310,147 - 77,349,324 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 5 77,739,509 - 77,778,353 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 5 78,385,273 - 78,424,099 (+) NCBI MGSCv36 mm8 Celera 5 74,577,709 - 74,617,045 (+) NCBI Celera Cytogenetic Map 5 C3.3 NCBI cM Map 5 41.66 NCBI
Polr2b Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 14 31,151,534 - 31,189,222 (-) NCBI GRCr8 mRatBN7.2 14 30,797,228 - 30,834,916 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 14 30,797,228 - 30,834,916 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 14 31,178,151 - 31,215,766 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 14 32,486,476 - 32,524,093 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 14 30,971,132 - 31,008,749 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 14 33,070,104 - 33,107,792 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 14 33,070,078 - 33,107,776 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 14 32,863,627 - 32,901,277 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 14 33,069,966 - 33,107,615 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 14 33,069,967 - 33,107,600 (-) NCBI Celera 14 30,116,602 - 30,154,129 (-) NCBI Celera Cytogenetic Map 14 p11 NCBI
POLR2B Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 3 72,744,237 - 72,798,118 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 4 72,949,670 - 73,003,185 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 4 66,888,215 - 66,940,702 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 4 73,462,000 - 73,514,985 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 4 73,462,000 - 73,514,985 (-) Ensembl panpan1.1 panPan2
POLR2B Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 13 49,091,458 - 49,138,413 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 13 49,090,863 - 49,138,487 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 13 48,982,054 - 49,028,661 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 13 49,705,912 - 49,752,974 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 13 49,705,467 - 49,752,975 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 13 49,378,679 - 49,425,490 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 13 48,907,935 - 48,954,761 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 13 49,852,758 - 49,900,240 (+) NCBI UU_Cfam_GSD_1.0
Polr2b Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405285 27,179,024 - 27,225,143 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936482 19,073,124 - 19,119,421 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936482 19,073,125 - 19,119,424 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
POLR2B Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 8 56,231,789 - 56,285,011 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 8 56,232,730 - 56,283,367 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 8 59,014,262 - 59,064,755 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
POLR2B Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 7 11,694,446 - 11,736,215 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 7 11,694,619 - 11,736,611 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666066 12,273,518 - 12,305,507 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Polr2b
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCLAT00000007869 ⟹ ENSCLAP00000007749
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955447 14,110,182 - 14,150,556 (-) Ensembl
Ensembl Acc Id:
ENSCLAT00000007870 ⟹ ENSCLAP00000007750
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955447 14,110,389 - 14,146,511 (-) Ensembl
RefSeq Acc Id:
XM_005392864 ⟹ XP_005392921
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955447 14,110,182 - 14,150,556 (-) NCBI
Sequence:
GGCGCGGCGCGGAGGATTCTGGGAGCGCCGGGGGAGGAAATTGCCGCACTCTCTCCGGGACAGGGGGTTCGCTGCGCTTTTGGGTGATTTCGGGAATTAGGAGCCCCGGCGCCCGTTGCCAAGATGTA
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RefSeq Acc Id:
XM_013518517 ⟹ XP_013373971
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955447 14,110,182 - 14,150,556 (-) NCBI
Sequence:
GGCGCGGCGCGGAGGATTCTGGGAGCGCCGGGGGAGGAAATTGCCGCACTCTCTCCGGGACAGG
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RefSeq Acc Id:
XP_005392921 ⟸ XM_005392864
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2UYS4 (UniProtKB/TrEMBL), A0A8C2UZD4 (UniProtKB/TrEMBL)
- Sequence:
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDI
hide sequence
RefSeq Acc Id:
XP_013373971 ⟸ XM_013518517
- Peptide Label:
isoform X2
- UniProtKB:
A0A8C2UZD4 (UniProtKB/TrEMBL)
- Sequence:
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPP
hide sequence
Ensembl Acc Id:
ENSCLAP00000007749 ⟸ ENSCLAT00000007869
Ensembl Acc Id:
ENSCLAP00000007750 ⟸ ENSCLAT00000007870
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2016-07-26
Polr2b
RNA polymerase II subunit B
polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
Symbol and/or name change
5135510 APPROVED
