Mdh1 (malate dehydrogenase 1) - Rat Genome Database

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Gene: Mdh1 (malate dehydrogenase 1) Chinchilla lanigera
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Symbol: Mdh1
Name: malate dehydrogenase 1
RGD ID: 8992554
Description: ENCODES a protein that exhibits L-malate dehydrogenase (NAD+) activity (ortholog); malate dehydrogenase activity (ortholog); NAD binding (ortholog); INVOLVED IN malate metabolic process (ortholog); malate-aspartate shuttle (ortholog); NAD+ metabolic process (ortholog); PARTICIPATES IN Leigh disease pathway; nicotinamide adenine dinucleotide metabolic pathway; primary hyperoxaluria type 2 pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); adult respiratory distress syndrome (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: malate dehydrogenase 1, NAD (soluble); malate dehydrogenase, cytoplasmic
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542420,706,058 - 20,723,493 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542420,707,765 - 20,723,493 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mdh1ChinchillaLiver Injury treatmentISOMdh1 (Rattus norvegicus)9068941 RGDPMID:24919044 and REF_RGD_ID:13703104
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mdh1ChinchillaBardet-Biedl syndrome  ISOMDH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Bardet-Biedl syndromeClinVarPMID:28492532
Mdh1Chinchilladevelopmental and epileptic encephalopathy 88  ISOMDH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 88ClinVarPMID:31538237
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mdh1ChinchillaAcute Liver Failure  ISOMDH1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:35172013
Mdh1Chinchillaadult respiratory distress syndrome  ISOMDH1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25070658
Mdh1ChinchillaChemical and Drug Induced Liver Injury  ISOMDH1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:16099942
Mdh1ChinchillaExperimental Liver Cirrhosis  ISOMDH1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Mdh1Chinchillahypertension  ISOMDH1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:22228705
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mdh1Chinchilladevelopmental and epileptic encephalopathy 88  ISOMDH1 (Homo sapiens)7240710 OMIM 


Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mdh1Chinchillacentrosome located_inISOMDH1 (Homo sapiens)9068941 HPAGO_REF:0000052
Mdh1Chinchillacytoplasm located_inISOMDH1 (Homo sapiens)9068941 PMID:34547241ComplexPortalPMID:34547241
Mdh1Chinchillacytosol located_inISOMDH1 (Sus scrofa)9068941 PMID:3312200MGIPMID:3312200
Mdh1Chinchillacytosol is_active_inISOMdh1 (Mus musculus)9068941 PMID:5770240MGIPMID:5770240
Mdh1Chinchillacytosol located_inISOMDH1 (Homo sapiens)9068941 HPAGO_REF:0000052

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mdh1Chinchillanicotinamide adenine dinucleotide metabolic pathway   ISOMDH1 (Homo sapiens)9068941 RGDPMID:16368075 more ...

Imported Annotations - SMPDB


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074   PMID:30032202  



Mdh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542420,706,058 - 20,723,493 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542420,707,765 - 20,723,493 (-)NCBIChiLan1.0ChiLan1.0
MDH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38263,588,963 - 63,607,197 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl263,588,609 - 63,607,197 (+)EnsemblGRCh38hg38GRCh38
GRCh37263,816,097 - 63,834,331 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36263,669,626 - 63,687,832 (+)NCBINCBI36Build 36hg18NCBI36
Build 34263,727,772 - 63,745,979NCBI
Celera263,661,163 - 63,679,336 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef263,556,773 - 63,575,326 (+)NCBIHuRef
CHM1_1263,745,880 - 63,764,431 (+)NCBICHM1_1
T2T-CHM13v2.0263,596,617 - 63,614,818 (+)NCBIT2T-CHM13v2.0
Mdh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,506,692 - 21,521,934 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,506,692 - 21,522,367 (-)EnsemblGRCm39 Ensembl
GRCm381121,556,692 - 21,571,934 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,556,692 - 21,572,367 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,456,695 - 21,471,937 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,456,790 - 21,471,832 (-)NCBIMGSCv36mm8
Celera1123,704,959 - 23,720,201 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.89NCBI
Mdh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81499,831,934 - 99,847,227 (-)NCBIGRCr8
mRatBN7.21495,630,625 - 95,645,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,630,306 - 95,645,925 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,982,791 - 99,997,990 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014101,223,133 - 101,238,332 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01497,696,668 - 97,711,868 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014106,378,349 - 106,393,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,378,942 - 106,393,670 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,449,337 - 106,463,995 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,259,130 - 102,273,788 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,278,343 - 102,292,999 (-)NCBI
Celera1494,639,971 - 94,655,156 (-)NCBICelera
Cytogenetic Map14q22NCBI
MDH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21262,789,858 - 62,808,152 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A62,793,808 - 62,812,102 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A63,658,933 - 63,677,257 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A64,785,132 - 64,803,631 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A64,785,132 - 64,803,631 (+)Ensemblpanpan1.1panPan2
MDH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11063,316,818 - 63,334,556 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1063,316,831 - 63,361,735 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1063,205,783 - 63,223,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01064,325,732 - 64,343,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1064,325,748 - 64,393,190 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11064,008,394 - 64,026,100 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01064,316,618 - 64,334,341 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01064,609,207 - 64,626,872 (+)NCBIUU_Cfam_GSD_1.0
Mdh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629219,984,379 - 20,000,470 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364918,570,472 - 8,587,686 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364918,570,472 - 8,586,914 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl378,244,999 - 78,268,600 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1378,247,229 - 78,263,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2382,274,663 - 82,280,460 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11443,406,502 - 43,425,525 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1443,406,499 - 43,425,095 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604568,435,625 - 68,454,293 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247629,881,950 - 9,901,372 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247629,884,521 - 9,900,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005385722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01024871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01083943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000011465   ⟹   ENSCLAP00000011328
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542420,706,058 - 20,723,493 (-)Ensembl
RefSeq Acc Id: XM_005385722   ⟹   XP_005385779
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542420,707,765 - 20,723,493 (-)NCBI
Sequence:
Protein RefSeqs XP_005385779 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011328
  ENSCLAP00000011328.1
RefSeq Acc Id: XP_005385779   ⟸   XM_005385722
- UniProtKB: A0A8C2YNC5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000011328   ⟸   ENSCLAT00000011465


1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000007815 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011465 ENTREZGENE
  ENSCLAT00000011465.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.110.10 UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro L-lactate/malate_DH UniProtKB/TrEMBL
  Lactate/malate_DH_C UniProtKB/TrEMBL
  Lactate/malate_DH_N UniProtKB/TrEMBL
  Lactate_DH/Glyco_Ohase_4_C UniProtKB/TrEMBL
  Malate_DH_AS UniProtKB/TrEMBL
  Malate_DH_NAD-dep_euk UniProtKB/TrEMBL
  Malate_DH_type2 UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene Mdh1 ENTREZGENE
PANTHER PTHR23382 UniProtKB/TrEMBL
Pfam Ldh_1_C UniProtKB/TrEMBL
  Ldh_1_N UniProtKB/TrEMBL
PIRSF Lac_mal_DH UniProtKB/TrEMBL
PROSITE MDH UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
  SSF56327 UniProtKB/TrEMBL
UniProt A0A8C2YNC5 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Mdh1  malate dehydrogenase 1    malate dehydrogenase 1, NAD (soluble)  Symbol and/or name change 5135510 APPROVED