Akap6 (A-kinase anchoring protein 6) - Rat Genome Database

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Gene: Akap6 (A-kinase anchoring protein 6) Chinchilla lanigera
Analyze
Symbol: Akap6
Name: A-kinase anchoring protein 6
RGD ID: 8972251
Description: ENCODES a protein that exhibits adenylate cyclase binding (ortholog); enzyme binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to cytokine stimulus (ortholog); cellular response to epinephrine stimulus (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH anorexia nervosa (ortholog); atrial fibrillation (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN calcium channel complex (ortholog); caveola (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: A kinase (PRKA) anchor protein 6; A-kinase anchor protein 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540928,077,621 - 28,516,944 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540928,067,814 - 28,516,881 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Akap6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540928,077,621 - 28,516,944 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540928,067,814 - 28,516,881 (-)NCBIChiLan1.0ChiLan1.0
AKAP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381432,329,298 - 32,837,684 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1432,329,298 - 32,837,684 (+)EnsemblGRCh38hg38GRCh38
GRCh371432,798,504 - 33,306,890 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361431,868,274 - 32,372,018 (+)NCBINCBI36Build 36hg18NCBI36
Build 341431,868,273 - 32,372,018NCBI
Celera1412,665,076 - 13,167,767 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1412,916,606 - 13,419,742 (+)NCBIHuRef
CHM1_11432,798,120 - 33,300,973 (+)NCBICHM1_1
T2T-CHM13v2.01426,401,181 - 27,034,449 (+)NCBIT2T-CHM13v2.0
Akap6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,745,371 - 53,202,351 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,746,166 - 53,202,382 (+)EnsemblGRCm39 Ensembl
GRCm381252,698,588 - 53,155,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1252,699,383 - 53,155,599 (+)EnsemblGRCm38mm10GRCm38
MGSCv371253,800,370 - 54,252,002 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361253,620,875 - 54,072,638 (+)NCBIMGSCv36mm8
Celera1254,009,109 - 54,451,716 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1222.18NCBI
Akap6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,919,350 - 76,359,667 (+)NCBIGRCr8
mRatBN7.2670,184,101 - 70,624,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl670,184,175 - 70,619,738 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx670,602,131 - 71,041,292 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0670,908,778 - 71,347,917 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0670,348,346 - 70,787,478 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0673,553,111 - 73,991,992 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl673,553,210 - 73,990,534 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0683,111,409 - 83,547,031 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4673,010,779 - 73,354,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1673,016,484 - 73,357,646 (+)NCBI
Celera669,046,483 - 69,480,156 (+)NCBICelera
Cytogenetic Map6q23NCBI
AKAP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21533,530,973 - 34,155,583 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11432,747,476 - 33,372,086 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01412,978,221 - 13,602,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11431,290,939 - 31,792,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1431,395,026 - 31,792,166 (+)Ensemblpanpan1.1panPan2
AKAP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1811,403,655 - 11,882,684 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl811,406,280 - 11,874,406 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha811,299,751 - 11,679,685 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0811,415,673 - 11,984,846 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl811,508,505 - 11,986,716 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1811,188,259 - 11,668,695 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0811,269,184 - 11,750,344 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0811,547,419 - 12,028,362 (+)NCBIUU_Cfam_GSD_1.0
Akap6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864043,239,054 - 43,722,811 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364946,744,892 - 7,228,686 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364946,744,923 - 7,228,670 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKAP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl766,915,881 - 67,375,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1766,913,541 - 67,462,147 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2771,765,469 - 72,075,989 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Akap6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248383,999,663 - 4,393,055 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248383,992,769 - 4,393,055 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019955   ⟹   ENSCLAP00000019762
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540928,077,621 - 28,516,944 (-)Ensembl
RefSeq Acc Id: XM_005376946   ⟹   XP_005377003
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540928,067,814 - 28,516,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510378   ⟹   XP_013365832
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540928,067,814 - 28,516,881 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377003 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365832 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019762
  ENSCLAP00000019762.1
Reference Protein Sequences
RefSeq Acc Id: XP_005377003   ⟸   XM_005376946
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VW89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365832   ⟸   XM_013510378
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000019762   ⟸   ENSCLAT00000019955


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013553 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019955 ENTREZGENE
  ENSCLAT00000019955.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.60 UniProtKB/TrEMBL
InterPro AKAP6/CEP68 UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
NCBI Gene Akap6 ENTREZGENE
PANTHER A-KINASE ANCHOR PROTEIN 6 UniProtKB/TrEMBL
  PKA ANCHORING PROTEIN UniProtKB/TrEMBL
Pfam Spectrin UniProtKB/TrEMBL
SMART SPEC UniProtKB/TrEMBL
Superfamily-SCOP Spectrin repeat UniProtKB/TrEMBL
UniProt A0A8C2VW89 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Akap6  A-kinase anchoring protein 6    A kinase (PRKA) anchor protein 6  Symbol and/or name change 5135510 APPROVED