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Gene: Rbp2 (retinol binding protein 2) Chinchilla lanigera

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Symbol:

Rbp2

Name:

retinol binding protein 2

RGD ID:

8889416

Description:

ENCODES a protein that exhibits binding (ortholog); lipid binding (ortholog); molecular carrier activity (ortholog); INVOLVED IN retinoid metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

retinol binding protein 2, cellular; retinol-binding protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955508	6,111,168 - 6,136,010 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955508	6,111,558 - 6,135,929 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbp2	Chinchilla	retinoid metabolic process	involved_in	ISO	Rbp2 (Mus musculus)	9068941	PMID:35552670	MGI	PMID:35552670
Rbp2	Chinchilla	retinoid metabolic process	involved_in	ISO	MGI:2672086	9068941	PMID:12138113	MGI	PMID:12138113

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbp2	Chinchilla	cytosol	is_active_in	ISO	Rbp2 (Mus musculus)	9068941	PMID:25992653	MGI	PMID:25992653

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbp2	Chinchilla	binding	enables	ISO	Rbp2 (Mus musculus)	9068941	PMID:32195347	MGI	PMID:32195347
Rbp2	Chinchilla	binding	enables	ISO	MGI:2672086	9068941	PMID:32195347	MGI	PMID:32195347
Rbp2	Chinchilla	lipid binding	enables	ISO	Rbp2 (Mus musculus)	9068941	PMID:32195347	MGI	PMID:32195347
Rbp2	Chinchilla	lipid binding	enables	ISO	MGI:2672086	9068941	PMID:32195347	MGI	PMID:32195347
Rbp2	Chinchilla	molecular carrier activity	enables	ISO	MGI:2672086	9068941	PMID:12138113	MGI	PMID:12138113
Rbp2	Chinchilla	retinol binding		ISO	Rbp2 (Rattus norvegicus)	9068941		RGD	PMID:12850148 more ...

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbp2	Chinchilla	retinol metabolic pathway		ISO	RBP2 (Homo sapiens)	9068941		RGD	PMID:21718801 and REF_RGD_ID:6484679

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:30032202

Rbp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955508	6,111,168 - 6,136,010 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955508	6,111,558 - 6,135,929 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	139,452,884 - 139,476,516 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	139,452,884 - 139,480,747 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	139,171,726 - 139,195,358 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	140,654,416 - 140,678,042 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	140,654,424 - 140,678,050	NCBI
Celera	3	137,594,686 - 137,618,327 (-)	NCBI		Celera
Cytogenetic Map	3	q23	NCBI
HuRef	3	136,547,188 - 136,570,833 (-)	NCBI		HuRef
CHM1_1	3	139,135,301 - 139,158,940 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	142,200,416 - 142,224,059 (-)	NCBI		T2T-CHM13v2.0

Rbp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	98,372,590 - 98,391,824 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	98,368,168 - 98,391,834 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	98,490,537 - 98,509,771 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	98,486,115 - 98,509,781 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	98,390,956 - 98,410,190 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	98,299,905 - 98,319,089 (+)	NCBI		MGSCv36	mm8
Celera	9	98,036,063 - 98,055,300 (+)	NCBI		Celera
Cytogenetic Map	9	E3.3	NCBI
cM Map	9	51.37	NCBI

Rbp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	107,958,670 - 107,983,850 (+)	NCBI		GRCr8
mRatBN7.2	8	99,079,293 - 99,104,489 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	99,079,104 - 99,104,473 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	104,752,605 - 104,772,947 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	102,951,869 - 102,972,216 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	100,794,370 - 100,814,714 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	106,479,253 - 106,527,726 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	106,503,504 - 106,527,711 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	105,945,338 - 105,969,565 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	103,665,461 - 103,685,771 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	103,684,970 - 103,705,027 (+)	NCBI
Celera	8	98,493,627 - 98,513,957 (+)	NCBI		Celera
RH 3.4 Map	8	1052.2	RGD
Cytogenetic Map	8	q31	NCBI

RBP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	137,366,814 - 137,394,504 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	137,369,656 - 137,399,234 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	136,488,536 - 136,513,337 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	144,089,322 - 144,112,840 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	144,089,322 - 144,112,840 (-)	Ensembl	panpan1.1		panPan2

RBP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	35,619,215 - 35,642,249 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	35,619,221 - 35,642,213 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	35,607,084 - 35,630,082 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	36,157,741 - 36,180,747 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	36,157,751 - 36,180,723 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	35,838,270 - 35,861,272 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	35,911,556 - 35,934,581 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	36,153,873 - 36,176,911 (-)	NCBI		UU_Cfam_GSD_1.0

Rbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	74,807,601 - 74,831,624 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936540	1,547,386 - 1,571,430 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936540	1,547,406 - 1,571,374 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	80,320,931 - 80,352,975 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	80,321,024 - 80,346,032 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	87,988,050 - 88,013,085 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	51,077,753 - 51,102,110 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	51,078,169 - 51,102,249 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	24,055,079 - 24,079,140 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	16,016,524 - 16,060,141 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	16,018,142 - 16,060,179 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005407783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01065913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01107672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000004123 ⟹ ENSCLAP00000004042

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955508	6,111,168 - 6,136,010 (+)	Ensembl

RefSeq Acc Id:

XM_005407783 ⟹ XP_005407840

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955508	6,111,558 - 6,135,929 (+)	NCBI

Sequence:

show sequence

CCAAGCTATAAAAGTGGCCCATTTCCATGCGTCAGCTGCCTTTTTAGCATTCACCATACACCCACAGCAAACCAGAGGCTGTCGCCATGACCAGAGACCAGCATGGAACCTGGGAGATGGAGAGTAAT
GACAACTTTGAAGGCTACATGAAGGCTCTGGATATTGATTTTGCCACCCGCAAGATCGCAGTACGGCTGAATCAGACAAAGATCATTGATCAAGATGGTGATAACTTCAAGACAAAGACCCAAAGCAC
ATTCCGCAACTATGATGTGGATTTCACTGTCGGGGTGGAGTTTGATGAATACACAAAGGGCCTGGACAGCCGGCACGTTAAGACGCTGGTCATCTGGGAAGGTGACGTCCTTGTGTGTGTGCAGAAGG
GAGAGAAAGAGAACCGCGGCTGGAGGCAGTGGGTGGAGGGCGACAAACTGTATCTGGAGCTGACCTGTGGTGACCAGGTGTGCCGTCAAGTGTTCAAAAAGAAGTGATGCCAGCATGGGAGGCCTGCA
GAGCATGCGGAGTTCTCTACCAGCCTCCAGAATCGGCATGGGGACCCTCCCACTCCTGACGGCCCCATTAAGGTGCCTGGATGGGTTTTAAACTGAATGAGTGTGTAACAGTGACAGGTATAGTCTTC
CCGCCTTGAAACCTGGCATTAAAAGG

hide sequence


Protein RefSeqs	XP_005407840	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004042
	ENSCLAP00000004042.1

RefSeq Acc Id:	XP_005407840 ⟸ XM_005407783
- UniProtKB:	A0A8C2YJV7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRDQHGTWEMESNDNFEGYMKALDIDFATRKIAVRLNQTKIIDQDGDNFKTKTQSTFRNYDVDFTVGVEFDEYTKGLDSRHVKTLVIWEGDVLVCVQKGEKENRGWRQWVEGDKLYLELTCGDQVCR QVFKKK hide sequence

Ensembl Acc Id:

ENSCLAP00000004042 ⟸ ENSCLAT00000004123

Protein Domains

Cytosolic fatty-acid binding proteins

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000002887	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004123	ENTREZGENE
	ENSCLAT00000004123.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.128.20	UniProtKB/TrEMBL
InterPro	Calycin	UniProtKB/TrEMBL
	Fatty_acid-bd	UniProtKB/TrEMBL
	ILBP	UniProtKB/TrEMBL
	Lipocln_cytosolic_FA-bd_dom	UniProtKB/TrEMBL
NCBI Gene	Rbp2	ENTREZGENE
PANTHER	PTHR11955	UniProtKB/TrEMBL
Pfam	Lipocalin	UniProtKB/TrEMBL
PRINTS	FATTYACIDBP	UniProtKB/TrEMBL
PROSITE	FABP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50814	UniProtKB/TrEMBL
UniProt	A0A8C2YJV7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Rbp2	retinol binding protein 2		retinol binding protein 2, cellular	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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RGD Manual Annotations