Rbp2 (retinol binding protein 2) - Rat Genome Database

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Gene: Rbp2 (retinol binding protein 2) Chinchilla lanigera
Analyze
Symbol: Rbp2
Name: retinol binding protein 2
RGD ID: 8889416
Description: ENCODES a protein that exhibits binding (ortholog); lipid binding (ortholog); retinol binding (ortholog); INVOLVED IN retinoid metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinol binding protein 2, cellular; retinol-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555086,111,168 - 6,136,010 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555086,111,558 - 6,135,929 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555086,111,168 - 6,136,010 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555086,111,558 - 6,135,929 (+)NCBIChiLan1.0ChiLan1.0
RBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383139,452,884 - 139,476,516 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3139,452,884 - 139,480,747 (-)EnsemblGRCh38hg38GRCh38
GRCh373139,171,726 - 139,195,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363140,654,416 - 140,678,042 (-)NCBINCBI36Build 36hg18NCBI36
Build 343140,654,424 - 140,678,050NCBI
Celera3137,594,686 - 137,618,327 (-)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3136,547,188 - 136,570,833 (-)NCBIHuRef
CHM1_13139,135,301 - 139,158,940 (-)NCBICHM1_1
T2T-CHM13v2.03142,200,416 - 142,224,059 (-)NCBIT2T-CHM13v2.0
Rbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,372,590 - 98,391,824 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl998,368,168 - 98,391,834 (+)EnsemblGRCm39 Ensembl
GRCm38998,490,537 - 98,509,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl998,486,115 - 98,509,781 (+)EnsemblGRCm38mm10GRCm38
MGSCv37998,390,956 - 98,410,190 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36998,299,905 - 98,319,089 (+)NCBIMGSCv36mm8
Celera998,036,063 - 98,055,300 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.37NCBI
Rbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88107,958,670 - 107,983,850 (+)NCBIGRCr8
mRatBN7.2899,079,293 - 99,104,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,079,104 - 99,104,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8104,752,605 - 104,772,947 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08102,951,869 - 102,972,216 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08100,794,370 - 100,814,714 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08106,479,253 - 106,527,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8106,503,504 - 106,527,711 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08105,945,338 - 105,969,565 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48103,665,461 - 103,685,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18103,684,970 - 103,705,027 (+)NCBI
Celera898,493,627 - 98,513,957 (+)NCBICelera
RH 3.4 Map81052.2RGD
Cytogenetic Map8q31NCBI
RBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,366,814 - 137,394,504 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13137,369,656 - 137,399,234 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03136,488,536 - 136,513,337 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13144,089,322 - 144,112,840 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3144,089,322 - 144,112,840 (-)Ensemblpanpan1.1panPan2
RBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12335,619,215 - 35,642,249 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2335,619,221 - 35,642,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2335,607,084 - 35,630,082 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02336,157,741 - 36,180,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2336,157,751 - 36,180,723 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12335,838,270 - 35,861,272 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02335,911,556 - 35,934,581 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02336,153,873 - 36,176,911 (-)NCBIUU_Cfam_GSD_1.0
Rbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560274,807,601 - 74,831,624 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365401,547,386 - 1,571,430 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365401,547,406 - 1,571,374 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1380,320,931 - 80,352,975 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11380,321,024 - 80,346,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21387,988,050 - 88,013,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11551,077,753 - 51,102,110 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1551,078,169 - 51,102,249 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604124,055,079 - 24,079,140 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473016,016,524 - 16,060,141 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473016,018,142 - 16,060,179 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000004123   ⟹   ENSCLAP00000004042
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555086,111,168 - 6,136,010 (+)Ensembl
RefSeq Acc Id: XM_005407783   ⟹   XP_005407840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555086,111,558 - 6,135,929 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407840 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004042
  ENSCLAP00000004042.1
RefSeq Acc Id: XP_005407840   ⟸   XM_005407783
- UniProtKB: A0A8C2YJV7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000004042   ⟸   ENSCLAT00000004123
Protein Domains
Cytosolic fatty-acid binding proteins


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002887 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004123 ENTREZGENE
  ENSCLAT00000004123.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  ILBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
NCBI Gene Rbp2 ENTREZGENE
PANTHER PTHR11955 UniProtKB/TrEMBL
  RETINOL-BINDING PROTEIN 2 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/TrEMBL
PROSITE FABP UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt A0A8C2YJV7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Rbp2  retinol binding protein 2    retinol binding protein 2, cellular  Symbol and/or name change 5135510 APPROVED