Rbp2 (retinol binding protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rbp2 (retinol binding protein 2) Ictidomys tridecemlineatus
Analyze
Symbol: Rbp2
Name: retinol binding protein 2
RGD ID: 12476500
Description: ENCODES a protein that exhibits binding (ortholog); retinol binding (ortholog); INVOLVED IN retinoid metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinol-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560274,807,601 - 74,831,624 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365401,547,386 - 1,571,430 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365401,547,406 - 1,571,374 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560274,807,601 - 74,831,624 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365401,547,386 - 1,571,430 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365401,547,406 - 1,571,374 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383139,452,884 - 139,476,516 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3139,452,884 - 139,480,747 (-)EnsemblGRCh38hg38GRCh38
GRCh373139,171,726 - 139,195,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363140,654,416 - 140,678,042 (-)NCBINCBI36Build 36hg18NCBI36
Build 343140,654,424 - 140,678,050NCBI
Celera3137,594,686 - 137,618,327 (-)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3136,547,188 - 136,570,833 (-)NCBIHuRef
CHM1_13139,135,301 - 139,158,940 (-)NCBICHM1_1
T2T-CHM13v2.03142,200,416 - 142,224,059 (-)NCBIT2T-CHM13v2.0
Rbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,372,590 - 98,391,824 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl998,368,168 - 98,391,834 (+)EnsemblGRCm39 Ensembl
GRCm38998,490,537 - 98,509,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl998,486,115 - 98,509,781 (+)EnsemblGRCm38mm10GRCm38
MGSCv37998,390,956 - 98,410,190 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36998,299,905 - 98,319,089 (+)NCBIMGSCv36mm8
Celera998,036,063 - 98,055,300 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.37NCBI
Rbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88107,958,670 - 107,983,850 (+)NCBIGRCr8
mRatBN7.2899,079,293 - 99,104,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,079,104 - 99,104,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8104,752,605 - 104,772,947 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08102,951,869 - 102,972,216 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08100,794,370 - 100,814,714 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08106,479,253 - 106,527,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8106,503,504 - 106,527,711 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08105,945,338 - 105,969,565 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48103,665,461 - 103,685,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18103,684,970 - 103,705,027 (+)NCBI
Celera898,493,627 - 98,513,957 (+)NCBICelera
RH 3.4 Map81052.2RGD
Cytogenetic Map8q31NCBI
Rbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555086,111,168 - 6,136,010 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555086,111,558 - 6,135,929 (+)NCBIChiLan1.0ChiLan1.0
RBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,366,814 - 137,394,504 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13137,369,656 - 137,399,234 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03136,488,536 - 136,513,337 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13144,089,322 - 144,112,840 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3144,089,322 - 144,112,840 (-)Ensemblpanpan1.1panPan2
RBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12335,619,215 - 35,642,249 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2335,619,221 - 35,642,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2335,607,084 - 35,630,082 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02336,157,741 - 36,180,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2336,157,751 - 36,180,723 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12335,838,270 - 35,861,272 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02335,911,556 - 35,934,581 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02336,153,873 - 36,176,911 (-)NCBIUU_Cfam_GSD_1.0
RBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1380,320,931 - 80,352,975 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11380,321,024 - 80,346,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21387,988,050 - 88,013,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11551,077,753 - 51,102,110 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1551,078,169 - 51,102,249 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604124,055,079 - 24,079,140 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473016,016,524 - 16,060,141 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473016,018,142 - 16,060,179 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000029231   ⟹   ENSSTOP00000016221
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365401,547,386 - 1,571,430 (-)Ensembl
RefSeq Acc Id: XM_005328020   ⟹   XP_005328077
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560274,807,601 - 74,831,624 (-)NCBI
SpeTri2.0NW_0049365401,547,406 - 1,571,374 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328077 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016221.1
GenBank Protein KAG3270749 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328077   ⟸   XM_005328020
- UniProtKB: I3MVS6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000016221   ⟸   ENSSTOT00000029231
Protein Domains
Cytosolic fatty-acid binding proteins


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027268 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029231.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  ILBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
NCBI Gene Rbp2 ENTREZGENE
PANTHER PTHR11955 UniProtKB/TrEMBL
  RETINOL-BINDING PROTEIN 2 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/TrEMBL
PROSITE FABP UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt I3MVS6 ENTREZGENE, UniProtKB/TrEMBL