LOC102012042 (cytochrome b-245 heavy chain) - Rat Genome Database

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Gene: LOC102012042 (cytochrome b-245 heavy chain) Chinchilla lanigera
Analyze
Symbol: LOC102012042 (Ensembl: CYBB)
Name: cytochrome b-245 heavy chain
RGD ID: 8765013
Description: ENCODES a protein that exhibits electron transfer activity (ortholog); flavin adenine dinucleotide binding (ortholog); heme binding (ortholog); INVOLVED IN cellular response to cadmium ion (ortholog); cellular response to ethanol (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH autistic disorder (ortholog); brain infarction (ortholog); chronic granulomatous disease (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); NADPH oxidase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955587781,388 - 819,912 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955587781,533 - 818,149 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC102012042
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955587781,388 - 819,912 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955587781,533 - 818,149 (+)NCBIChiLan1.0ChiLan1.0
CYBB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X37,780,059 - 37,813,461 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX37,780,018 - 37,813,461 (+)EnsemblGRCh38hg38GRCh38
GRCh37X37,639,312 - 37,672,714 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X37,524,264 - 37,557,658 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X37,395,536 - 37,428,931NCBI
CeleraX41,776,951 - 41,810,391 (+)NCBICelera
Cytogenetic MapXp21.1-p11.4NCBI
HuRefX35,383,460 - 35,418,115 (+)NCBIHuRef
CHM1_1X37,670,409 - 37,703,853 (+)NCBICHM1_1
T2T-CHM13v2.0X37,183,630 - 37,217,034 (+)NCBIT2T-CHM13v2.0
Cybb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X9,301,493 - 9,354,005 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX9,301,491 - 9,354,010 (-)EnsemblGRCm39 Ensembl
GRCm38X9,435,252 - 9,487,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX9,435,252 - 9,487,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X9,012,378 - 9,046,450 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X8,593,665 - 8,626,226 (-)NCBIMGSCv36mm8
CeleraX7,154,874 - 7,188,991 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX4.3NCBI
Cybb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X16,030,596 - 16,065,065 (-)NCBIGRCr8
mRatBN7.2X13,358,101 - 13,392,570 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX13,359,430 - 13,392,586 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX13,547,712 - 13,579,740 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X17,044,644 - 17,076,674 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X13,301,229 - 13,333,255 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X14,578,330 - 14,610,049 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,578,264 - 14,612,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X15,359,405 - 15,391,317 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X25,514,572 - 25,547,181 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X25,568,040 - 25,600,650 (-)NCBI
CeleraX14,033,486 - 14,065,403 (+)NCBICelera
Cytogenetic MapXq12NCBI
LOC100982531
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X39,424,548 - 39,465,874 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X39,432,267 - 39,469,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X30,230,394 - 30,267,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X37,939,744 - 37,976,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX37,939,704 - 37,973,183 (+)Ensemblpanpan1.1panPan2
CYBB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X32,533,365 - 32,568,149 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX32,533,320 - 32,568,217 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX19,880,947 - 19,915,729 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X32,578,634 - 32,613,434 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX32,578,588 - 32,614,792 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X32,660,059 - 32,694,839 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X32,623,867 - 32,658,828 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X32,671,823 - 32,706,767 (+)NCBIUU_Cfam_GSD_1.0
LOC101966992
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X24,791,011 - 24,835,926 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365024,635,149 - 4,676,904 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365024,631,750 - 4,676,686 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GP91-PHOX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX33,643,648 - 33,680,580 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X33,654,656 - 33,678,346 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X37,355,082 - 37,392,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYBB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366605638,240,025 - 38,273,771 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101709509
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476217,757,404 - 17,793,467 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476217,759,625 - 17,793,434 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000000210   ⟹   ENSCLAP00000000183
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955587781,388 - 819,912 (+)Ensembl
RefSeq Acc Id: XM_005414451   ⟹   XP_005414508
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955587781,533 - 818,149 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414508 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000183
  ENSCLAP00000000183.1
RefSeq Acc Id: XP_005414508   ⟸   XM_005414451
- UniProtKB: A0A8C2UIH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000183   ⟸   ENSCLAT00000000210
Protein Domains
FAD-binding FR-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000210 ENTREZGENE
  ENSCLAT00000000210.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.80 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro Cyt_b245_heavy_chain UniProtKB/TrEMBL
  FAD-bd_8 UniProtKB/TrEMBL
  FAD-bd_FR_type UniProtKB/TrEMBL
  Fe3_Rdtase_TM_dom UniProtKB/TrEMBL
  Fe_red_NAD-bd_6 UniProtKB/TrEMBL
  FNR_nucleotide-bd UniProtKB/TrEMBL
  Riboflavin_synthase-like_b-brl UniProtKB/TrEMBL
NCBI Gene LOC102012042 ENTREZGENE
PANTHER CYTOCHROME B-245 HEAVY CHAIN UniProtKB/TrEMBL
  NADPH OXIDASE UniProtKB/TrEMBL
Pfam FAD_binding_8 UniProtKB/TrEMBL
  Ferric_reduct UniProtKB/TrEMBL
  NAD_binding_6 UniProtKB/TrEMBL
PRINTS GP91PHOX UniProtKB/TrEMBL
PROSITE FAD_FR UniProtKB/TrEMBL
Superfamily-SCOP SSF52343 UniProtKB/TrEMBL
  SSF63380 UniProtKB/TrEMBL
UniProt A0A8C2UIH1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102012042  cytochrome b-245 heavy chain    cytochrome b-245 heavy chain-like  Symbol and/or name change 5135510 APPROVED