CSF1R (colony stimulating factor 1 receptor) - Rat Genome Database

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Gene: CSF1R (colony stimulating factor 1 receptor) Homo sapiens
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Symbol: CSF1R
Name: colony stimulating factor 1 receptor
RGD ID: 737004
HGNC Page HGNC:2433
Description: Enables cytokine binding activity and macrophage colony-stimulating factor receptor activity. Involved in several processes, including cellular response to cytokine stimulus; positive regulation of macromolecule metabolic process; and protein phosphorylation. Located in nucleoplasm and plasma membrane. Implicated in adult-onset leukoencephalopathy with axonal spheroids and pigmented glia; diabetes mellitus; gastrointestinal system cancer (multiple); lung cancer (multiple); and renal cell carcinoma. Biomarker of several diseases, including carcinoma (multiple); cervix uteri carcinoma in situ; liver cirrhosis; lung cancer (multiple); and prostate carcinoma in situ.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: BANDDOS; C-FMS; CD115; CD115 antigen; CSF-1 receptor; CSF-1-R; CSF-1R; CSFR; FIM2; FMS; FMS proto-oncogene; GPSC; HDLS; HDLS1; M-CSF-R; macrophage colony stimulating factor I receptor; macrophage colony-stimulating factor 1 receptor; McDonough feline sarcoma viral (v-fms) oncogene homolog; proto-oncogene c-Fms
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,053,295 - 150,113,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,053,291 - 150,113,372 (-)EnsemblGRCh38hg38GRCh38
GRCh375149,432,858 - 149,492,928 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,413,051 - 149,473,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 345149,413,050 - 149,473,128NCBI
Celera5145,514,237 - 145,574,309 (-)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5144,580,804 - 144,640,914 (-)NCBIHuRef
CHM1_15148,865,545 - 148,925,516 (-)NCBICHM1_1
T2T-CHM13v2.05150,589,842 - 150,649,957 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
CSF1RHumanacute kidney failure  ISORGD:104127257565 RGD 
CSF1RHumananti-basement membrane glomerulonephritis treatmentISORGD:24257257569 RGD 
CSF1RHumananti-basement membrane glomerulonephritis amelioratesISORGD:2425151665824 RGD 
CSF1RHumanBinge Drinking  ISORGD:2425598092506protein:increased expression:hypothalamic microgliaRGD 
CSF1RHumanbone development disease  ISORGD:242541404725 RGD 
CSF1RHumanBrain Hypoxia-Ischemia  ISORGD:2425151665766protein:increased expression:right cerebral hemisphere, astrocyte, neuron (rat)RGD 
CSF1RHumanBrain Hypoxia-Ischemia exacerbatesISORGD:2425151665765 RGD 
CSF1RHumanbreast cancer disease_progressionIEP 2293711 RGD 
CSF1RHumanbreast cancer treatmentISORGD:10412150524304 RGD 
CSF1RHumanCarcinoma, Lewis Lung amelioratesISORGD:10412150524291mouse cell line in a mouse modelRGD 
CSF1RHumanCarotid Artery Injuries  ISORGD:2425151665776mRNA, protein:increased expression: carotid artery endothelium (rat)RGD 
CSF1RHumancervical squamous cell carcinoma  IEP 2299119protein:increased expression:uterine cervixRGD 
CSF1RHumancervix uteri carcinoma in situ disease_progressionIEP 2299119protein:increased expression:uterine cervixRGD 
CSF1RHumancolon adenocarcinoma amelioratesISORGD:10412150524303mouse cell line in a mouse modelRGD 
CSF1RHumancolon adenocarcinoma amelioratesIMP 150524290human cells in a mouse modelRGD 
CSF1RHumancolon adenocarcinoma amelioratesISORGD:10412150524289mouse cell line in a mouse modelRGD 
CSF1RHumancolorectal cancer exacerbatesHEP 150524285protein:decreased expression:colorectum (human)RGD 
CSF1RHumancolorectal carcinoma  IEP 150524297mRNA:decreased expression:colorectal mucosa (human)RGD 
CSF1RHumancrescentic glomerulonephritis treatmentISORGD:2425151665815 RGD 
CSF1RHumandiabetes mellitus  IDA 150524282associated with hepatocellular��carcinoma;DNA:hypermethylation:promoter (human)RGD 
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Original Reference(s)
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:96873708554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:24532199|PMID:28492532
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:96873758554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:25311247|PMID:28492532
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:11582753|RGD:11583329|RGD:11584178|RGD:11584652|RGD:11584757|RGD:11585319|RGD:11585401|RGD:11585866|RGD:11586298|RGD:11586400|RGD:11587283|RGD:11587596|RGD:11588305|RGD:11589132|RGD:11589632|RGD:11590256|RGD:11590848|RGD:11590919|RGD:11591237|RGD:11591605|RGD:11591673|RGD:11592056|RGD:11592432|RGD:11592467|RGD:11592848|RGD:11593177|RGD:11593664|RGD:11593965|RGD:11594204|RGD:11594526|RGD:11594797|RGD:11595087|RGD:11595116|RGD:11595381|RGD:11595560|RGD:11596379|RGD:11596408|RGD:11596727|RGD:11597032|RGD:11598175|RGD:13446174|RGD:13518544|RGD:150407914|RGD:151235522|RGD:15158802|RGD:151718906|RGD:15172066|RGD:151726940|RGD:151751021|RGD:151811922|RGD:15194241|RGD:152029780|RGD:152082596|RGD:152091811|RGD:152108751|RGD:152109199|RGD:152129656|RGD:156016987|RGD:156157702|RGD:156169175|RGD:156407644|RGD:156435916|RGD:28888650|RGD:28888654|RGD:28891905|RGD:28898867|RGD:28898872|RGD:28898881|RGD:28902798|RGD:28902801|RGD:28903064|RGD:405054885|RGD:405123779|RGD:4052281818554872ClinVar Annotator: match by term: CSF1R-related condition | ClinVar Annotator: match by term: Hereditary diffuse more ...ClinVarPMID:28492532
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:85679378554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:16523341|PMID:22197934|PMID:24120500|PMID:25935893|PMID:28492532|PMID:32430064
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:11583260|RGD:11583490|RGD:11584049|RGD:11585066|RGD:11585634|RGD:11587206|RGD:11587965|RGD:11588449|RGD:11588923|RGD:11589438|RGD:11590392|RGD:11590764|RGD:11591068|RGD:11593059|RGD:11593398|RGD:11593743|RGD:11594174|RGD:11594318|RGD:11594814|RGD:11594973|RGD:11595688|RGD:11595970|RGD:11597573|RGD:11597610|RGD:11597688|RGD:11597875|RGD:11598123|RGD:11635720|RGD:11645377|RGD:11652459|RGD:11653037|RGD:11654170|RGD:11659800|RGD:11661303|RGD:11661563|RGD:12743212|RGD:151662445|RGD:152982828|RGD:21071402|RGD:28887975|RGD:28887979|RGD:28887984|RGD:28887987|RGD:28888309|RGD:28888943|RGD:28888947|RGD:28892190|RGD:28892194|RGD:28892198|RGD:28892202|RGD:28896132|RGD:28896471|RGD:28896476|RGD:28898314|RGD:28898318|RGD:28898321|RGD:28898408|RGD:28898614|RGD:28898878|RGD:28899106|RGD:28902300|RGD:28902305|RGD:28903061|RGD:28903066|RGD:401829054|RGD:405278824|RGD:85733288554872ClinVar Annotator: match by term: CSF1R-related condition | ClinVar Annotator: match by term: Hereditary diffuse more ...ClinVar 
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:85679398554872ClinVar Annotator: match by term: Leukoencephalopathy, diffuse hereditary, with spheroids 1ClinVarPMID:22197934|PMID:23698128|PMID:24198292|PMID:24336230|PMID:25741868|PMID:26141177|PMID:28492532
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:85679368554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:19153373|PMID:22197934|PMID:23408870|PMID:24120500|PMID:24145216|PMID:24336230|PMID:28492532
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:96873608554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:23649896|PMID:25741868|PMID:26401554|PMID:28122429|PMID:28492532|PMID:30853829
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:11588746|RGD:11594519|RGD:11650142|RGD:126725402|RGD:126730212|RGD:150435472|RGD:150436918|RGD:150452398|RGD:151348553|RGD:151348617|RGD:151661376|RGD:151661400|RGD:152981237|RGD:28896467|RGD:38597831|RGD:39456345|RGD:401796616|RGD:401869484|RGD:405855010|RGD:408393859|RGD:408394463|RGD:5969278838554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroids | ClinVar Annotator: match by more ...ClinVarPMID:25741868
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:11582350|RGD:11583769|RGD:11590252|RGD:11590598|RGD:11593204|RGD:11597467|RGD:11597544|RGD:11597609|RGD:11598144|RGD:11598335|RGD:126730208|RGD:126730217|RGD:151720050|RGD:151795819|RGD:151806323|RGD:152116009|RGD:156294698|RGD:288883148554872ClinVar Annotator: match by term: CSF1R-related condition | ClinVar Annotator: match by term: Hereditary diffuse more ...ClinVarPMID:25741868|PMID:28492532
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:289025898554872ClinVar Annotator: match by term: Leukoencephalopathy, diffuse hereditary, with spheroids 1ClinVarPMID:22197934|PMID:25741868|PMID:26141825|PMID:28492532|PMID:29486463|PMID:29544907|PMID:30279455|PMID:30528841
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:4056535488554872ClinVar Annotator: match by term: Leukoencephalopathy, diffuse hereditary, with spheroids 1ClinVarPMID:24336230|PMID:25741868|PMID:30982609|PMID:31330095|PMID:32055602
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:8591096|RGD:8591097|RGD:8655082|RGD:96873768554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:24336230
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:9687365|RGD:96873678554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:24198292
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:38464843|RGD:9687355|RGD:9687356|RGD:9687358|RGD:9687359|RGD:9687361|RGD:9687362|RGD:96873638554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:23649896
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:8567938|RGD:85679408554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:22197934
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:9687368|RGD:96873698554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:24532199
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:1504381518554872ClinVar Annotator: match by term: Leukoencephalopathy, diffuse hereditary, with spheroids 1ClinVarPMID:22503135|PMID:23408870|PMID:25741868|PMID:26141825|PMID:27619214|PMID:28492532|PMID:34652888|PMID:35119108
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:384638558554872ClinVar Annotator: match by term: Leukoencephalopathy, diffuse hereditary, with spheroids 1ClinVarPMID:22197934|PMID:25741868|PMID:27680516|PMID:28025469|PMID:28492532|PMID:28824062|PMID:28843019|PMID:30528841|PMID:31872055
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGPRGD:96873738554872ClinVar Annotator: match by term: Hereditary diffuse leukoencephalopathy with spheroidsClinVarPMID:2470618|PMID:24706185|PMID:28492532
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Original Reference(s)
CSF1RHumanacute myeloid leukemia  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:1390197
CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
CSF1RHumanBreast Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16618760
CSF1RHumandisease of cellular proliferation  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:1390197
CSF1RHumanExperimental Liver Cirrhosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
CSF1RHumanLeukoencephalopathies  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:22197934
CSF1RHumanNeoplasm Metastasis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:1390197
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CSF1RHumanadult-onset leukoencephalopathy with axonal spheroids and pigmented glia  IAGP 7240710 OMIM 
CSF1RHumanBRAIN ABNORMALITIES, NEURODEGENERATION, AND DYSOSTEOSCLEROSIS  IAGP 7240710 OMIM 

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CSF1RHuman(1->4)-beta-D-glucan multiple interactionsISORGD:104126480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of CSF1R mRNACTDPMID:36331819
CSF1RHuman1,2-dimethylhydrazine increases expressionISORGD:1041264804641,2-Dimethylhydrazine results in increased expression of CSF1R mRNACTDPMID:22206623
CSF1RHuman1,4-benzoquinone multiple interactionsEXP 6480464quinone promotes the reaction [[CSF1R protein co-treated with Lipopolysaccharides] results in increased abundance of Nitric more ...CTDPMID:7884313
CSF1RHuman1-naphthyl isothiocyanate increases expressionISORGD:242564804641-Naphthylisothiocyanate results in increased expression of CSF1R mRNACTDPMID:25380136
CSF1RHuman17alpha-ethynylestradiol multiple interactionsISORGD:104126480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CSF1R mRNACTDPMID:17942748
CSF1RHuman17alpha-ethynylestradiol increases expressionISORGD:104126480464Ethinyl Estradiol results in increased expression of CSF1R mRNACTDPMID:12072388
CSF1RHuman17beta-estradiol increases expressionISORGD:104126480464Estradiol results in increased expression of CSF1R mRNACTDPMID:19484750
CSF1RHuman17beta-estradiol decreases expressionISORGD:104126480464Estradiol results in decreased expression of CSF1R mRNACTDPMID:39298647
CSF1RHuman17beta-estradiol multiple interactionsISORGD:24256480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of CSF1R mRNACTDPMID:32741896
CSF1RHuman17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of CSF1R mRNACTDPMID:30165855
CSF1RHuman17beta-estradiol 3-benzoate multiple interactionsISORGD:24256480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of CSF1R mRNACTDPMID:32741896
CSF1RHuman2,2',4,4'-Tetrabromodiphenyl ether affects expressionISORGD:1041264804642,2',4,4'-tetrabromodiphenyl ether affects the expression of CSF1R mRNACTDPMID:30294300
CSF1RHuman2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:104126480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CSF1R mRNACTDPMID:17942748
CSF1RHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:24256480464Tetrachlorodibenzodioxin results in increased expression of CSF1R mRNACTDPMID:32109520|PMID:34747641
CSF1RHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:104126480464Tetrachlorodibenzodioxin results in increased expression of CSF1R mRNACTDPMID:15034205
CSF1RHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:104126480464Tetrachlorodibenzodioxin affects the expression of CSF1R mRNACTDPMID:21570461|PMID:28922406
CSF1RHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:24256480464Tetrachlorodibenzodioxin affects the expression of CSF1R mRNACTDPMID:22298810
CSF1RHuman2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISORGD:1041264804642,2',4,4',5-brominated diphenyl ether affects the expression of CSF1R mRNACTDPMID:38648751
CSF1RHuman2-tert-butylhydroquinone multiple interactionsISORGD:104126480464[2-tert-butylhydroquinone co-treated with CSF1 protein co-treated with TNFSF11 protein] results in decreased expression of CSF1R more ...CTDPMID:23112101
CSF1RHuman3,4-methylenedioxymethamphetamine increases expressionISORGD:104126480464N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of CSF1R mRNACTDPMID:20188158

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Biological Process
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CSF1RHumanaxon guidance involved_inIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumancardiac muscle cell proliferation  ISORGD:24259068941 RGDPMID:2447874|REF_RGD_ID:151665807
CSF1RHumancell migration involved_inIBAMGI:95558|MGI:96677|MGI:96683|MGI:97530|MGI:97531|PANTHER:PTN008404985|RGD:3285|RGD:620568|UniProtKB:A0A8M9QKL5|UniProtKB:P09619|UniProtKB:P10721|UniProtKB:P17948|ZFIN:ZDB-GENE-001205-1|ZFIN:ZDB-GENE-980526-326|ZFIN:ZDB-GENE-980526-464|ZFIN:ZDB-GENE-990415-208150520179 GO_CentralGO_REF:0000033
CSF1RHumancell population proliferation involved_inIMP 150520179 PMID:7683918UniProtPMID:7683918
CSF1RHumancell population proliferation involved_inTAS 150520179 PMID:8981357PINCPMID:8981357
CSF1RHumancell surface receptor protein tyrosine kinase signaling pathway involved_inISSUniProtKB:P09581150520179 UniProtGO_REF:0000024
CSF1RHumancell surface receptor protein tyrosine kinase signaling pathway involved_inIBAFB:FBgn0003366|FB:FBgn0003731|FB:FBgn0003733|FB:FBgn0010389|FB:FBgn0032006|FB:FBgn0040505|FB:FBgn0283499|FB:FBgn0285896|MGI:104757|MGI:104771|MGI:1339758|MGI:1345277|MGI:95294|MGI:95410|MGI:95411|MGI:95522|MGI:95525|MGI:95558|MGI:96433|MGI:96575|MGI:97384|MGI:97530|MGI:97531|MGI:97902|MGI:99216|MGI:99654|PANTHER:PTN001230349|RGD:2561|RGD:2611|RGD:2612|RGD:2917|RGD:2965|RGD:3213|RGD:620486|UniProtKB:A0A8J1L5W1|UniProtKB:A0A8M1NUM7|UniProtKB:A0A8M1PBN6|UniProtKB:A0A8M9QKL5|UniProtKB:A0A8N7UZS2|UniProtKB:P00533|UniProtKB:P04626|UniProtKB:P04629|UniProtKB:P06213|UniProtKB:P07949|UniProtKB:P08069|UniProtKB:P09619|UniProtKB:P10721|UniProtKB:P11362|UniProtKB:P16234|UniProtKB:P17948|UniProtKB:P21860|UniProtKB:P22455|UniProtKB:P22607|UniProtKB:P29317|UniProtKB:P29376|UniProtKB:P35916|UniProtKB:P54760|UniProtKB:Q02763|UniProtKB:Q15303|UniProtKB:Q16288|UniProtKB:Q16620|UniProtKB:Q9UM73|WB:WBGene00001184|ZFIN:ZDB-GENE-980526-255150520179 GO_CentralGO_REF:0000033
CSF1RHumancell surface receptor protein tyrosine kinase signaling pathway involved_inIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumancell surface receptor protein tyrosine kinase signaling pathway involved_inIEAInterPro:IPR001824150520179 InterProGO_REF:0000002
CSF1RHumancell-cell junction maintenance involved_inIMP 150520179 PMID:15117969UniProtPMID:15117969
CSF1RHumancellular response to cytokine stimulus involved_inISSUniProtKB:P09581150520179 UniProtGO_REF:0000024
CSF1RHumancellular response to cytokine stimulus involved_inIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumancellular response to macrophage colony-stimulating factor stimulus involved_inIMP 150520179 PMID:20504948, PMID:7683918UniProtPMID:20504948|PMID:7683918
CSF1RHumancellular response to macrophage colony-stimulating factor stimulus  ISORGD:24259068941 RGDPMID:9168857|REF_RGD_ID:151665780
CSF1RHumancellular response to macrophage colony-stimulating factor stimulus involved_inIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumancellular response to transforming growth factor beta stimulus  ISORGD:24259068941 RGDPMID:23110133|REF_RGD_ID:151665477
CSF1RHumancellular response to tumor necrosis factor  ISORGD:24259068941 RGDPMID:23110133|REF_RGD_ID:151665477
CSF1RHumancytokine-mediated signaling pathway involved_inIEAInterPro:IPR030658150520179 InterProGO_REF:0000002
CSF1RHumancytokine-mediated signaling pathway involved_inIMP 150520179 PMID:20504948UniProtPMID:20504948
CSF1RHumandentate gyrus development  ISORGD:24259068941 RGDPMID:33450391|REF_RGD_ID:126781687
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Cellular Component
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Original Reference(s)
CSF1RHumancell body  ISORGD:24259068941 RGDPMID:19219684|REF_RGD_ID:151665779
CSF1RHumancell surface located_inISSUniProtKB:P09581150520179 PMID:8922060UniProtGO_REF:0000024|PMID:8922060
CSF1RHumancell surface located_inIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumanCSF1-CSF1R complex part_ofISSUniProtKB:P09581150520179 PMID:19017797BHF-UCLPMID:19017797
CSF1RHumanCSF1-CSF1R complex part_ofIBAMGI:1339758|PANTHER:PTN002814394150520179 GO_CentralGO_REF:0000033
CSF1RHumanCSF1-CSF1R complex part_ofIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
CSF1RHumanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
CSF1RHumanmembrane located_inIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
CSF1RHumanperikaryon  ISORGD:24259068941 RGDPMID:8304053|REF_RGD_ID:151665809
CSF1RHumanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
CSF1RHumanplasma membrane is_active_inIBAFB:FBgn0003731|FB:FBgn0003733|FB:FBgn0010389|FB:FBgn0011829|FB:FBgn0032006|FB:FBgn0283499|MGI:103581|MGI:104771|MGI:1339758|MGI:95294|MGI:95410|MGI:95411|MGI:95522|MGI:95524|MGI:95559|MGI:96433|MGI:96575|MGI:96683|MGI:97530|MGI:99614|PANTHER:PTN001230349|RGD:2252|RGD:2543|RGD:2869|RGD:2917|RGD:3082|RGD:3211|RGD:3213|RGD:3214|RGD:3284|RGD:3285|RGD:619855|RGD:620144|RGD:69323|UniProtKB:A0A8J1L5W1|UniProtKB:G1K218|UniProtKB:P00533|UniProtKB:P04626|UniProtKB:P04629|UniProtKB:P06213|UniProtKB:P07333|UniProtKB:P08069|UniProtKB:P08581|UniProtKB:P09619|UniProtKB:P10721|UniProtKB:P11362|UniProtKB:P16234|UniProtKB:P17948|UniProtKB:P21709|UniProtKB:P21802|UniProtKB:P21860|UniProtKB:P22455|UniProtKB:P22607|UniProtKB:P29317|UniProtKB:P30530|UniProtKB:P35968|UniProtKB:P54760|UniProtKB:Q01973|UniProtKB:Q05688|UniProtKB:Q15303|UniProtKB:Q16832|WB:WBGene00000289|WB:WBGene00000898|WB:WBGene00002299|WB:WBGene00003007|WB:WBGene00006868|ZFIN:ZDB-GENE-030131-6458150520179 GO_CentralGO_REF:0000033
CSF1RHumanplasma membrane located_inTAS 150520179 PMID:2421165ReactomePMID:2421165|Reactome:R-HSA-6787820|Reactome:R-HSA-8853908|Reactome:R-HSA-9009485|Reactome:R-HSA-9009554
CSF1RHumanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
CSF1RHumanplasma membrane located_inIDA 150520179 HPAGO_REF:0000052
CSF1RHumanplasma membrane located_inIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumanreceptor complex part_ofIBAFB:FBgn0015380|FB:FBgn0024245|FB:FBgn0033791|FB:FBgn0283499|MGI:95410|PANTHER:PTN001230349|UniProtKB:A6QR62|UniProtKB:O15146|UniProtKB:P00533|UniProtKB:P04626|UniProtKB:P04629|UniProtKB:P06213|UniProtKB:P07949|UniProtKB:P08069|UniProtKB:P11362|UniProtKB:P14616|UniProtKB:P17948|UniProtKB:P21860|UniProtKB:P35916|UniProtKB:Q01973|UniProtKB:Q08345|UniProtKB:Q15303|UniProtKB:Q16288|UniProtKB:Q16620150520179 GO_CentralGO_REF:0000033
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Molecular Function
1 to 20 of 34 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CSF1RHumanATP binding enablesIEAUniProtKB-KW:KW-0067150520179 UniProtGO_REF:0000043
CSF1RHumanATP binding enablesIEAUniRule:UR001503341150520179 UniProtGO_REF:0000104
CSF1RHumanATP binding enablesIEAInterPro:IPR000719|InterPro:IPR001824|InterPro:IPR017441150520179 InterProGO_REF:0000002
CSF1RHumancytokine binding enablesIDA 150520179 PMID:20504948UniProtPMID:20504948
CSF1RHumancytokine binding enablesIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumancytokine binding enablesIEAInterPro:IPR030658150520179 InterProGO_REF:0000002
CSF1RHumancytokine binding enablesISSUniProtKB:P09581150520179 PMID:19017797BHF-UCLPMID:19017797
CSF1RHumangrowth factor binding enablesIBAMGI:96683|MGI:97530|PANTHER:PTN004704336|RGD:2621|RGD:2965|RGD:621737|UniProtKB:P09619|UniProtKB:P16234|UniProtKB:P17948|UniProtKB:P35916|UniProtKB:P35968150520179 GO_CentralGO_REF:0000033
CSF1RHumankinase activity enablesIEAUniProtKB-KW:KW-0418150520179 UniProtGO_REF:0000043
CSF1RHumanmacrophage colony-stimulating factor receptor activity enablesIEAUniProtKB:P09581|ensembl:ENSMUSP00000110923150520179 EnsemblGO_REF:0000107
CSF1RHumanmacrophage colony-stimulating factor receptor activity enablesIBAMGI:1339758|PANTHER:PTN002814394|UniProtKB:P07333150520179 GO_CentralGO_REF:0000033
CSF1RHumanmacrophage colony-stimulating factor receptor activity enablesTAS 150520179 PMID:8981357PINCPMID:8981357
CSF1RHumanmacrophage colony-stimulating factor receptor activity enablesISSUniProtKB:P09581150520179 BHF-UCLGO_REF:0000024
CSF1RHumanmacrophage colony-stimulating factor receptor activity enablesIMP 150520179 PMID:20504948, PMID:7683918UniProtPMID:20504948|PMID:7683918
CSF1RHumanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
CSF1RHumannucleotide binding enablesIEAUniRule:UR001503341150520179 UniProtGO_REF:0000104
CSF1RHumannucleotide binding enablesIEAUniProtKB-KW:KW-0547150520179 UniProtGO_REF:0000043
CSF1RHumanprotein binding enablesIPIUniProtKB:P29323|UniProtKB:Q15375150520179 PMID:35384245IntActPMID:35384245
CSF1RHumanprotein binding enablesIPIUniProtKB:P09603150520179 PMID:22153499, PMID:22902366, PMID:26235028IntActPMID:22153499|PMID:22902366|PMID:26235028
CSF1RHumanprotein binding enablesIPIUniProtKB:Q6ZMJ4-1150520179 PMID:23478061IntActPMID:23478061
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Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CSF1RHumanendocytosis pathway  IEA 6907045 KEGGhsa:04144
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CSF1RHumanLung adenocarcinoma susceptibilityIAGP 150524283DNA:missense mutation:CDS:p.H362R (rs10079250)RGD 
1 to 20 of 79 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CSF1RHumanAbnormal cerebral white matter morphology  IAGP 8699517 HPOMIM:221820
CSF1RHumanAdult onset  IAGP 8699517 HPOMIM:221820
CSF1RHumanAgenesis of corpus callosum  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanApraxia  IAGP 8699517 HPOMIM:221820
CSF1RHumanAtaxia  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanAtypical behavior  IAGP 8699517 HPOMIM:221820
CSF1RHumanAuditory hallucination  IAGP 8699517 HPOMIM:221820|PMID:27423618
CSF1RHumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:221820
CSF1RHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanBell-shaped thorax  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanBradykinesia  IAGP 8699517 HPOMIM:221820
CSF1RHumanBulbous nose  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanCentral nervous system axonal spheroid  IAGP 8699517 HPOMIM:221820|PMID:27423618
CSF1RHumanCerebellar hypoplasia  IAGP 8699517 HPOMIM:618476
CSF1RHumanCerebral calcification  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanChiari type I malformation  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanChildhood onset  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanCNS demyelination  IAGP 8699517 HPOMIM:221820
CSF1RHumanCognitive impairment  IAGP 8699517 HPOMIM:618476|PMID:30982609
CSF1RHumanCongenital onset  IAGP 8699517 HPOMIM:618476|PMID:30982609
1 to 20 of 79 rows
1 to 18 of 18 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CSF1RHumanAlzheimer disease  IAGPRGD:143502658554872ClinVar Annotator: match by term: Alzheimer diseaseClinVarPMID:30279455
CSF1RHumanAlzheimer disease  IAGPRGD:143502688554872ClinVar Annotator: match by term: Alzheimer diseaseClinVarPMID:30279455
CSF1RHumanFrontotemporal dementia  IAGPRGD:288758948554872ClinVar Annotator: match by term: Frontotemporal dementiaClinVarPMID:25741868|PMID:26476772|PMID:28492532|PMID:31836585
CSF1RHumanHematological neoplasm  IAGPRGD:128344818554872ClinVar Annotator: match by term: Hematological neoplasmClinVar 
CSF1RHumanHematological neoplasm  IAGPRGD:128369428554872ClinVar Annotator: match by term: Hematological neoplasmClinVar 
CSF1RHumanHematological neoplasm  IAGPRGD:128416758554872ClinVar Annotator: match by term: Hematological neoplasmClinVar 
CSF1RHumanHematological neoplasm  IAGPRGD:128399108554872ClinVar Annotator: match by term: Hematological neoplasmClinVar 
CSF1RHumanHematological neoplasm  IAGPRGD:128405778554872ClinVar Annotator: match by term: Hematological neoplasmClinVar 
CSF1RHumanHematological neoplasm  IAGPRGD:128363438554872ClinVar Annotator: match by term: Hematological neoplasmClinVar 
CSF1RHumanMyeloproliferative disorder  IAGPRGD:128405778554872ClinVar Annotator: match by term: Myeloproliferative disorderClinVar 
CSF1RHumanNeoplasm  IAGPRGD:128344818554872ClinVar Annotator: match by term: NeoplasmClinVar 
CSF1RHumanNeoplasm  IAGPRGD:128363438554872ClinVar Annotator: match by term: NeoplasmClinVar 
CSF1RHumanNeoplasm  IAGPRGD:128399108554872ClinVar Annotator: match by term: NeoplasmClinVar 
CSF1RHumanNeoplasm  IAGPRGD:128397688554872ClinVar Annotator: match by term: NeoplasmClinVar 
CSF1RHumanNeoplasm  IAGPRGD:128369428554872ClinVar Annotator: match by term: NeoplasmClinVar 
CSF1RHumanNeoplasm  IAGPRGD:128343828554872ClinVar Annotator: match by term: NeoplasmClinVar 
CSF1RHumanNeoplasm  IAGPRGD:128425018554872ClinVar Annotator: match by term: NeoplasmClinVar 
CSF1RHumanParkinsonism  IAGPRGD:127390748554872ClinVar Annotator: match by term: ParkinsonismClinVarPMID:25741868|PMID:28492532
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1 to 20 of 57 rows
#
Reference Title
Reference Citation
1. High co-expression of IL-34 and M-CSF correlates with tumor progression and poor survival in lung cancers. Baghdadi M, etal., Sci Rep. 2018 Jan 11;8(1):418. doi: 10.1038/s41598-017-18796-8.
2. Early life alcohol exposure primes hypothalamic microglia to later-life hypersensitivity to immune stress: possible epigenetic mechanism. Chastain LG, etal., Neuropsychopharmacology. 2019 Aug;44(9):1579-1588. doi: 10.1038/s41386-019-0326-7. Epub 2019 Jan 30.
3. Autocrine CSF-1R signaling drives mesothelioma chemoresistance via AKT activation. Cioce M, etal., Cell Death Dis. 2014 Apr 10;5:e1167. doi: 10.1038/cddis.2014.136.
4. Effects of the cFMS kinase inhibitor 5-(3-methoxy-4-((4-methoxybenzyl)oxy)benzyl)pyrimidine-2,4-diamine (GW2580) in normal and arthritic rats. Conway JG, etal., J Pharmacol Exp Ther. 2008 Jul;326(1):41-50. doi: 10.1124/jpet.107.129429. Epub 2008 Apr 23.
5. CSF1R methylation is a key regulatory mechanism of tumor-associated macrophages in hepatocellular carcinoma. Cui B, etal., Oncol Lett. 2020 Aug;20(2):1835-1845. doi: 10.3892/ol.2020.11726. Epub 2020 Jun 11.
6. [Methylation status of c-fms oncogene in hepatocellular carcinoma and its relation with clinical pathology]. Cui J and Yang D, Zhonghua Gan Zang Bing Za Zhi. 2001 Jun;9(3):137-8.
7. The potential mechanism of INHBC and CSF1R in diabetic nephropathy. Du XY, etal., Eur Rev Med Pharmacol Sci. 2020 Feb;24(4):1970-1978. doi: 10.26355/eurrev_202002_20374.
8. qPCR in gastrointestinal stromal tumors: Evaluation of reference genes and expression analysis of KIT and the alternative receptor tyrosine kinases FLT3, CSF1-R, PDGFRB, MET and AXL. Fassunke J, etal., BMC Mol Biol. 2010 Dec 20;11:100. doi: 10.1186/1471-2199-11-100.
9. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
10. Is CSF1R Expression Localization Crucial for its Prognostic Value in Colorectal Cancer? Guan H, etal., Appl Immunohistochem Mol Morphol. 2021 Jan;29(1):68-75. doi: 10.1097/PAI.0000000000000844.
11. Up-regulation of VEGF, c-fms and COX-2 expression correlates with severity of cervical cancer precursor (CIN) lesions and invasive disease. Hammes LS, etal., Gynecol Oncol. 2008 Jun 18.
12. Role of macrophages in the fibrotic phase of rat crescentic glomerulonephritis. Han Y, etal., Am J Physiol Renal Physiol. 2013 Apr 15;304(8):F1043-53. doi: 10.1152/ajprenal.00389.2012. Epub 2013 Feb 13.
13. c-fms blockade reverses glomerular macrophage infiltration and halts development of crescentic anti-GBM glomerulonephritis in the rat. Han Y, etal., Lab Invest. 2011 Jul;91(7):978-91. doi: 10.1038/labinvest.2011.61. Epub 2011 Apr 25.
14. Rapid activation of tumor-associated macrophages boosts preexisting tumor immunity. Hoves S, etal., J Exp Med. 2018 Mar 5;215(3):859-876. doi: 10.1084/jem.20171440. Epub 2018 Feb 7.
15. Rh-CSF1 attenuates neuroinflammation via the CSF1R/PLCG2/PKCε pathway in a rat model of neonatal HIE. Hu X, etal., J Neuroinflammation. 2020 Jun 10;17(1):182. doi: 10.1186/s12974-020-01862-w.
16. Rh-CSF1 Attenuates Oxidative Stress and Neuronal Apoptosis via the CSF1R/PLCG2/PKA/UCP2 Signaling Pathway in a Rat Model of Neonatal HIE. Hu X, etal., Oxid Med Cell Longev. 2020 Oct 7;2020:6801587. doi: 10.1155/2020/6801587. eCollection 2020.
17. CSF-1 receptor-dependent colon development, homeostasis and inflammatory stress response. Huynh D, etal., PLoS One. 2013;8(2):e56951. doi: 10.1371/journal.pone.0056951. Epub 2013 Feb 22.
18. Expression of colony-stimulating factor 1 receptor during prostate development and prostate cancer progression. Ide H, etal., Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14404-9. Epub 2002 Oct 15.
19. A novel glycobiomarker, Wisteria floribunda agglutinin macrophage colony-stimulating factor receptor, for predicting carcinogenesis of liver cirrhosis. Iio E, etal., Int J Cancer. 2016 Mar 15;138(6):1462-71. doi: 10.1002/ijc.29880. Epub 2015 Oct 20.
20. Preventive and therapeutic effects of imatinib in Wistar-Kyoto rats with anti-glomerular basement membrane glomerulonephritis. Iyoda M, etal., Kidney Int. 2009 May;75(10):1060-70. doi: 10.1038/ki.2009.43. Epub 2009 Feb 25.
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PMID:1334406   PMID:1531036   PMID:1611909   PMID:1829836   PMID:1833648   PMID:2172781   PMID:2406720   PMID:2408759   PMID:2421165   PMID:2524025   PMID:2524648   PMID:2846185  
PMID:2978516   PMID:2986142   PMID:3022923   PMID:3484837   PMID:3525854   PMID:3532121   PMID:3974576   PMID:4028159   PMID:7520523   PMID:7597091   PMID:7636265   PMID:7681396  
PMID:7683918   PMID:7782294   PMID:8001978   PMID:8262059   PMID:8355686   PMID:8786123   PMID:8922060   PMID:8947469   PMID:8981357   PMID:9027509   PMID:9178909   PMID:9191055  
PMID:9380408   PMID:9616179   PMID:9624537   PMID:9857184   PMID:9949175   PMID:10022833   PMID:10025673   PMID:10499626   PMID:10597251   PMID:10648820   PMID:11297560   PMID:11847211  
PMID:11850825   PMID:11852791   PMID:11891846   PMID:12031912   PMID:12130514   PMID:12133942   PMID:12372416   PMID:12477932   PMID:12485477   PMID:12529666   PMID:12773394   PMID:14654075  
PMID:14738146   PMID:15117969   PMID:15144560   PMID:15203218   PMID:15297464   PMID:15626739   PMID:15735664   PMID:16034075   PMID:16170366   PMID:16335952   PMID:16341674   PMID:16344560  
PMID:16600665   PMID:16631474   PMID:16648572   PMID:16708222   PMID:16823860   PMID:17292918   PMID:17360941   PMID:17420255   PMID:17512498   PMID:17675037   PMID:17880962   PMID:17893228  
PMID:17960171   PMID:17981568   PMID:18294963   PMID:18593464   PMID:18676680   PMID:18788612   PMID:18814279   PMID:18971950   PMID:18997822   PMID:19017797   PMID:19132917   PMID:19151756  
PMID:19170196   PMID:19321746   PMID:19351817   PMID:19375163   PMID:19377443   PMID:19453261   PMID:19585521   PMID:19625176   PMID:19692168   PMID:19762488   PMID:20098615   PMID:20181277  
PMID:20379614   PMID:20436485   PMID:20504948   PMID:20574656   PMID:20829061   PMID:20974809   PMID:21041311   PMID:21049007   PMID:21063905   PMID:21466808   PMID:21567396   PMID:21873635  
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CSF1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,053,295 - 150,113,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,053,291 - 150,113,372 (-)EnsemblGRCh38hg38GRCh38
GRCh375149,432,858 - 149,492,928 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,413,051 - 149,473,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 345149,413,050 - 149,473,128NCBI
Celera5145,514,237 - 145,574,309 (-)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5144,580,804 - 144,640,914 (-)NCBIHuRef
CHM1_15148,865,545 - 148,925,516 (-)NCBICHM1_1
T2T-CHM13v2.05150,589,842 - 150,649,957 (-)NCBIT2T-CHM13v2.0
Csf1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,238,644 - 61,264,211 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,233,670 - 61,265,221 (+)EnsemblGRCm39 Ensembl
GRCm381861,105,572 - 61,131,139 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,100,598 - 61,132,149 (+)EnsemblGRCm38mm10GRCm38
MGSCv371861,265,226 - 61,290,793 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361861,230,941 - 61,256,506 (+)NCBIMGSCv36mm8
Celera1862,392,678 - 62,417,929 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
Csf1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,834,152 - 56,860,804 (+)NCBIGRCr8
mRatBN7.21854,546,673 - 54,590,418 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,546,659 - 54,590,415 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1856,651,929 - 56,678,637 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,366,526 - 57,393,238 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01855,187,862 - 55,214,296 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,414,493 - 56,458,300 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,414,488 - 56,458,300 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,662,670 - 55,689,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41857,080,324 - 57,107,295 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1852,716,221 - 52,742,736 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Csf1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,434,453 - 4,461,751 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,434,486 - 4,462,505 (+)NCBIChiLan1.0ChiLan1.0
CSF1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24145,283,044 - 145,316,620 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15143,422,593 - 143,481,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05145,478,725 - 145,537,858 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15151,483,948 - 151,543,128 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,483,572 - 151,517,415 (-)Ensemblpanpan1.1panPan2
CSF1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,980,699 - 59,010,683 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,980,788 - 59,010,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,746,695 - 58,776,657 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0459,461,238 - 59,491,183 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,444,535 - 59,544,925 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1459,249,977 - 59,279,943 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,364,574 - 59,394,530 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,895,615 - 59,925,571 (+)NCBIUU_Cfam_GSD_1.0
Csf1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213143,324,957 - 143,353,222 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365044,898,945 - 4,928,923 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365044,898,947 - 4,927,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSF1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,102,147 - 151,147,633 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,102,138 - 151,130,311 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22157,855,536 - 157,882,913 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSF1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12352,663,290 - 52,723,652 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2352,664,076 - 52,697,304 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603424,993,437 - 25,053,747 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csf1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,363,908 - 9,391,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247749,363,156 - 9,391,939 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in CSF1R
851 total Variants

1 to 10 of 930 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001288705.3(CSF1R):c.1766G>A (p.Gly589Glu) single nucleotide variant not provided [RCV001852634] Chr5:150061583 [GRCh38]
Chr5:149441146 [GRCh37]
Chr5:5q32
pathogenic
NM_001288705.3(CSF1R):c.2297T>C (p.Met766Thr) single nucleotide variant Hereditary diffuse leukoencephalopathy with spheroids [RCV000031928] Chr5:150057309 [GRCh38]
Chr5:149436872 [GRCh37]
Chr5:5q32
pathogenic
NM_001288705.3(CSF1R):c.2308G>C (p.Ala770Pro) single nucleotide variant not provided [RCV001268235] Chr5:150057298 [GRCh38]
Chr5:149436861 [GRCh37]
Chr5:5q32
pathogenic
NM_001288705.3(CSF1R):c.2320-2A>G single nucleotide variant Hereditary diffuse leukoencephalopathy with spheroids [RCV000031930] Chr5:150056343 [GRCh38]
Chr5:149435906 [GRCh37]
Chr5:5q32
pathogenic
NM_001288705.3(CSF1R):c.2324T>A (p.Ile775Asn) single nucleotide variant Hereditary diffuse leukoencephalopathy with spheroids [RCV000031931] Chr5:150056337 [GRCh38]
Chr5:149435900 [GRCh37]
Chr5:5q32
pathogenic
NM_001288705.3(CSF1R):c.2345G>A (p.Arg782His) single nucleotide variant Brain abnormalities, neurodegeneration, and dysosteosclerosis [RCV002482936]|Hereditary diffuse leukoencephalopathy with spheroids [RCV000031932]|not provided [RCV001561353] Chr5:150056316 [GRCh38]
Chr5:149435879 [GRCh37]
Chr5:5q32
pathogenic|likely pathogenic
NM_001288705.3(CSF1R):c.2442+5G>C single nucleotide variant Hereditary diffuse leukoencephalopathy with spheroids [RCV000031933] Chr5:150056214 [GRCh38]
Chr5:149435777 [GRCh37]
Chr5:5q32
pathogenic
NM_001288705.3(CSF1R):c.2546T>C (p.Phe849Ser) single nucleotide variant Hereditary diffuse leukoencephalopathy with spheroids [RCV000031934] Chr5:150056034 [GRCh38]
Chr5:149435597 [GRCh37]
Chr5:5q32
pathogenic
NM_001288705.3(CSF1R):c.2543TCT[1] (p.Phe849del) microsatellite Hereditary diffuse leukoencephalopathy with spheroids [RCV000031935] Chr5:150056032..150056034 [GRCh38]
Chr5:149435595..149435597 [GRCh37]
Chr5:5q32
pathogenic
NM_001288705.3(CSF1R):c.2603T>C (p.Leu868Pro) single nucleotide variant Hereditary diffuse leukoencephalopathy with spheroids [RCV000031936] Chr5:150055288 [GRCh38]
Chr5:149434851 [GRCh37]
Chr5:5q32
pathogenic
1 to 10 of 930 rows

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR155hsa-miR-155-5pMirtarbaseexternal_infoProteomicsFunctional MTI (Weak)20452491

Predicted Target Of
Summary Value
Count of predictions:3084
Count of miRNA genes:942
Interacting mature miRNAs:1163
Transcripts:ENST00000286301, ENST00000502660, ENST00000504875, ENST00000509861, ENST00000511344, ENST00000513609, ENST00000515068, ENST00000515239, ENST00000543093
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 36 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406971333GWAS620309_Hmonocyte count QTL GWAS620309 (human)1e-12monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)5150053837150053839Human
597071632GWAS1167706_Hfeeling emotionally hurt measurement QTL GWAS1167706 (human)1e-08feeling emotionally hurt measurement5150059481150059482Human
406971334GWAS620310_Hmonocyte count QTL GWAS620310 (human)4e-23monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)5150088100150088101Human
597304978GWAS1401052_Htotal blood protein measurement QTL GWAS1401052 (human)2e-10total blood protein measurementblood protein measurement (CMO:0000028)5150084545150084546Human
597434005GWAS1530079_Hprotein measurement QTL GWAS1530079 (human)5e-09protein measurement5150079818150079819Human
597238227GWAS1334301_Hlymphocyte:monocyte ratio QTL GWAS1334301 (human)7e-28leukocyte quantity (VT:0000217)5150088100150088101Human
597206164GWAS1302238_Hhemoglobin measurement QTL GWAS1302238 (human)0.000002hemoglobin measurementhemoglobin measurement (CMO:0000508)5150063216150063217Human
597236821GWAS1332895_Hmonocyte count QTL GWAS1332895 (human)2e-19monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)5150088100150088101Human
597609805GWAS1666665_Haspartate aminotransferase to alanine aminotransferase ratio QTL GWAS1666665 (human)6e-17aspartate aminotransferase to alanine aminotransferase ratioserum aspartate aminotransferase activity level to alanine aminotransferase activity level ratio (CMO:0002245)5150053300150053301Human
597169740GWAS1265814_Haspartate aminotransferase measurement QTL GWAS1265814 (human)1e-13aspartate aminotransferase measurementblood aspartate aminotransferase activity level (CMO:0000580)5150064431150064432Human

1 to 10 of 36 rows
RH69916  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,493,481 - 149,493,582UniSTSGRCh37
Build 365149,473,674 - 149,473,775RGDNCBI36
Celera5145,574,855 - 145,574,956RGD
Cytogenetic Map5q32UniSTS
Cytogenetic Map5q33.1UniSTS
HuRef5144,641,460 - 144,641,561UniSTS
GeneMap99-GB4 RH Map5583.24UniSTS
NCBI RH Map5891.6UniSTS
RH15986  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,432,522 - 149,432,674UniSTSGRCh37
Build 365149,412,715 - 149,412,867RGDNCBI36
Celera5145,513,905 - 145,514,057RGD
Cytogenetic Map5q32UniSTS
HuRef5144,580,472 - 144,580,624UniSTS
GeneMap99-GB4 RH Map5579.0UniSTS
NCBI RH Map5891.6UniSTS
D5S1469  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,455,853 - 149,456,036UniSTSGRCh37
Build 365149,436,046 - 149,436,229RGDNCBI36
Celera5145,537,235 - 145,537,410RGD
Cytogenetic Map5q32UniSTS
TNG Radiation Hybrid Map569465.0UniSTS
GDB:181638  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,465,942 - 149,466,170UniSTSGRCh37
Build 365149,446,135 - 149,446,363RGDNCBI36
Celera5145,547,312 - 145,547,540RGD
Cytogenetic Map5q32UniSTS
HuRef5144,613,953 - 144,614,181UniSTS
GDB:192951  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,463,711 - 149,464,053UniSTSGRCh37
Build 365149,443,904 - 149,444,246RGDNCBI36
Celera5145,545,085 - 145,545,423RGD
Cytogenetic Map5q32UniSTS
HuRef5144,611,696 - 144,612,047UniSTS
GDB:192952  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,455,835 - 149,456,030UniSTSGRCh37
Build 365149,436,028 - 149,436,223RGDNCBI36
Celera5145,537,217 - 145,537,404RGD
Cytogenetic Map5q32UniSTS
HuRef5144,603,829 - 144,604,016UniSTS
GDB:212649  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,455,735 - 149,456,053UniSTSGRCh37
Build 365149,435,928 - 149,436,246RGDNCBI36
Celera5145,537,117 - 145,537,427RGD
Cytogenetic Map5q32UniSTS
HuRef5144,603,729 - 144,604,039UniSTS
PMC156747P2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,456,847 - 149,457,338UniSTSGRCh37
Build 365149,437,040 - 149,437,531RGDNCBI36
Celera5145,538,221 - 145,538,712RGD
Cytogenetic Map5q32UniSTS
HuRef5144,604,833 - 144,605,324UniSTS
PMC156747P3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,461,332 - 149,461,724UniSTSGRCh37
Build 365149,441,525 - 149,441,917RGDNCBI36
Celera5145,542,706 - 145,543,098RGD
Cytogenetic Map5q32UniSTS
HuRef5144,609,318 - 144,609,711UniSTS
PMC156747P4  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,462,401 - 149,462,493UniSTSGRCh37
Build 365149,442,594 - 149,442,686RGDNCBI36
Celera5145,543,775 - 145,543,867RGD
Cytogenetic Map5q32UniSTS
HuRef5144,610,388 - 144,610,480UniSTS
CSF1R_1770  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,432,865 - 149,433,652UniSTSGRCh37
Build 365149,413,058 - 149,413,845RGDNCBI36
Celera5145,514,248 - 145,515,036RGD
HuRef5144,580,815 - 144,581,603UniSTS
PDGFRB_1343  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,493,393 - 149,494,280UniSTSGRCh37
Build 365149,473,586 - 149,474,473RGDNCBI36
Celera5145,574,767 - 145,575,654RGD
HuRef5144,641,372 - 144,642,259UniSTS
WI-18300  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,493,868 - 149,493,997UniSTSGRCh37
Build 365149,474,061 - 149,474,190RGDNCBI36
Celera5145,575,242 - 145,575,371RGD
Cytogenetic Map5q32UniSTS
Cytogenetic Map5q33.1UniSTS
HuRef5144,641,847 - 144,641,976UniSTS
GeneMap99-GB4 RH Map5576.76UniSTS
Whitehead-RH Map5494.4UniSTS
D16S674  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371663,117,869 - 63,118,069UniSTSGRCh37
Build 361661,675,370 - 61,675,570RGDNCBI36
Celera1647,621,218 - 47,621,404RGD
Cytogenetic Map5q32UniSTS
HuRef5144,586,471 - 144,586,658UniSTS
HuRef1648,986,489 - 48,986,675UniSTS
WI-18889  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,494,296 - 149,494,421UniSTSGRCh37
Build 365149,474,489 - 149,474,614RGDNCBI36
Celera5145,575,670 - 145,575,795RGD
Cytogenetic Map5q32UniSTS
Cytogenetic Map5q33.1UniSTS
HuRef5144,642,275 - 144,642,400UniSTS
GeneMap99-GB4 RH Map345.2UniSTS
Whitehead-RH Map345.2UniSTS
D5S1865  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,433,013 - 149,433,133UniSTSGRCh37
Build 365149,413,206 - 149,413,326RGDNCBI36
Celera5145,514,396 - 145,514,516RGD
Cytogenetic Map5q32UniSTS
HuRef5144,580,963 - 144,581,083UniSTS
GeneMap99-GB4 RH Map5578.69UniSTS
Whitehead-RH Map5496.1UniSTS
D5S2619  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,433,468 - 149,433,562UniSTSGRCh37
Build 365149,413,661 - 149,413,755RGDNCBI36
Celera5145,514,852 - 145,514,946RGD
Cytogenetic Map5q32UniSTS
HuRef5144,581,419 - 144,581,513UniSTS
GeneMap99-G3 RH Map55554.0UniSTS
D5S2602  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,493,619 - 149,493,802UniSTSGRCh37
Build 365149,473,812 - 149,473,995RGDNCBI36
Celera5145,574,993 - 145,575,176RGD
Cytogenetic Map5q32UniSTS
Cytogenetic Map5q33.1UniSTS
HuRef5144,641,598 - 144,641,781UniSTS
GeneMap99-G3 RH Map55554.0UniSTS
Rpl7  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,474,157 - 149,474,401UniSTSGRCh37
Celera5145,555,525 - 145,555,769UniSTS
HuRef195,265,973 - 95,266,217UniSTS
MARC_12115-12116:1004707389:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375149,433,931 - 149,434,853UniSTSGRCh37
Celera5145,515,315 - 145,516,237UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2393 2788 2237 4874 1715 2276 5 617 1878 458 2201 7171 6389 33 3700 835 1710 1548 172 1


1 to 30 of 37 rows
RefSeq Transcripts NG_012303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_109969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB208819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC011382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI863331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM562096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM825705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ028933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD620053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS166288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA219251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DR001419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU826593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB505362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI638416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA312081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 37 rows

Ensembl Acc Id: ENST00000286301   ⟹   ENSP00000286301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,053,291 - 150,113,372 (-)Ensembl
Ensembl Acc Id: ENST00000502660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,076,904 - 150,086,554 (-)Ensembl
Ensembl Acc Id: ENST00000504875   ⟹   ENSP00000422212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,053,291 - 150,086,590 (-)Ensembl
Ensembl Acc Id: ENST00000509861
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,053,838 - 150,054,820 (-)Ensembl
Ensembl Acc Id: ENST00000511344   ⟹   ENSP00000421174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,080,052 - 150,113,372 (-)Ensembl
Ensembl Acc Id: ENST00000513609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,059,778 - 150,067,181 (-)Ensembl
Ensembl Acc Id: ENST00000515068   ⟹   ENSP00000427545
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,056,026 - 150,061,668 (-)Ensembl
Ensembl Acc Id: ENST00000515239
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,059,778 - 150,067,181 (-)Ensembl
Ensembl Acc Id: ENST00000543093   ⟹   ENSP00000445282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,070,540 - 150,086,427 (-)Ensembl
Ensembl Acc Id: ENST00000675795   ⟹   ENSP00000501699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5150,053,295 - 150,086,554 (-)Ensembl
RefSeq Acc Id: NM_001288705   ⟹   NP_001275634
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,053,295 - 150,086,554 (-)NCBI
HuRef5144,580,804 - 144,640,914 (-)NCBI
CHM1_15148,865,545 - 148,898,790 (-)NCBI
T2T-CHM13v2.05150,589,842 - 150,623,130 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001349736   ⟹   NP_001336665
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,053,295 - 150,092,622 (-)NCBI
T2T-CHM13v2.05150,589,842 - 150,629,196 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001375320   ⟹   NP_001362249
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,053,295 - 150,113,365 (-)NCBI
T2T-CHM13v2.05150,589,842 - 150,649,957 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001375321   ⟹   NP_001362250
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,053,295 - 150,113,365 (-)NCBI
T2T-CHM13v2.05150,589,842 - 150,649,957 (-)NCBI
Sequence:
RefSeq Acc Id: NM_005211   ⟹   NP_005202
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,053,295 - 150,113,365 (-)NCBI
GRCh375149,432,854 - 149,492,935 (-)ENTREZGENE
Build 365149,413,051 - 149,473,128 (-)NCBI Archive
HuRef5144,580,804 - 144,640,914 (-)ENTREZGENE
CHM1_15148,865,545 - 148,925,516 (-)NCBI
T2T-CHM13v2.05150,589,842 - 150,649,957 (-)NCBI
Sequence:
RefSeq Acc Id: NR_109969
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,053,295 - 150,086,554 (-)NCBI
HuRef5144,580,804 - 144,640,914 (-)NCBI
CHM1_15148,865,545 - 148,898,790 (-)NCBI
T2T-CHM13v2.05150,589,842 - 150,623,130 (-)NCBI
Sequence:
RefSeq Acc Id: NR_164679
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,053,295 - 150,113,365 (-)NCBI
T2T-CHM13v2.05150,589,842 - 150,649,957 (-)NCBI
Sequence:
1 to 30 of 31 rows
Protein RefSeqs NP_001275634 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336665 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362249 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362250 (Get FASTA)   NCBI Sequence Viewer  
  NP_005202 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA35834 (Get FASTA)   NCBI Sequence Viewer  
  AAA35848 (Get FASTA)   NCBI Sequence Viewer  
  AAA35849 (Get FASTA)   NCBI Sequence Viewer  
  AAA58421 (Get FASTA)   NCBI Sequence Viewer  
  AAA88039 (Get FASTA)   NCBI Sequence Viewer  
  AAB51235 (Get FASTA)   NCBI Sequence Viewer  
  AAB51696 (Get FASTA)   NCBI Sequence Viewer  
  AAH47521 (Get FASTA)   NCBI Sequence Viewer  
  AAI29940 (Get FASTA)   NCBI Sequence Viewer  
  ACF47629 (Get FASTA)   NCBI Sequence Viewer  
  BAD92056 (Get FASTA)   NCBI Sequence Viewer  
  BAG57697 (Get FASTA)   NCBI Sequence Viewer  
  BAG65300 (Get FASTA)   NCBI Sequence Viewer  
  CAA27300 (Get FASTA)   NCBI Sequence Viewer  
  CAJ32237 (Get FASTA)   NCBI Sequence Viewer  
  CAV32774 (Get FASTA)   NCBI Sequence Viewer  
  CBX55881 (Get FASTA)   NCBI Sequence Viewer  
  CCA65436 (Get FASTA)   NCBI Sequence Viewer  
  EAW61749 (Get FASTA)   NCBI Sequence Viewer  
  EAW61750 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000286301
  ENSP00000286301.3
  ENSP00000445282.1
  ENSP00000501699
  ENSP00000501699.1
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RefSeq Acc Id: NP_005202   ⟸   NM_005211
- Peptide Label: isoform a precursor
- UniProtKB: Q6LDY4 (UniProtKB/Swiss-Prot),   Q6LDW5 (UniProtKB/Swiss-Prot),   D3DQG2 (UniProtKB/Swiss-Prot),   B5A955 (UniProtKB/Swiss-Prot),   Q86VW7 (UniProtKB/Swiss-Prot),   P07333 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001275634   ⟸   NM_001288705
- Peptide Label: isoform a precursor
- UniProtKB: Q6LDY4 (UniProtKB/Swiss-Prot),   Q6LDW5 (UniProtKB/Swiss-Prot),   D3DQG2 (UniProtKB/Swiss-Prot),   B5A955 (UniProtKB/Swiss-Prot),   Q86VW7 (UniProtKB/Swiss-Prot),   P07333 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001336665   ⟸   NM_001349736
- Peptide Label: isoform a precursor
- UniProtKB: Q6LDY4 (UniProtKB/Swiss-Prot),   Q6LDW5 (UniProtKB/Swiss-Prot),   P07333 (UniProtKB/Swiss-Prot),   D3DQG2 (UniProtKB/Swiss-Prot),   B5A955 (UniProtKB/Swiss-Prot),   Q86VW7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001362250   ⟸   NM_001375321
- Peptide Label: isoform b
RefSeq Acc Id: NP_001362249   ⟸   NM_001375320
- Peptide Label: isoform a precursor
- UniProtKB: Q6LDY4 (UniProtKB/Swiss-Prot),   Q6LDW5 (UniProtKB/Swiss-Prot),   P07333 (UniProtKB/Swiss-Prot),   D3DQG2 (UniProtKB/Swiss-Prot),   B5A955 (UniProtKB/Swiss-Prot),   Q86VW7 (UniProtKB/Swiss-Prot)
Name Modeler Protein Id AA Range Protein Structure
AF-P07333-F1-model_v2 AlphaFold P07333 1-972 view protein structure

RGD ID:6812692
Promoter ID:HG_ACW:65887
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:CSF1R.HAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 365149,413,951 - 149,414,451 (-)MPROMDB
RGD ID:6812691
Promoter ID:HG_ACW:65890
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:CSF1R.FAPR07,   CSF1R.GAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 365149,426,521 - 149,427,021 (-)MPROMDB
RGD ID:6871236
Promoter ID:EPDNEW_H8783
Type:initiation region
Name:CSF1R_1
Description:colony stimulating factor 1 receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8784  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,086,554 - 150,086,614EPDNEW
RGD ID:6871238
Promoter ID:EPDNEW_H8784
Type:initiation region
Name:CSF1R_2
Description:colony stimulating factor 1 receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8783  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385150,113,365 - 150,113,425EPDNEW


1 to 40 of 67 rows
Database
Acc Id
Source(s)
COSMIC CSF1R COSMIC
Ensembl Genes ENSG00000182578 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000286301 ENTREZGENE
  ENST00000286301.7 UniProtKB/Swiss-Prot
  ENST00000504875 ENTREZGENE
  ENST00000543093.1 UniProtKB/Swiss-Prot
  ENST00000675795 ENTREZGENE
  ENST00000675795.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
GTEx ENSG00000182578 GTEx
HGNC ID HGNC:2433 ENTREZGENE
Human Proteome Map CSF1R Human Proteome Map
InterPro CSF-1_receptor UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Immunoglobulin UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  RTK UniProtKB/Swiss-Prot
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot
  Tyr_kinase_AS UniProtKB/Swiss-Prot
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot
  Tyr_kinase_rcpt_3_CS UniProtKB/Swiss-Prot
KEGG Report hsa:1436 UniProtKB/Swiss-Prot
NCBI Gene 1436 ENTREZGENE
OMIM 164770 OMIM
PANTHER MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR UniProtKB/Swiss-Prot
  TYROSINE-PROTEIN KINASE RECEPTOR UniProtKB/Swiss-Prot
Pfam Ig_3 UniProtKB/Swiss-Prot
  PF00047 UniProtKB/Swiss-Prot
  Pkinase_Tyr UniProtKB/Swiss-Prot
PharmGKB CSF1R RGD, PharmGKB
PIRSF CSF-1_receptor UniProtKB/Swiss-Prot
  TyrPK_CSF1-R UniProtKB/Swiss-Prot
1 to 40 of 67 rows