CSF1R (colony stimulating factor 1 receptor) - Rat Genome Database

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Gene: CSF1R (colony stimulating factor 1 receptor) Pan paniscus
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Symbol: CSF1R
Name: colony stimulating factor 1 receptor
RGD ID: 11783153
Description: ENCODES a protein that exhibits cytokine binding (ortholog); macrophage colony-stimulating factor receptor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN axon guidance (ortholog); cell population proliferation (ortholog); cell-cell junction maintenance (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); acute myeloid leukemia (ortholog); adult-onset leukoencephalopathy with axonal spheroids and pigmented glia (ortholog); FOUND IN cell surface (ortholog); CSF1-CSF1R complex (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: macrophage colony-stimulating factor 1 receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15151,483,948 - 151,543,128 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,483,572 - 151,517,415 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05145,478,725 - 145,537,858 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
axon guidance  (ISO)
cell population proliferation  (ISO)
cell-cell junction maintenance  (ISO)
cellular response to cytokine stimulus  (ISO)
cellular response to macrophage colony-stimulating factor stimulus  (ISO)
cytokine-mediated signaling pathway  (ISO)
dentate gyrus development  (ISO)
forebrain neuron differentiation  (ISO)
hemopoiesis  (ISO)
macrophage colony-stimulating factor signaling pathway  (ISO)
microglia development  (ISO)
microglial cell proliferation  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of cell population proliferation  (ISO)
neuron projection extension  (ISO)
olfactory bulb development  (ISO)
osteoclast differentiation  (ISO)
peptidyl-tyrosine phosphorylation  (ISO)
phosphatidylinositol metabolic process  (ISO)
phosphatidylinositol-mediated signaling  (ISO)
positive regulation by host of viral process  (ISO)
positive regulation of cell migration  (ISO)
positive regulation of cell motility  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of chemokine production  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of macrophage chemotaxis  (ISO)
positive regulation of macrophage proliferation  (ISO)
positive regulation of osteoclast differentiation  (ISO)
positive regulation of protein phosphorylation  (ISO)
positive regulation of protein serine/threonine kinase activity  (ISO)
positive regulation of protein tyrosine kinase activity  (ISO)
positive regulation of tyrosine phosphorylation of STAT protein  (ISO)
protein autophosphorylation  (ISO)
regulation of actin cytoskeleton reorganization  (ISO)
regulation of bone resorption  (ISO)
regulation of cell shape  (ISO)
regulation of mononuclear cell proliferation  (ISO)
response to ischemia  (ISO)
ruffle organization  (ISO)
skeletal muscle tissue development  (ISO)
transmembrane receptor protein tyrosine kinase signaling pathway  (ISO)

Cellular Component

References

Genomics

Comparative Map Data
CSF1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15151,483,948 - 151,543,128 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,483,572 - 151,517,415 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05145,478,725 - 145,537,858 (-)NCBIMhudiblu_PPA_v0panPan3
CSF1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5150,053,291 - 150,113,372 (-)EnsemblGRCh38hg38GRCh38
GRCh385150,053,295 - 150,113,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375149,432,858 - 149,492,928 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,413,051 - 149,473,128 (-)NCBINCBI36hg18NCBI36
Build 345149,413,050 - 149,473,128NCBI
Celera5145,514,237 - 145,574,309 (-)NCBI
Cytogenetic Map5q32NCBI
HuRef5144,580,804 - 144,640,914 (-)NCBIHuRef
CHM1_15148,865,545 - 148,925,516 (-)NCBICHM1_1
Csf1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,238,644 - 61,264,211 (+)NCBIGRCm39mm39
GRCm39 Ensembl1861,233,670 - 61,265,221 (+)Ensembl
GRCm381861,105,572 - 61,131,139 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,100,598 - 61,132,149 (+)EnsemblGRCm38mm10GRCm38
MGSCv371861,265,226 - 61,290,793 (+)NCBIGRCm37mm9NCBIm37
MGSCv361861,230,941 - 61,256,506 (+)NCBImm8
Celera1862,392,678 - 62,417,929 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
Csf1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21854,546,673 - 54,590,418 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1854,546,659 - 54,590,415 (+)Ensembl
Rnor_6.01856,414,493 - 56,458,300 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,414,488 - 56,458,300 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,662,670 - 55,689,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41857,080,324 - 57,107,295 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1852,716,221 - 52,742,736 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Csf1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,434,453 - 4,461,751 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,434,486 - 4,462,505 (+)NCBIChiLan1.0ChiLan1.0
CSF1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,980,699 - 59,010,683 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,980,788 - 59,010,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,746,695 - 58,776,657 (+)NCBI
ROS_Cfam_1.0459,461,238 - 59,491,183 (+)NCBI
UMICH_Zoey_3.1459,249,977 - 59,279,943 (+)NCBI
UNSW_CanFamBas_1.0459,364,574 - 59,394,530 (+)NCBI
UU_Cfam_GSD_1.0459,895,615 - 59,925,571 (+)NCBI
Csf1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213143,324,957 - 143,353,222 (+)NCBI
SpeTri2.0NW_0049365044,898,947 - 4,927,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSF1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,102,138 - 151,147,634 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,102,138 - 151,130,311 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22157,855,536 - 157,882,913 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSF1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12352,663,290 - 52,723,652 (-)NCBI
ChlSab1.1 Ensembl2352,664,076 - 52,697,304 (-)Ensembl
Vero_WHO_p1.0NW_02366603424,993,437 - 25,053,747 (+)NCBI
Csf1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247749,363,156 - 9,391,939 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000060917   ⟹   ENSPPAP00000038014
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5151,483,572 - 151,517,415 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000060928   ⟹   ENSPPAP00000038025
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5151,488,181 - 151,511,710 (-)Ensembl
RefSeq Acc Id: XM_003829029   ⟹   XP_003829077
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.15151,483,948 - 151,543,128 (-)NCBI
Mhudiblu_PPA_v05145,478,725 - 145,537,858 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024928736   ⟹   XP_024784504
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.15151,483,948 - 151,522,228 (-)NCBI
Mhudiblu_PPA_v05145,478,725 - 145,537,851 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003829077 (Get FASTA)   NCBI Sequence Viewer  
  XP_024784504 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003829077   ⟸   XM_003829029
- Sequence:
RefSeq Acc Id: XP_024784504   ⟸   XM_024928736
- Sequence:
RefSeq Acc Id: ENSPPAP00000038025   ⟸   ENSPPAT00000060928
RefSeq Acc Id: ENSPPAP00000038014   ⟸   ENSPPAT00000060917


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041729 Ensembl, ENTREZGENE
NCBI Gene CSF1R ENTREZGENE