Pex14 (peroxisomal biogenesis factor 14) - Rat Genome Database

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Gene: Pex14 (peroxisomal biogenesis factor 14) Rattus norvegicus
Analyze
Symbol: Pex14
Name: peroxisomal biogenesis factor 14
RGD ID: 68336
Description: Enables protein-macromolecule adaptor activity. Involved in protein import into peroxisome matrix, docking. Located in peroxisomal membrane. Part of protein-containing complex. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 13A. Orthologous to human PEX14 (peroxisomal biogenesis factor 14); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: peroxin-14; peroxisomal membrane anchor protein; peroxisomal membrane anchor protein PEX14; peroxisomal membrane protein PEX14; PTS1 receptor-docking protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85164,682,876 - 164,819,352 (-)NCBIGRCr8
mRatBN7.25159,399,776 - 159,536,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,399,776 - 159,536,272 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,116,476 - 162,252,953 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,938,080 - 164,073,727 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,894,450 - 164,030,099 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05165,782,895 - 165,918,445 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,782,895 - 165,918,445 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05169,433,225 - 169,568,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,038,317 - 166,174,652 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,048,504 - 166,184,840 (-)NCBI
Celera5157,671,940 - 157,807,205 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
fibrillar center  (IEA,ISO)
peroxisomal importomer complex  (IBA)
peroxisomal membrane  (IBA,IDA,IEA,ISO,TAS)
peroxisome  (IDA,ISO,ISS)
protein-containing complex  (IDA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Proteomic analysis of rat liver peroxisome: presence of peroxisome-specific isozyme of Lon protease. Kikuchi M, etal., J Biol Chem. 2004 Jan 2;279(1):421-8. Epub 2003 Oct 15.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Mammalian Pex14p: membrane topology and characterisation of the Pex14p-Pex14p interaction. Oliveira ME, etal., Biochim Biophys Acta. 2002 Dec 23;1567(1-2):13-22. doi: 10.1016/s0005-2736(02)00635-1.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. Characterization of the mammalian peroxisomal import machinery: Pex2p, Pex5p, Pex12p, and Pex14p are subunits of the same protein assembly. Reguenga C, etal., J Biol Chem. 2001 Aug 10;276(32):29935-42. Epub 2001 Jun 7.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. The peroxin Pex14p. cDNA cloning by functional complementation on a Chinese hamster ovary cell mutant, characterization, and functional analysis. Shimizu N, etal., J Biol Chem 1999 Apr 30;274(18):12593-604.
14. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15. Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p. Su JR, etal., Proc Natl Acad Sci U S A. 2009 Jan 13;106(2):417-21. doi: 10.1073/pnas.0808681106. Epub 2009 Jan 2.
16. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:10022913   PMID:11669066   PMID:11863372   PMID:12096124   PMID:15026142   PMID:15146459   PMID:16449325   PMID:17881773   PMID:18346465   PMID:19197237   PMID:19584060   PMID:19946888  
PMID:21375735   PMID:21525035   PMID:21976670   PMID:29476059   PMID:30414318  


Genomics

Comparative Map Data
Pex14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85164,682,876 - 164,819,352 (-)NCBIGRCr8
mRatBN7.25159,399,776 - 159,536,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,399,776 - 159,536,272 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,116,476 - 162,252,953 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,938,080 - 164,073,727 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,894,450 - 164,030,099 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05165,782,895 - 165,918,445 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,782,895 - 165,918,445 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05169,433,225 - 169,568,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,038,317 - 166,174,652 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,048,504 - 166,184,840 (-)NCBI
Celera5157,671,940 - 157,807,205 (-)NCBICelera
Cytogenetic Map5q36NCBI
PEX14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38110,474,950 - 10,630,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl110,472,288 - 10,630,758 (+)EnsemblGRCh38hg38GRCh38
GRCh37110,535,007 - 10,690,815 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36110,457,590 - 10,613,402 (+)NCBINCBI36Build 36hg18NCBI36
Build 34110,469,284 - 10,625,079NCBI
Celera19,646,407 - 9,802,209 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef19,688,564 - 9,844,851 (+)NCBIHuRef
CHM1_1110,522,760 - 10,678,540 (+)NCBICHM1_1
T2T-CHM13v2.0110,018,554 - 10,174,355 (+)NCBIT2T-CHM13v2.0
Pex14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,044,992 - 149,184,300 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,044,992 - 149,184,333 (-)EnsemblGRCm39 Ensembl
GRCm384148,960,535 - 149,099,843 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,960,535 - 149,099,876 (-)EnsemblGRCm38mm10GRCm38
MGSCv374148,334,644 - 148,473,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364147,804,335 - 147,943,612 (-)NCBIMGSCv36mm8
Celera4151,224,014 - 151,367,395 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.87NCBI
Pex14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554862,980,700 - 3,129,721 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554862,981,026 - 3,129,721 (-)NCBIChiLan1.0ChiLan1.0
PEX14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21217,596,325 - 217,752,497 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11216,242,429 - 216,398,429 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019,234,928 - 9,391,086 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1110,459,863 - 10,614,187 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl110,459,884 - 10,614,187 (+)Ensemblpanpan1.1panPan2
PEX14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1285,379,378 - 85,389,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,981,475 - 81,990,564 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0286,111,196 - 86,124,207 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl286,114,196 - 86,124,084 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1282,862,365 - 82,871,454 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0283,864,867 - 83,873,956 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,927,777 - 84,936,866 (-)NCBIUU_Cfam_GSD_1.0
LOC101959362
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,780,359 - 33,977,224 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366234,265,559 - 4,289,590 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049366234,313,147 - 4,462,528 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366234,313,186 - 4,462,462 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,737,905 - 70,872,072 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,737,871 - 70,872,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,670,674 - 64,805,059 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PEX14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,152,514 - 121,309,888 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20121,152,498 - 121,309,919 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605425,065,864 - 25,223,768 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248182,082,709 - 2,224,899 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248182,082,709 - 2,224,235 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pex14
507 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:70
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000018167
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

Markers in Region
SGC38258  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,511,471 - 159,511,728 (+)MAPPERmRatBN7.2
Rnor_6.05165,893,826 - 165,894,082NCBIRnor6.0
Rnor_5.05169,544,114 - 169,544,370UniSTSRnor5.0
RGSC_v3.45166,149,207 - 166,149,463UniSTSRGSC3.4
Celera5157,782,500 - 157,782,756UniSTS
Cytogenetic Map5q36UniSTS
RH130185  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,399,852 - 159,400,006 (+)MAPPERmRatBN7.2
Rnor_6.05165,782,970 - 165,783,123NCBIRnor6.0
Rnor_5.05169,433,300 - 169,433,453UniSTSRnor5.0
RGSC_v3.45166,038,392 - 166,038,545UniSTSRGSC3.4
Celera5157,672,015 - 157,672,168UniSTS
RH 3.4 Map51107.7UniSTS
Cytogenetic Map5q36UniSTS
BI288100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,507,383 - 159,507,548 (+)MAPPERmRatBN7.2
Rnor_6.05165,889,738 - 165,889,902NCBIRnor6.0
Rnor_5.05169,540,026 - 169,540,190UniSTSRnor5.0
RGSC_v3.45166,145,119 - 166,145,283UniSTSRGSC3.4
Celera5157,778,412 - 157,778,576UniSTS
RH 3.4 Map51108.2UniSTS
Cytogenetic Map5q36UniSTS
BE115573  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,402,171 - 159,402,347 (+)MAPPERmRatBN7.2
Rnor_6.05165,785,289 - 165,785,464NCBIRnor6.0
Rnor_5.05169,435,619 - 169,435,794UniSTSRnor5.0
RGSC_v3.45166,040,711 - 166,040,886UniSTSRGSC3.4
Celera5157,674,334 - 157,674,509UniSTS
RH 3.4 Map51110.6UniSTS
Cytogenetic Map5q36UniSTS
RH139451  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,534,474 - 159,534,600 (+)MAPPERmRatBN7.2
Rnor_6.05165,916,660 - 165,916,785NCBIRnor6.0
Rnor_5.05169,566,841 - 169,566,966UniSTSRnor5.0
RGSC_v3.45166,172,867 - 166,172,992UniSTSRGSC3.4
Celera5157,805,420 - 157,805,545UniSTS
RH 3.4 Map51107.9UniSTS
Cytogenetic Map5q36UniSTS
AI410845  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,410,761 - 159,410,955 (+)MAPPERmRatBN7.2
Rnor_6.05165,793,879 - 165,794,072NCBIRnor6.0
Rnor_5.05169,444,209 - 169,444,402UniSTSRnor5.0
RGSC_v3.45166,049,301 - 166,049,494UniSTSRGSC3.4
Celera5157,682,924 - 157,683,117UniSTS
RH 3.4 Map51110.7UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 57 41 11 41 3 74 34 41 11
Low 9 8 8 8 1 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000018167   ⟹   ENSRNOP00000018167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,399,780 - 159,536,272 (-)Ensembl
Rnor_6.0 Ensembl5165,782,895 - 165,918,445 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095595   ⟹   ENSRNOP00000086214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,399,776 - 159,462,340 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105488   ⟹   ENSRNOP00000087114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,399,776 - 159,463,053 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108389   ⟹   ENSRNOP00000086588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,399,776 - 159,479,852 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113697   ⟹   ENSRNOP00000078609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,399,776 - 159,479,732 (-)Ensembl
RefSeq Acc Id: NM_172063   ⟹   NP_742060
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,682,878 - 164,819,352 (-)NCBI
mRatBN7.25159,399,778 - 159,536,260 (-)NCBI
Rnor_6.05165,782,895 - 165,918,445 (-)NCBI
Rnor_5.05169,433,225 - 169,568,626 (-)NCBI
RGSC_v3.45166,038,317 - 166,174,652 (-)RGD
Celera5157,671,940 - 157,807,205 (-)RGD
Sequence:
RefSeq Acc Id: XM_039110708   ⟹   XP_038966636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,682,876 - 164,692,739 (-)NCBI
mRatBN7.25159,399,776 - 159,409,649 (-)NCBI
RefSeq Acc Id: NP_742060   ⟸   NM_172063
- UniProtKB: Q9Z2Z4 (UniProtKB/Swiss-Prot),   Q642G4 (UniProtKB/Swiss-Prot),   A6IU93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000018167   ⟸   ENSRNOT00000018167
RefSeq Acc Id: XP_038966636   ⟸   XM_039110708
- Peptide Label: isoform X1
- UniProtKB: A6IU94 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078609   ⟸   ENSRNOT00000113697
RefSeq Acc Id: ENSRNOP00000086588   ⟸   ENSRNOT00000108389
RefSeq Acc Id: ENSRNOP00000087114   ⟸   ENSRNOT00000105488
RefSeq Acc Id: ENSRNOP00000086214   ⟸   ENSRNOT00000095595
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q642G4-F1-model_v2 AlphaFold Q642G4 1-376 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694267
Promoter ID:EPDNEW_R4792
Type:multiple initiation site
Name:Pex14_1
Description:peroxisomal biogenesis factor 14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05165,918,442 - 165,918,502EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68336 AgrOrtholog
BioCyc Gene G2FUF-39145 BioCyc
Ensembl Genes ENSRNOG00000013498 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055022387 UniProtKB/Swiss-Prot
  ENSRNOG00060027265 UniProtKB/Swiss-Prot
  ENSRNOG00065010914 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018167 ENTREZGENE
  ENSRNOT00000018167.5 UniProtKB/Swiss-Prot
  ENSRNOT00000095595.1 UniProtKB/TrEMBL
  ENSRNOT00000105488.1 UniProtKB/TrEMBL
  ENSRNOT00000108389.1 UniProtKB/TrEMBL
  ENSRNOT00000113697.1 UniProtKB/TrEMBL
  ENSRNOT00055038516 UniProtKB/Swiss-Prot
  ENSRNOT00060047482 UniProtKB/Swiss-Prot
  ENSRNOT00065017774 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191447 IMAGE-MGC_LOAD
InterPro PEX14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pex14_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64460 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93110 IMAGE-MGC_LOAD
NCBI Gene 64460 ENTREZGENE
PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23058 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pex14_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pex14 PhenoGen
RatGTEx ENSRNOG00000013498 RatGTEx
  ENSRNOG00055022387 RatGTEx
  ENSRNOG00060027265 RatGTEx
  ENSRNOG00065010914 RatGTEx
TIGR TC205215
UniProt A0A8I5ZLL8_RAT UniProtKB/TrEMBL
  A0A8I6A362_RAT UniProtKB/TrEMBL
  A0A8I6A3S0_RAT UniProtKB/TrEMBL
  A0A8I6A3Y4_RAT UniProtKB/TrEMBL
  A6IU93 ENTREZGENE, UniProtKB/TrEMBL
  A6IU94 ENTREZGENE, UniProtKB/TrEMBL
  PEX14_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9Z2Z4 ENTREZGENE
UniProt Secondary Q9Z2Z4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Pex14  peroxisomal biogenesis factor 14       Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization integral membrane protein localized to peroxisomes 68287
gene_homology has 24% amino acid identity with S. cerevisiae Pex14p 68287