Cd300cl1 (CD300c molecule like 1) - Rat Genome Database

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Gene: Cd300cl1 (CD300c molecule like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Cd300cl1
Name: CD300c molecule like 1
RGD ID: 6502330
Description: Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07030793.1; CMRF-35-like molecule 4; CMRF35-like molecule; CMRF35-like molecule-like; LOC100909671
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,616,785 - 100,625,309 (-)NCBIGRCr8
mRatBN7.210100,117,788 - 100,126,304 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,121,682 - 100,126,092 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010104,917,859 - 104,921,953 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,917,862 - 104,921,866 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,363,771 - 103,367,860 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1098,699,116 - 98,703,840 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd300cl1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cd300cl1Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Cd300cl1
158 total Variants


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
10 103364915 103364916 C T snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), FHL/EurMcwi (KNAW), KFRS3B/Kyo (KyushuU), FHH/EurMcwi (KNAW), BUF/N (KNAW) View more Information


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
10 104920807 104920808 G A snv FHH/EurMcwi (MCW) View more Information
10 104921051 104921052 G A snv BXH3/CubMcwi (2020) View more Information


1 to 10 of 61 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1092238497101012337Rat

1 to 10 of 61 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 25 33 65 65 35 25 35 6 145 70 14 24 22 30


RefSeq Transcripts XM_003750957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000073646   ⟹   ENSRNOP00000064999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10100,121,682 - 100,126,092 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077158   ⟹   ENSRNOP00000073432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl10104,917,862 - 104,921,866 (-)Ensembl
RefSeq Acc Id: XM_003750957   ⟹   XP_003751005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,616,785 - 100,625,309 (-)NCBI
mRatBN7.210100,117,788 - 100,126,304 (-)NCBI
Rnor_6.010104,917,859 - 104,921,953 (-)NCBI
Rnor_5.010103,363,771 - 103,367,860 (+)NCBI
Sequence:
Protein RefSeqs XP_003751005 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064999.3
  ENSRNOP00000065288
  ENSRNOP00000065288.3
RefSeq Acc Id: XP_003751005   ⟸   XM_003750957
- UniProtKB: M0R6E9 (UniProtKB/TrEMBL),   M0R768 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073432   ⟸   ENSRNOT00000077158
Ensembl Acc Id: ENSRNOP00000064999   ⟸   ENSRNOT00000073646
Ig-like

Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K5H9-F1-model_v2 AlphaFold A0A0G2K5H9 1-174 view protein structure
AF-M0R6E9-F1-model_v2 AlphaFold M0R6E9 1-256 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-22716 BioCyc
Ensembl Genes ENSRNOG00000045888 UniProtKB/TrEMBL
  ENSRNOG00000046121 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000057734 Ensembl
  ENSRNOG00000059563 ENTREZGENE
Ensembl Transcript ENSRNOT00000073646.3 UniProtKB/TrEMBL
  ENSRNOT00000075706 ENTREZGENE
  ENSRNOT00000075706.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD300_family_receptors UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene LOC100909671 ENTREZGENE
PANTHER POLYMERIC-IMMUNOGLOBULIN RECEPTOR UniProtKB/TrEMBL
  PROTEIN CD300H UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Cd300cl1 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000045888 RatGTEx
  ENSRNOG00000046121 RatGTEx
  ENSRNOG00000057734 RatGTEx
  ENSRNOG00000059563 RatGTEx
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt M0R6E9 ENTREZGENE, UniProtKB/TrEMBL
  M0R768 ENTREZGENE, UniProtKB/TrEMBL
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cd300cl1  CD300c molecule like 1  LOC100909671  CMRF35-like molecule-like  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC100909671  CMRF35-like molecule-like  AABR07030793.1    Data merged from RGD:15004965 737654 PROVISIONAL
2019-11-08 AABR07030793.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2012-07-05 LOC100909671  CMRF35-like molecule-like      Symbol and Name status set to provisional 70820 PROVISIONAL