Sumo2 (small ubiquitin-like modifier 2) - Rat Genome Database

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Gene: Sumo2 (small ubiquitin-like modifier 2) Rattus norvegicus
Analyze
Symbol: Sumo2 (Ensembl: Jpt1)
Name: small ubiquitin-like modifier 2 (Ensembl:Jupiter microtubule associated homolog 1)
RGD ID: 621761
Description: Enables nuclear retinoid X receptor binding activity. Involved in several processes, including negative regulation of DNA-templated transcription; positive regulation of protein sumoylation; and protein sumoylation. Located in nucleus. Orthologous to human SUMO2 (small ubiquitin like modifier 2); PARTICIPATES IN RNA transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC690244; MGC72702; MGC93211; sentrin-2; similar to SMT3 suppressor of mif two 3 homolog 2; small ubiquitin-related modifier 2; SMT3 homolog 2; SMT3 suppressor of mif two 3 homolog 2; SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae); SMT3 suppressor of mif two 3 homolog 2 (yeast); Smt3A; Smt3h2; SUMO-2; ubiquitin-like protein SMT3A; ubiquitin-like protein SMT3B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Sumo4  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210100,771,941 - 100,784,503 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,686,797 - 100,784,513 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,831,894 - 105,844,470 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.010105,294,964 - 105,307,540 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.010100,692,910 - 100,705,469 (-)NCBIRnor_WKY
Rnor_6.010104,085,401 - 104,097,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,086,002 - 104,097,812 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,184,388 - 104,195,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,608,097 - 105,620,455 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1099,346,621 - 99,359,172 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IBA,IDA,IEA,ISO)
PML body  (ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The cDNA cloning and molecular evolution of reptile and pigeon lactate dehydrogenase isozymes. Mannen H, etal., Mol Biol Evol 1997 Nov;14(11):1081-7.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Gene expression and cell growth are modified by silencing SUMO2 and SUMO3 expression. Yang W and Paschen W, Biochem Biophys Res Commun. 2009 Apr 24;382(1):215-8. doi: 10.1016/j.bbrc.2009.03.013. Epub 2009 Mar 9.
11. Small ubiquitin-like modifier-2 modification of retinoic acid receptor-alpha regulates its subcellular localization and transcriptional activity. Zhu L, etal., Endocrinology. 2009 Dec;150(12):5586-95. doi: 10.1210/en.2009-0868. Epub 2009 Oct 22.
Additional References at PubMed
PMID:15277470   PMID:15489334   PMID:15767674   PMID:17081986   PMID:17696781   PMID:18167501   PMID:18408734   PMID:18644859   PMID:20075418   PMID:21330375   PMID:21518833   PMID:21931855  
PMID:21965678   PMID:22406621   PMID:22681889   PMID:22891650   PMID:24105744   PMID:24971350  


Genomics

Comparative Map Data
Sumo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210100,771,941 - 100,784,503 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,686,797 - 100,784,513 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,831,894 - 105,844,470 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.010105,294,964 - 105,307,540 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.010100,692,910 - 100,705,469 (-)NCBIRnor_WKY
Rnor_6.010104,085,401 - 104,097,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,086,002 - 104,097,812 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,184,388 - 104,195,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,608,097 - 105,620,455 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1099,346,621 - 99,359,172 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
SUMO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,165,586 - 75,182,959 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1775,165,586 - 75,182,959 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,161,681 - 73,179,054 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,675,420 - 70,690,693 (-)NCBINCBI36Build 36hg18NCBI36
Build 341770,675,419 - 70,690,693NCBI
Celera1769,756,196 - 69,771,477 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,573,023 - 68,588,319 (-)NCBIHuRef
CHM1_11773,228,330 - 73,243,802 (-)NCBICHM1_1
T2T-CHM13v2.01776,057,065 - 76,074,452 (-)NCBIT2T-CHM13v2.0
Sumo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,413,935 - 115,427,056 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,413,928 - 115,427,102 (-)EnsemblGRCm39 Ensembl
GRCm3811115,523,109 - 115,536,230 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,523,102 - 115,536,276 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,384,423 - 115,397,544 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,412,880 - 116,426,015 (-)NCBIMGSCv36mm8
MGSCv3611115,339,199 - 115,352,320 (-)NCBIMGSCv36mm8
Celera11127,289,555 - 127,301,144 (-)NCBICelera
Cytogenetic Map11E2NCBI
Sumo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,045,415 - 2,065,863 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,045,277 - 2,066,023 (-)NCBIChiLan1.0ChiLan1.0
SUMO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11774,676,897 - 74,683,990 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01769,115,433 - 69,130,065 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SUMO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,298,315 - 5,311,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,298,340 - 5,311,184 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,977,248 - 5,990,106 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,968,618 - 5,981,517 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,968,617 - 5,981,522 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,007,031 - 6,019,893 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,117,312 - 6,130,163 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,177,319 - 6,190,161 (+)NCBIUU_Cfam_GSD_1.0
Sumo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,925,294 - 5,942,343 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936594469,616 - 484,375 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUMO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,116,606 - 6,130,350 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,116,694 - 6,130,089 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,079,142 - 6,092,538 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUMO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,479,399 - 46,495,591 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,479,406 - 46,496,114 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,253,281 - 17,269,592 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sumo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248014,998,271 - 5,009,492 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sumo2
61 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000004867
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)1090910316107211142Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1092238497101012337Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 16 2
Medium 3 43 57 41 19 41 8 11 58 35 39 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000004862   ⟹   ENSRNOP00000004862
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10100,744,467 - 100,762,518 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000004867   ⟹   ENSRNOP00000004867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10100,772,542 - 100,784,513 (-)Ensembl
Rnor_6.0 Ensembl10104,086,002 - 104,097,812 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000049609   ⟹   ENSRNOP00000044856
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10100,763,800 - 100,784,474 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115704   ⟹   ENSRNOP00000093600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10100,763,800 - 100,783,888 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119507   ⟹   ENSRNOP00000096769
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10100,686,797 - 100,784,490 (-)Ensembl
RefSeq Acc Id: NM_133594   ⟹   NP_598278
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210100,771,941 - 100,784,503 (-)NCBI
Rnor_6.010104,085,401 - 104,097,983 (-)NCBI
Rnor_5.010104,184,388 - 104,195,497 (+)NCBI
RGSC_v3.410105,608,097 - 105,620,455 (-)RGD
Celera1099,346,621 - 99,359,172 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_598278 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58446 (Get FASTA)   NCBI Sequence Viewer  
  AAH78746 (Get FASTA)   NCBI Sequence Viewer  
  AAL40175 (Get FASTA)   NCBI Sequence Viewer  
  P61959 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_598278   ⟸   NM_133594
- UniProtKB: P61959 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000004867   ⟸   ENSRNOT00000004867
RefSeq Acc Id: ENSRNOP00000093600   ⟸   ENSRNOT00000115704
RefSeq Acc Id: ENSRNOP00000004862   ⟸   ENSRNOT00000004862
RefSeq Acc Id: ENSRNOP00000096769   ⟸   ENSRNOT00000119507
RefSeq Acc Id: ENSRNOP00000044856   ⟸   ENSRNOT00000049609
Protein Domains
Rad60-SLD   Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P61959-F1-model_v2 AlphaFold P61959 1-95 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621761 AgrOrtholog
BioCyc Gene G2FUF-22671 BioCyc
Ensembl Genes ENSRNOG00000003661 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000003670 Ensembl
Ensembl Protein ENSRNOP00000004862.4 UniProtKB/TrEMBL
  ENSRNOP00000004867.5 UniProtKB/TrEMBL
  ENSRNOP00000044856 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000093600.1 UniProtKB/TrEMBL
  ENSRNOP00000096769.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004862.6 UniProtKB/TrEMBL
  ENSRNOT00000004867.7 UniProtKB/TrEMBL
  ENSRNOT00000049609 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000115704.1 UniProtKB/TrEMBL
  ENSRNOT00000119507.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921523 IMAGE-MGC_LOAD
  IMAGE:7125132 IMAGE-MGC_LOAD
InterPro JUPITER UniProtKB/TrEMBL
  Rad60/SUMO-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report rno:690244 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72702 IMAGE-MGC_LOAD
  MGC:93211 IMAGE-MGC_LOAD
NCBI Gene 690244 ENTREZGENE
PANTHER PTHR34930 UniProtKB/TrEMBL
Pfam JUPITER UniProtKB/TrEMBL
  Rad60-SLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sumo2 PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AX97_RAT UniProtKB/TrEMBL
  A0A8I6GM84_RAT UniProtKB/TrEMBL
  A0A8L2Q2G1_RAT UniProtKB/TrEMBL
  F1M2K3_RAT UniProtKB/TrEMBL
  P61959 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P55855 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-12 Sumo2  small ubiquitin-like modifier 2  Sumo2  SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-20 Sumo2  SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)  Sumo2  SMT3 suppressor of mif two 3 homolog 2 (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-08 Sumo2  SMT3 suppressor of mif two 3 homolog 2 (yeast)  LOC690244  similar to SMT3 suppressor of mif two 3 homolog 2  Data Merged 737654 APPROVED
2006-11-19 LOC690244  similar to SMT3 suppressor of mif two 3 homolog 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Sumo2  SMT3 suppressor of mif two 3 homolog 2 (yeast)  Smt3h2    Symbol updated 1299863 APPROVED
2002-08-07 Smt3h2  SMT3 suppressor of mif two 3 homolog 2 (yeast)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_homology present in the muscle and heart of alligator and turtle and in the testis of pigeon 634201