SUMO2 (small ubiquitin like modifier 2) - Rat Genome Database

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Gene: SUMO2 (small ubiquitin like modifier 2) Canis lupus familiaris
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Symbol: SUMO2
Name: small ubiquitin like modifier 2
RGD ID: 12218193
Description: ENCODES a protein that exhibits nuclear retinoid X receptor binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); positive regulation of protein sumoylation (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: small ubiquitin-like modifier 2; small ubiquitin-related modifier 2; SMT3 suppressor of mif two 3 homolog 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC100684310  
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,298,315 - 5,311,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,298,340 - 5,311,184 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,977,248 - 5,990,106 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,968,618 - 5,981,517 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,968,617 - 5,981,522 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,007,031 - 6,019,893 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,117,312 - 6,130,163 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,177,319 - 6,190,161 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SUMO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,298,315 - 5,311,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,298,340 - 5,311,184 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,977,248 - 5,990,106 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,968,618 - 5,981,517 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,968,617 - 5,981,522 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,007,031 - 6,019,893 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,117,312 - 6,130,163 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,177,319 - 6,190,161 (+)NCBIUU_Cfam_GSD_1.0
SUMO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,165,586 - 75,182,959 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,165,586 - 75,182,959 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,161,681 - 73,179,054 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,675,420 - 70,690,693 (-)NCBINCBI36Build 36hg18NCBI36
Build 341770,675,419 - 70,690,693NCBI
Celera1769,756,196 - 69,771,477 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,573,023 - 68,588,319 (-)NCBIHuRef
CHM1_11773,228,330 - 73,243,802 (-)NCBICHM1_1
T2T-CHM13v2.01776,057,065 - 76,074,452 (-)NCBIT2T-CHM13v2.0
Sumo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,413,935 - 115,427,056 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,413,928 - 115,427,102 (-)EnsemblGRCm39 Ensembl
GRCm3811115,523,109 - 115,536,230 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,523,102 - 115,536,276 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,384,423 - 115,397,544 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,412,880 - 116,426,015 (-)NCBIMGSCv36mm8
MGSCv3611115,339,199 - 115,352,320 (-)NCBIMGSCv36mm8
Celera11127,289,555 - 127,301,144 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.84NCBI
Sumo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,270,899 - 101,283,458 (-)NCBIGRCr8
mRatBN7.210100,771,941 - 100,784,503 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,686,797 - 100,784,513 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl515,099,419 - 15,099,706 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,831,894 - 105,844,470 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,294,964 - 105,307,540 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,692,910 - 100,705,469 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,085,401 - 104,097,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,086,002 - 104,097,812 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,184,388 - 104,195,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,608,097 - 105,620,455 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1099,346,621 - 99,359,172 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Sumo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,045,415 - 2,065,863 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,045,277 - 2,066,023 (-)NCBIChiLan1.0ChiLan1.0
SUMO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,207,894 - 91,222,668 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,030,950 - 96,045,638 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,115,433 - 69,130,065 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,676,897 - 74,683,990 (-)NCBIpanpan1.1PanPan1.1panPan2
Sumo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,925,294 - 5,942,343 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936594469,616 - 484,375 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUMO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,116,606 - 6,130,350 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,116,694 - 6,130,089 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,079,142 - 6,092,538 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUMO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,479,399 - 46,495,591 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,479,406 - 46,496,114 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,253,281 - 17,269,592 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sumo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248014,998,271 - 5,009,492 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SUMO2
89 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000007602   ⟹   ENSCAFP00000007040
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,298,342 - 5,311,184 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000064487   ⟹   ENSCAFP00000045826
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,298,340 - 5,310,592 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845048690   ⟹   ENSCAFP00845038197
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,968,617 - 5,981,522 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845048708   ⟹   ENSCAFP00845038214
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,968,617 - 5,980,924 (+)Ensembl
RefSeq Acc Id: NM_001252289   ⟹   NP_001239218
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.195,298,342 - 5,311,184 (+)NCBI
Dog10K_Boxer_Tasha95,977,248 - 5,990,106 (+)NCBI
ROS_Cfam_1.095,968,646 - 5,981,517 (+)NCBI
UMICH_Zoey_3.196,007,031 - 6,019,893 (+)NCBI
UNSW_CanFamBas_1.096,117,312 - 6,130,163 (+)NCBI
UU_Cfam_GSD_1.096,177,319 - 6,190,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038674989   ⟹   XP_038530917
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.095,968,618 - 5,978,653 (+)NCBI
RefSeq Acc Id: NP_001239218   ⟸   NM_001252289
- UniProtKB: A0A8C0Q4G0 (UniProtKB/TrEMBL),   A0A8I3Q1K4 (UniProtKB/TrEMBL),   A0A8C0SWY0 (UniProtKB/TrEMBL),   A0A8I3S2C8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000045826   ⟸   ENSCAFT00000064487
Ensembl Acc Id: ENSCAFP00000007040   ⟸   ENSCAFT00000007602
RefSeq Acc Id: XP_038530917   ⟸   XM_038674989
- Peptide Label: isoform X1
Ensembl Acc Id: ENSCAFP00845038214   ⟸   ENSCAFT00845048708
Ensembl Acc Id: ENSCAFP00845038197   ⟸   ENSCAFT00845048690
Protein Domains
Rad60/SUMO-like   Ubiquitin-like

Promoters
RGD ID:13684432
Promoter ID:EPDNEW_C2501
Type:initiation region
Name:SUMO2_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.195,298,357 - 5,298,417EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004724 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000031003 UniProtKB/TrEMBL
  ENSCAFG00030003065 UniProtKB/TrEMBL
  ENSCAFG00040003443 UniProtKB/TrEMBL
  ENSCAFG00040016992 UniProtKB/TrEMBL
  ENSCAFG00845021390 UniProtKB/TrEMBL
  ENSCAFG00845027610 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007602.4 UniProtKB/TrEMBL
  ENSCAFT00000064487.2 UniProtKB/TrEMBL
  ENSCAFT00000081493.2 UniProtKB/TrEMBL
  ENSCAFT00030005756.1 UniProtKB/TrEMBL
  ENSCAFT00030005766.1 UniProtKB/TrEMBL
  ENSCAFT00040006551.1 UniProtKB/TrEMBL
  ENSCAFT00040006562.1 UniProtKB/TrEMBL
  ENSCAFT00040031356.1 UniProtKB/TrEMBL
  ENSCAFT00845037735.1 UniProtKB/TrEMBL
  ENSCAFT00845048690 ENTREZGENE
  ENSCAFT00845048690.1 UniProtKB/TrEMBL
  ENSCAFT00845048708.1 UniProtKB/TrEMBL
InterPro Rad60/SUMO-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report cfa:474963 UniProtKB/TrEMBL
NCBI Gene SUMO2 ENTREZGENE
PANTHER SMALL UBIQUITIN-RELATED MODIFIER UniProtKB/TrEMBL
  SMALL UBIQUITIN-RELATED MODIFIER 3 UniProtKB/TrEMBL
  SMALL UBIQUITIN-RELATED MODIFIER 3-RELATED UniProtKB/TrEMBL
Pfam Rad60-SLD UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A8C0M7N9_CANLF UniProtKB/TrEMBL
  A0A8C0Q4G0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SWY0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q1K4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q351_CANLF UniProtKB/TrEMBL
  A0A8I3S2C8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 SUMO2  small ubiquitin like modifier 2    small ubiquitin-like modifier 2  Symbol and/or name change 5135510 APPROVED