Erg (ETS transcription factor ERG)

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Gene: Erg (ETS transcription factor ERG) Rattus norvegicus

Analyze

Symbol:

Erg

Name:

ETS transcription factor ERG

RGD ID:

621108

Description:

Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in several processes, including mesenchyme development; positive regulation of blood vessel remodeling; and positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus and ribonucleoprotein complex. Biomarker of pulmonary venoocclusive disease. Human ortholog(s) of this gene implicated in myeloid leukemia. Orthologous to human ERG (ETS transcription factor ERG); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

avian erythroblastosis virus E-26 (v-ets) oncogene related; ERG, ETS transcription factor; transcriptional regulator ERG; v-ets avian erythroblastosis virus E26 oncogene; v-ets erythroblastosis virus E26 oncogene homolog; v-ets erythroblastosis virus E26 oncogene homolog (avian); v-ets erythroblastosis virus E26 oncogene like; v-ets erythroblastosis virus E26 oncogene like (avian)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ERG (ETS transcription factor ERG)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Erg (ETS transcription factor)	HGNC	NCBI, OMA, HomoloGene, Inparanoid, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Erg (ETS transcription factor ERG)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ERG (ETS transcription factor ERG)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ERG (ETS transcription factor ERG)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Erg (ETS transcription factor ERG)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ERG (ETS transcription factor ERG)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ERG (ETS transcription factor ERG)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Erg (ETS transcription factor ERG)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FLI1 (Fli-1 proto-oncogene, ETS transcription factor)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	ERG (ETS transcription factor ERG)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Erg (ETS transcription factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ast-1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Ets65A	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Ets21C	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ets-5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	34,678,614 - 34,900,951 (-)	NCBI
Rnor_6.0 Ensembl	11	35,646,116 - 35,749,594 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	11	35,645,317 - 35,749,637 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	11	39,231,276 - 39,336,495 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	35,655,563 - 35,760,055 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	11	35,711,805 - 35,816,365 (-)	NCBI
Celera	11	33,675,593 - 33,777,118 (+)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

acute myeloid leukemia (ISO)

epilepsy (ISO)

leukemia (ISO)

myeloid leukemia (ISO)

Neoplastic Processes (ISO)

osteoarthritis (ISS)

Prostatic Neoplasms (ISO)

pulmonary venoocclusive disease (IEP,ISO)

visual epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

atrazine (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloroprene (EXP)

cobalt dichloride (ISO)

cyclophosphamide (ISO)

dorsomorphin (ISO)

endosulfan (ISO)

flavonoids (EXP)

fluvastatin (ISO)

gentamycin (EXP)

methapyrilene (ISO)

methyl methacrylate (ISO)

paracetamol (ISO)

Salinomycin (ISO)

SB 431542 (ISO)

styrene (ISO)

sulforaphane (ISO)

titanium dioxide (ISO)

triadimefon (ISO)

tributylstannane (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

tungsten (ISO)

undecane (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IBA)

cell migration (ISO)

endocardial cushion development (ISO)

endocardial cushion to mesenchymal transition involved in heart valve formation (ISO)

positive regulation of blood vessel remodeling (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA)

ribonucleoprotein complex (ISO)

Molecular Function

chromatin binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated


1.	Birger Y, etal., Blood. 2013 Aug 8;122(6):988-98. doi: 10.1182/blood-2012-10-460998. Epub 2013 May 29.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Manaud G, etal., Am J Respir Cell Mol Biol. 2020 Jul;63(1):118-131. doi: 10.1165/rcmb.2019-0015OC.
4.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	RGD automated data pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions
8.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:17289661	PMID:18195090	PMID:22235125	PMID:22932696	PMID:23093599	PMID:23913826

Genomics

Comparative Map Data

Erg
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	34,678,614 - 34,900,951 (-)	NCBI
Rnor_6.0 Ensembl	11	35,646,116 - 35,749,594 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	11	35,645,317 - 35,749,637 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	11	39,231,276 - 39,336,495 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	35,655,563 - 35,760,055 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	11	35,711,805 - 35,816,365 (-)	NCBI
Celera	11	33,675,593 - 33,777,118 (+)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

ERG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	21	38,380,027 - 38,661,780 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	21	38,367,261 - 38,661,783 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	21	39,739,183 - 40,033,707 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	21	39,739,183 - 40,033,704 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	38,675,671 - 38,955,488 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	21	38,675,670 - 38,792,267	NCBI
Celera	21	24,949,807 - 25,231,400 (-)	NCBI
Cytogenetic Map	21	q22.2	NCBI
HuRef	21	25,208,970 - 25,503,512 (-)	NCBI		HuRef
CHM1_1	21	39,299,733 - 39,594,417 (-)	NCBI		CHM1_1

Erg
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	95,160,028 - 95,387,452 (-)	NCBI	GRCm39		mm39
GRCm38	16	95,359,169 - 95,586,600 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	95,359,169 - 95,586,593 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	95,581,811 - 95,751,972 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	16	95,469,002 - 95,639,163 (-)	NCBI			mm8
Celera	16	96,438,595 - 96,608,910 (-)	NCBI		Celera
Cytogenetic Map	16	C4	NCBI
cM Map	16	56.04	NCBI

Erg
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	37,369,641 - 37,542,751 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	37,372,471 - 37,613,674 (-)	NCBI	ChiLan1.0	ChiLan1.0

ERG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	21	38,087,333 - 38,366,637 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	38,087,339 - 38,281,403 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	21	24,737,829 - 25,016,378 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ERG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	31	33,497,209 - 33,515,272 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	31	33,456,902 - 33,562,704 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Erg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936500	4,459,298 - 4,623,290 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ERG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	202,000,985 - 202,302,577 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	201,999,237 - 202,302,572 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	212,086,250 - 212,156,873 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ERG
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	82,327,088 - 82,611,341 (-)	NCBI
ChlSab1.1 Ensembl	2	82,326,767 - 82,447,228 (-)	Ensembl

Erg
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624745	25,239,356 - 25,457,533 (+)	NCBI

Position Markers

RH140783

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	11	35,646,805 - 35,646,954	NCBI	Rnor6.0
Rnor_5.0	11	39,232,764 - 39,232,913	UniSTS	Rnor5.0
RGSC_v3.4	11	35,655,853 - 35,656,002	UniSTS	RGSC3.4
Celera	11	33,776,679 - 33,776,828	UniSTS
RH 3.4 Map	11	258.81	UniSTS
Cytogenetic Map	11	q11	UniSTS

MARC_15619-15620:1017174255:3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	11	35,665,362 - 35,666,200	NCBI	Rnor6.0
Rnor_5.0	11	39,251,055 - 39,251,893	UniSTS	Rnor5.0
RGSC_v3.4	11	35,674,815 - 35,675,653	UniSTS	RGSC3.4
Celera	11	33,757,607 - 33,758,445	UniSTS
Cytogenetic Map	11	q11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	72720192	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	325031	69342559	Rat
1641927	Alcrsp10	Alcohol response QTL 10			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	11	9351274	54351274	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	11367306	44444347	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	16321973	46583360	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	19016272	90463843	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	19475179	79734728	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	21944229	66944229	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	21944229	66944229	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	22043149	44444112	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	25401129	70401129	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	25720038	70720038	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	25720038	70720038	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	25720038	70720038	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	25720038	70720038	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	28314665	86994795	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	30435339	63186373	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	30435339	86714631	Rat
2298551	Neuinf10	Neuroinflammation QTL 10	3.7		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	11	32155520	82443118	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	62
Count of miRNA genes:	53
Interacting mature miRNAs:	58
Transcripts:	ENSRNOT00000039999
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		29	4	4	5	4				22	20	11
Low	3	14	53	37	14	37	8	11	74	13	21		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_133397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB031088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC072519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000039999 ⟹ ENSRNOP00000047414

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	11	35,646,890 - 35,697,072 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078425 ⟹ ENSRNOP00000069853

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	11	35,646,116 - 35,749,594 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078818 ⟹ ENSRNOP00000070629

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	11	35,646,428 - 35,749,464 (-)	Ensembl

RefSeq Acc Id:

NM_133397 ⟹ NP_596888

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	34,679,812 - 34,782,034 (-)	NCBI
Rnor_6.0	11	35,646,515 - 35,749,484 (-)	NCBI
Rnor_5.0	11	39,231,276 - 39,336,495 (-)	NCBI
RGSC_v3.4	11	35,655,563 - 35,760,055 (-)	RGD
Celera	11	33,675,593 - 33,777,118 (+)	RGD

Sequence:

show sequence

GGTCAGAGAGAAGCAATAATTATTATTAACATTTATTAACGATCAATAAACTTGATTGCATTAT
GGCCAGCACTATTAAGGAGGCCTTGTCAGTTGTGAGCAAGGACCAGTCACTATTTGAGTGTGCC
TACGGAACGCCACACCTGGCTAAGACAGAAATGACCGCATCCTCTTCCAGTGACTATGGCCAGA
CATCCAAGATGAGTCCCAGAGTCCCACAACAGGACTGGCTGTCTCAGCCCCCAGCCAGGGTCAC
CATCAAGATGGAGTGCAACCCTAGCCAGGTGAACGGTTCCAGGAACTCACCTGACGAATGCAGT
GTGACCAAAGGTGGGAAGATGGTGGGCAGCCCTGATACTGTGGGAATGAGCTACGGCAGCTACA
TGGAGGAGAAGCACATGCCGCCCCCCAATATGACCACGAATGAACGCAGAGTGATCGTCCCTGC
AGATCCTACTCTGTGGAGCACAGACCATGTCCGGCAGTGGCTGGAGTGGGCAGTGAAAGAATAC
GGCCTCCTAGACGTGGACGTCTTATTATTTCAGAATATTGACGGGAAGGAGCTGTGCAAGATGA
CAAAAGATGACTTCCAGAGGCTCACTCCGAGCTACAATGCCGACATTCTTCTCTCACATCTCCA
CTACCTCAGAGAGACTCCCCTTCCACATCTGACATCCGACGACGTTGATAAGGCTTTACAAAAC
TCTCCACGGTTAATGCATGCTAGAAACACAGATTTACCTTATGAGCCTCCCAGGAGATCAACCT
GGACCGGCCACAGCCACCCCACCCCTCAGTCCAAAGCTGCCCAGCCATCTCCCTCCACAGTGCC
CAAAACTGAAGACCAGCGTCCTCAGTTAGATCCTTACCAGATCCTGGGACCCACCAGTAGTCGC
CTTGCTAATCCAGGTAGTGGCCAGATCCAGCTGTGGCAGTTCCTGCTAGAACTCCTGTCTGACA
GCTCCAACTCCAACTGCATCACCTGGGAAGGCACCAACGGGGAGTTCAAGATGACAGACCCGGA
TGAGGTGGCTCGGCGCTGGGGGGAGCGGAAGAGCAAGCCCAACATGAACTATGACAAACTCAGC
CGTGCCCTCCGCTACTACTACGACAAAAACATCATGACCAAGGTGCACGGGAAGCGCTATGCCT
ACAAGTTTGACTTCCACGGGATTGCCCAGGCCCTGCAGCCCCATCCCCCCGAGTCGTCCCTGTA
CAAGTACCCCTCCGACCTGCCGTACATGGGCTCCTATCACACCCACCCCCAGAAGATGAACTTT
GTGGCTCCCCACCCTCCGGCCCTCCCAGTCACATCTTCCAGTTTCTTTGCTACCCCGAACCCAT
ACTGGAATTCGCCGACTGGGGGCATCTACCCGAACACTAGGCTCCCAGCCAGCCATATGCCCTC
TCACCTGGGCACCTACTACTAGAGACCAGATAGAGGCCTTTCCCAACAGTGCACAATCGCCTAG
CAATCACCACAGACTCAGAGAACACAAATCGAAAGTGCCTCCTGAGGAATGGAAACGGTTGGCC
AGAGCTGGGGAAGGAAGCCGGGGAAAGAAAACCAAAGACTCACAGGGGAGGGTGGGCACCACCC
AAGTATTACTACAGAAATAGAAGAAGCTCAAAATATCCTGTACATGGACATATAACCTGTGGTC
CACCCTTGTCAAAGACATTGTATGTAGAAAAGCGTGACCGAGAAGAACAACTGTCCAAGGAAGT
GGCCTTAAGTAGTGTACAAACTGTAGAGTGTGGGAAATAACTTGTACCAGGATTCTGTGAGAGC
AATAGAACCATAA

hide sequence

RefSeq Acc Id:

XM_006248142 ⟹ XP_006248204

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	34,678,614 - 34,782,106 (-)	NCBI
Rnor_6.0	11	35,645,317 - 35,749,637 (-)	NCBI
Rnor_5.0	11	39,231,276 - 39,336,495 (-)	NCBI

Sequence:

show sequence

CAGGGTCTCTTATCTCTCCACTCCCAAATATCCTGTTTCTTTGGGCTGGGCAGGCAGGACCAAT
AGAAACCTCTTCCTGCCATTGGCTGACTTCATTTCCCAGACTTAGCACAATCTCATCCGCTCTA
AACAACCTCATCAAAACTACTTTCTGGTCAGAGAGAAGCAATAATTATTATTAACATTTATTAA
CGATCAATAAACTTGATTGCATTATGGCCAGCACTATTAAGGAGGCCTTGTCAGTTGTGAGCGA
GGACCAGTCACTATTTGAGTGTGCCTACGGAACGCCACACCTGGCTAAGACAGAAATGACCGCA
TCCTCTTCCAGTGACTATGGCCAGACATCCAAGATGAGTCCCAGAGTCCCACAACAGGACTGGC
TGTCTCAGCCCCCAGCCAGGGTCACCATCAAGATGGAGTGCAACCCTAGCCAGGTGAACGGTTC
CAGGAACTCACCTGACGAATGCAGTGTGACCAAAGGTGGGAAGATGGTGGGCAGCCCTGATACT
GTGGGAATGAGCTACGGCAGCTACATGGAGGAGAAGCACATGCCGCCCCCCAATATGACCACGA
ATGAACGCAGAGTGATCGTCCCTGCAGATCCTACTCTGTGGAGCACAGACCATGTCCGGCAGTG
GCTGGAGTGGGCAGTGAAAGAATACGGCCTCCTAGACGTGGACGTCTTATTATTTCAGAATATT
GACGGGAAGGAGCTGTGCAAGATGACAAAAGATGACTTCCAGAGGCTCACTCCGAGCTACAATG
CCGACATTCTTCTCTCACATCTCCACTACCTCAGAGAGACTCCCCTTCCACATCTGACATCCGA
CGACGTTGATAAGGCTTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAGGGGGTGCA
GCTTTTATTTTCCCCAATACTTCAGTATATCCCGAAGCCACGCAGAGAATTACAACTAGGCCAG
ATTTACCTTATGAGCCTCCCAGGAGATCAACCTGGACCGGCCACAGCCACCCCACCCCTCAGTC
CAAAGCTGCCCAGCCATCTCCCTCCACAGTGCCCAAAACTGAAGACCAGCGTCCTCAGTTAGAT
CCTTACCAGATCCTGGGACCCACCAGTAGTCGCCTTGCTAATCCAGGTAGTGGCCAGATCCAGC
TGTGGCAGTTCCTGCTAGAACTCCTGTCTGACAGCTCCAACTCCAACTGCATCACCTGGGAAGG
CACCAACGGGGAGTTCAAGATGACAGACCCGGATGAGGTGGCTCGGCGCTGGGGGGAGCGGAAG
AGCAAGCCCAACATGAACTATGACAAACTCAGCCGTGCCCTCCGCTACTACTACGACAAAAACA
TCATGACCAAGGTGCATGGGAAGCGCTATGCCTACAAGTTTGACTTCCACGGGATTGCCCAGGC
CCTGCAGCCCCATCCCCCCGAGTCGTCCCTGTACAAGTACCCCTCCGACCTGCCGTACATGGGC
TCCTATCACACCCACCCCCAGAAGATGAACTTTGTGGCTCCCCACCCTCCGGCCCTCCCAGTCA
CATCTTCCAGTTTCTTTGCTACCCCGAACCCATACTGGAATTCGCCGACTGGGGGCATCTACCC
GAACACTAGGCTCCCAGCCAGCCATATGCCCTCTCACCTGGGCACCTACTACTAGAGACCAGAT
AGAGGCCTTTCCCAACAGTGCACAATCGCCTAGCAATCACCACAAACTCAGAGAACACAAATCG
AAAGTGCCTCCTGAGGAATGGAAACGGTTGGCCAGAGCTGGGGAAGGAAGCCGGGGAAAGAAAA
CCAAAGACTCACAGGGGAGGGTGGGCACCACCCAAGTATTACTACAGAAATAGAAGAAGCTCAA
AATATACTGTACATGGACATATAACCTGTGGTCCACCCTTGTCAAAGACATTGTATGTAGAAAA
GCGTGACCGAGAAGAACAACTGTCCAAGGAAGTGGCCTTAAGTAGTGTACAAACTGTAGAGTGT
GGGACCTTGCTTGTACCAGGATTCAGTGAGAGCAATAGAACCATAACAGTCTTGGCCTAGCACA
CCATCACGTGTGATGACATTTGAAGGGAAACTACCTGTGTTTAAAAACAGAAAAAAACATATCC
AAACCAAATAAGAAGAGGAAAAAAAAAAAAAGATGGCGGCCCCTCCACAGACCACAATGGCTGT
GGATTTTCTTGGCTGGCATTTGCTGTTTTCATTGAAATCAGGTTCGTTCCATTTGATAGGGAGC
TGCCAGCTCTGTCAAACTGTGAAGATGACCCAGCGTCTCATCACCTTTTCAGTATTACGGGAAA
TGTGGGCCATGTGGTGGGCGGGGAATGTATGTGCATGTTGTTGTGAGTATGTGATCATAGAAGA
AAGACTGAAACGGAGGAAGAGATAGAGGATCAGGGGTTGGGGAGGGAGTTAAGGGAGAGGAGGA
AGTGGAAGAGGAAGAGGAGGAGGGAGGAGGAGAAAGGGGGAGGAAGAAAAGGAGGAAGAGGAGA
AAGGAGGAGGAAGAAAAGGAGAAAATGAGGAAGAGAAGGAAAAGAAGAAAAGAAGGGGGAGGAA
GAGGAGAAGGAGGAAGAGGAAGAGAGGAAGAGAAGCAAGCTGCTCAAGCCACCACAGCTGAATT
TAGGACATCTTGGGACCAAAGAGCATGAGTCAAGATGTTTGATGCTGCCAGGGTTGTAAGAAAG
GACACAGATTTGTGGAGGACTGGGAGCAGTAGTATTCAGAACCAAAAATATGTCTCTTTGTGAA
AAGGAAATCATAACTGGAATTGTCTGATATTTAAAAAATTCAGGACCTCAGTATTCAATGGAGG
CTTTGTCCTTCACAGGGGGCAGTTGAGAGGTGACCTTGGTGGCTACCATGGTCAGAGACCACAC
AGGCATTGTGGGTAGGTGGGCTCCAGTTTTCCTTAATGAGTCGCGAACGCTGTGCGTTCGTCAG
AACGAAGTCTACAAGTCAATGGTTTTTTTCTTTTTATATAATAATTATATAACTTATGCATTTA
TACACTACGAGTTGACCTCGGCCAGCCAAAGACACCACACACACACACACACACACACACACAC
ACACACACACACACACAAAAGAGACAATCAAACATATGATGTGGCCTTGAATTTTAACTCTGTA
ATGCTTAATGTTTACAATATGAAGTTACTAGTTCTTAGAATGCAGAATGTATGTTAATAAAAAT
GAGCTTGGCCTCTCATGGCGAACCAGAA

hide sequence

RefSeq Acc Id:

XM_006248143 ⟹ XP_006248205

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	35,645,317 - 35,749,637 (-)	NCBI
Rnor_5.0	11	39,231,276 - 39,336,495 (-)	NCBI

Sequence:

show sequence

CAGGGTCTCTTATCTCTCCACTCCCAAATATCCTGTTTCTTTGGGCTGGGCAGGCAGGACCAAT
AGAAACCTCTTCCTGCCATTGGCTGACTTCATTTCCCAGACTTAGCACAATCTCATCCGCTCTA
AACAACCTCATCAAAACTACTTTCTGGTCAGAGAGAAGCAATAATTATTATTAACATTTATTAA
CGATCAATAAACTTGATTGCATTATGGCCAGCACTATTAAGGAGGCCTTGTCAGTTGTGAGCGA
GGACCAGTCACTATTTGAGTGTGCCTACGGAACGCCACACCTGGCTAAGACAGAAATGACCGCA
TCCTCTTCCAGTGACTATGGCCAGACATCCAAGATGAGTCCCAGAGTCCCACAACAGGACTGGC
TGTCTCAGCCCCCAGCCAGGGTCACCATCAAGATGGAGTGCAACCCTAGCCAGGTGAACGGTTC
CAGGAACTCACCTGACGAATGCAGTGTGACCAAAGGTGGGAAGATGGTGGGCAGCCCTGATACT
GTGGGAATGAGCTACGGCAGCTACATGGAGGAGAAGCACATGCCGCCCCCCAATATGACCACGA
ATGAACGCAGAGTGATCGTCCCTGCAGATCCTACTCTGTGGAGCACAGACCATGTCCGGCAGTG
GCTGGAGTGGGCAGTGAAAGAATACGGCCTCCTAGACGTGGACGTCTTATTATTTCAGAATATT
GACGGGAAGGAGCTGTGCAAGATGACAAAAGATGACTTCCAGAGGCTCACTCCGAGCTACAATG
CCGACATTCTTCTCTCACATCTCCACTACCTCAGAGAGACTCCCCTTCCACATCTGACATCCGA
CGACGTTGATAAGGCTTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAGGGGGTGCA
GCTTTTATTTTCCCCAATACTTCAGTATATCCCGAAGCCACGCAGAGAATTACAACTAGGCCAG
CTGCCCAGCCATCTCCCTCCACAGTGCCCAAAACTGAAGACCAGCGTCCTCAGTTAGATCCTTA
CCAGATCCTGGGACCCACCAGTAGTCGCCTTGCTAATCCAGGTAGTGGCCAGATCCAGCTGTGG
CAGTTCCTGCTAGAACTCCTGTCTGACAGCTCCAACTCCAACTGCATCACCTGGGAAGGCACCA
ACGGGGAGTTCAAGATGACAGACCCGGATGAGGTGGCTCGGCGCTGGGGGGAGCGGAAGAGCAA
GCCCAACATGAACTATGACAAACTCAGCCGTGCCCTCCGCTACTACTACGACAAAAACATCATG
ACCAAGGTGCATGGGAAGCGCTATGCCTACAAGTTTGACTTCCACGGGATTGCCCAGGCCCTGC
AGCCCCATCCCCCCGAGTCGTCCCTGTACAAGTACCCCTCCGACCTGCCGTACATGGGCTCCTA
TCACACCCACCCCCAGAAGATGAACTTTGTGGCTCCCCACCCTCCGGCCCTCCCAGTCACATCT
TCCAGTTTCTTTGCTACCCCGAACCCATACTGGAATTCGCCGACTGGGGGCATCTACCCGAACA
CTAGGCTCCCAGCCAGCCATATGCCCTCTCACCTGGGCACCTACTACTAGAGACCAGATAGAGG
CCTTTCCCAACAGTGCACAATCGCCTAGCAATCACCACAAACTCAGAGAACACAAATCGAAAGT
GCCTCCTGAGGAATGGAAACGGTTGGCCAGAGCTGGGGAAGGAAGCCGGGGAAAGAAAACCAAA
GACTCACAGGGGAGGGTGGGCACCACCCAAGTATTACTACAGAAATAGAAGAAGCTCAAAATAT
ACTGTACATGGACATATAACCTGTGGTCCACCCTTGTCAAAGACATTGTATGTAGAAAAGCGTG
ACCGAGAAGAACAACTGTCCAAGGAAGTGGCCTTAAGTAGTGTACAAACTGTAGAGTGTGGGAC
CTTGCTTGTACCAGGATTCAGTGAGAGCAATAGAACCATAACAGTCTTGGCCTAGCACACCATC
ACGTGTGATGACATTTGAAGGGAAACTACCTGTGTTTAAAAACAGAAAAAAACATATCCAAACC
AAATAAGAAGAGGAAAAAAAAAAAAAGATGGCGGCCCCTCCACAGACCACAATGGCTGTGGATT
TTCTTGGCTGGCATTTGCTGTTTTCATTGAAATCAGGTTCGTTCCATTTGATAGGGAGCTGCCA
GCTCTGTCAAACTGTGAAGATGACCCAGCGTCTCATCACCTTTTCAGTATTACGGGAAATGTGG
GCCATGTGGTGGGCGGGGAATGTATGTGCATGTTGTTGTGAGTATGTGATCATAGAAGAAAGAC
TGAAACGGAGGAAGAGATAGAGGATCAGGGGTTGGGGAGGGAGTTAAGGGAGAGGAGGAAGTGG
AAGAGGAAGAGGAGGAGGGAGGAGGAGAAAGGGGGAGGAAGAAAAGGAGGAAGAGGAGAAAGGA
GGAGGAAGAAAAGGAGAAAATGAGGAAGAGAAGGAAAAGAAGAAAAGAAGGGGGAGGAAGAGGA
GAAGGAGGAAGAGGAAGAGAGGAAGAGAAGCAAGCTGCTCAAGCCACCACAGCTGAATTTAGGA
CATCTTGGGACCAAAGAGCATGAGTCAAGATGTTTGATGCTGCCAGGGTTGTAAGAAAGGACAC
AGATTTGTGGAGGACTGGGAGCAGTAGTATTCAGAACCAAAAATATGTCTCTTTGTGAAAAGGA
AATCATAACTGGAATTGTCTGATATTTAAAAAATTCAGGACCTCAGTATTCAATGGAGGCTTTG
TCCTTCACAGGGGGCAGTTGAGAGGTGACCTTGGTGGCTACCATGGTCAGAGACCACACAGGCA
TTGTGGGTAGGTGGGCTCCAGTTTTCCTTAATGAGTCGCGAACGCTGTGCGTTCGTCAGAACGA
AGTCTACAAGTCAATGGTTTTTTTCTTTTTATATAATAATTATATAACTTATGCATTTATACAC
TACGAGTTGACCTCGGCCAGCCAAAGACACCACACACACACACACACACACACACACACACACA
CACACACACACAAAAGAGACAATCAAACATATGATGTGGCCTTGAATTTTAACTCTGTAATGCT
TAATGTTTACAATATGAAGTTACTAGTTCTTAGAATGCAGAATGTATGTTAATAAAAATGAGCT
TGGCCTCTCATGGCGAACCAGAA

hide sequence

RefSeq Acc Id:

XM_006248145 ⟹ XP_006248207

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	35,645,317 - 35,749,636 (-)	NCBI
Rnor_5.0	11	39,231,276 - 39,336,495 (-)	NCBI

Sequence:

show sequence

AGGGTCTCTTATCTCTCCACTCCCAAATATCCTGTTTCTTTGGGCTGGGCAGGCAGGACCAATA
GAAACCTCTTCCTGCCATTGGCTGACTTCATTTCCCAGACTTAGCACAATCTCATCCGCTCTAA
ACAACCTCATCAAAACTACTTTCTGGTCAGAGAGAAGCAATAATTATTATTAACATTTATTAAC
GATCAATAAACTTGATTGCATTATGGCCAGCACTATTAAGGAGGCCTTGTCAGTTGTGAGCGAG
GACCAGTCACTATTTGAGTGTGCCTACGGAACGCCACACCTGGCTAAGACAGAAATGACCGCAT
CCTCTTCCAGTGACTATGGCCAGACATCCAAGATGAGTCCCAGAGTCCCACAACAGGACTGGCT
GTCTCAGCCCCCAGCCAGGGTCACCATCAAGATGGAGTGCAACCCTAGCCAGGTGAACGGTTCC
AGGAACTCACCTGACGAATGCAGTGTGACCAAAGGTGGGAAGATGGTGGGCAGCCCTGATACTG
TGGGAATGAGCTACGGCAGCTACATGGAGGAGAAGCACATGCCGCCCCCCAATATGACCACGAA
TGAACGCAGAGTGATCGTCCCTGCAGATCCTACTCTGTGGAGCACAGACCATGTCCGGCAGTGG
CTGGAGTGGGCAGTGAAAGAATACGGCCTCCTAGACGTGGACGTCTTATTATTTCAGAATATTG
ACGGGAAGGAGCTGTGCAAGATGACAAAAGATGACTTCCAGAGGCTCACTCCGAGCTACAATGC
CGACATTCTTCTCTCACATCTCCACTACCTCAGAGAGACTCCCCTTCCACATCTGACATCCGAC
GACGTTGATAAGGCTTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAGCTGCCCAGC
CATCTCCCTCCACAGTGCCCAAAACTGAAGACCAGCGTCCTCAGTTAGATCCTTACCAGATCCT
GGGACCCACCAGTAGTCGCCTTGCTAATCCAGGTAGTGGCCAGATCCAGCTGTGGCAGTTCCTG
CTAGAACTCCTGTCTGACAGCTCCAACTCCAACTGCATCACCTGGGAAGGCACCAACGGGGAGT
TCAAGATGACAGACCCGGATGAGGTGGCTCGGCGCTGGGGGGAGCGGAAGAGCAAGCCCAACAT
GAACTATGACAAACTCAGCCGTGCCCTCCGCTACTACTACGACAAAAACATCATGACCAAGGTG
CATGGGAAGCGCTATGCCTACAAGTTTGACTTCCACGGGATTGCCCAGGCCCTGCAGCCCCATC
CCCCCGAGTCGTCCCTGTACAAGTACCCCTCCGACCTGCCGTACATGGGCTCCTATCACACCCA
CCCCCAGAAGATGAACTTTGTGGCTCCCCACCCTCCGGCCCTCCCAGTCACATCTTCCAGTTTC
TTTGCTACCCCGAACCCATACTGGAATTCGCCGACTGGGGGCATCTACCCGAACACTAGGCTCC
CAGCCAGCCATATGCCCTCTCACCTGGGCACCTACTACTAGAGACCAGATAGAGGCCTTTCCCA
ACAGTGCACAATCGCCTAGCAATCACCACAAACTCAGAGAACACAAATCGAAAGTGCCTCCTGA
GGAATGGAAACGGTTGGCCAGAGCTGGGGAAGGAAGCCGGGGAAAGAAAACCAAAGACTCACAG
GGGAGGGTGGGCACCACCCAAGTATTACTACAGAAATAGAAGAAGCTCAAAATATACTGTACAT
GGACATATAACCTGTGGTCCACCCTTGTCAAAGACATTGTATGTAGAAAAGCGTGACCGAGAAG
AACAACTGTCCAAGGAAGTGGCCTTAAGTAGTGTACAAACTGTAGAGTGTGGGACCTTGCTTGT
ACCAGGATTCAGTGAGAGCAATAGAACCATAACAGTCTTGGCCTAGCACACCATCACGTGTGAT
GACATTTGAAGGGAAACTACCTGTGTTTAAAAACAGAAAAAAACATATCCAAACCAAATAAGAA
GAGGAAAAAAAAAAAAAGATGGCGGCCCCTCCACAGACCACAATGGCTGTGGATTTTCTTGGCT
GGCATTTGCTGTTTTCATTGAAATCAGGTTCGTTCCATTTGATAGGGAGCTGCCAGCTCTGTCA
AACTGTGAAGATGACCCAGCGTCTCATCACCTTTTCAGTATTACGGGAAATGTGGGCCATGTGG
TGGGCGGGGAATGTATGTGCATGTTGTTGTGAGTATGTGATCATAGAAGAAAGACTGAAACGGA
GGAAGAGATAGAGGATCAGGGGTTGGGGAGGGAGTTAAGGGAGAGGAGGAAGTGGAAGAGGAAG
AGGAGGAGGGAGGAGGAGAAAGGGGGAGGAAGAAAAGGAGGAAGAGGAGAAAGGAGGAGGAAGA
AAAGGAGAAAATGAGGAAGAGAAGGAAAAGAAGAAAAGAAGGGGGAGGAAGAGGAGAAGGAGGA
AGAGGAAGAGAGGAAGAGAAGCAAGCTGCTCAAGCCACCACAGCTGAATTTAGGACATCTTGGG
ACCAAAGAGCATGAGTCAAGATGTTTGATGCTGCCAGGGTTGTAAGAAAGGACACAGATTTGTG
GAGGACTGGGAGCAGTAGTATTCAGAACCAAAAATATGTCTCTTTGTGAAAAGGAAATCATAAC
TGGAATTGTCTGATATTTAAAAAATTCAGGACCTCAGTATTCAATGGAGGCTTTGTCCTTCACA
GGGGGCAGTTGAGAGGTGACCTTGGTGGCTACCATGGTCAGAGACCACACAGGCATTGTGGGTA
GGTGGGCTCCAGTTTTCCTTAATGAGTCGCGAACGCTGTGCGTTCGTCAGAACGAAGTCTACAA
GTCAATGGTTTTTTTCTTTTTATATAATAATTATATAACTTATGCATTTATACACTACGAGTTG
ACCTCGGCCAGCCAAAGACACCACACACACACACACACACACACACACACACACACACACACAC
ACAAAAGAGACAATCAAACATATGATGTGGCCTTGAATTTTAACTCTGTAATGCTTAATGTTTA
CAATATGAAGTTACTAGTTCTTAGAATGCAGAATGTATGTTAATAAAAATGAGCTTGGCCTCTC
ATGGCGAACCAGAA

hide sequence

RefSeq Acc Id:

XM_039087928 ⟹ XP_038943856

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	34,678,614 - 34,900,951 (-)	NCBI

RefSeq Acc Id:

XM_039087929 ⟹ XP_038943857

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	34,678,614 - 34,899,906 (-)	NCBI

RefSeq Acc Id:

XM_039087930 ⟹ XP_038943858

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	34,678,614 - 34,900,951 (-)	NCBI

RefSeq Acc Id:

XM_039087931 ⟹ XP_038943859

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	34,678,614 - 34,900,950 (-)	NCBI

RefSeq Acc Id:

XM_039087932 ⟹ XP_038943860

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	34,678,614 - 34,781,923 (-)	NCBI

RefSeq Acc Id:

XM_039087933 ⟹ XP_038943861

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	34,678,614 - 34,900,950 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_596888	(Get FASTA)	NCBI Sequence Viewer
	XP_006248204	(Get FASTA)	NCBI Sequence Viewer
	XP_038943856	(Get FASTA)	NCBI Sequence Viewer
	XP_038943857	(Get FASTA)	NCBI Sequence Viewer
	XP_038943858	(Get FASTA)	NCBI Sequence Viewer
	XP_038943859	(Get FASTA)	NCBI Sequence Viewer
	XP_038943860	(Get FASTA)	NCBI Sequence Viewer
	XP_038943861	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH72519	(Get FASTA)	NCBI Sequence Viewer
	BAB62744	(Get FASTA)	NCBI Sequence Viewer
	EDL76687	(Get FASTA)	NCBI Sequence Viewer
	EDL76688	(Get FASTA)	NCBI Sequence Viewer
	EDL76689	(Get FASTA)	NCBI Sequence Viewer
	EDL76690	(Get FASTA)	NCBI Sequence Viewer
	EDL76691	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_596888 ⟸ NM_133397

- UniProtKB:

Q91XV5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASTIKEALSVVSKDQSLFECAYGTPHLAKTEMTASSSSDYGQTSKMSPRVPQQDWLSQPPARV
TIKMECNPSQVNGSRNSPDECSVTKGGKMVGSPDTVGMSYGSYMEEKHMPPPNMTTNERRVIVP
ADPTLWSTDHVRQWLEWAVKEYGLLDVDVLLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHL
HYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEPPRRSTWTGHSHPTPQSKAAQPSPSTV
PKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSNCITWEGTNGEFKMTDP
DEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPPESSL
YKYPSDLPYMGSYHTHPQKMNFVAPHPPALPVTSSSFFATPNPYWNSPTGGIYPNTRLPASHMP
SHLGTYY

hide sequence

RefSeq Acc Id:

XP_006248207 ⟸ XM_006248145

- Peptide Label:

isoform X3

- Sequence:

show sequence

MASTIKEALSVVSEDQSLFECAYGTPHLAKTEMTASSSSDYGQTSKMSPRVPQQDWLSQPPARV
TIKMECNPSQVNGSRNSPDECSVTKGGKMVGSPDTVGMSYGSYMEEKHMPPPNMTTNERRVIVP
ADPTLWSTDHVRQWLEWAVKEYGLLDVDVLLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHL
HYLRETPLPHLTSDDVDKALQNSPRLMHARNTAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRL
ANPGSGQIQLWQFLLELLSDSSNSNCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSR
ALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPPESSLYKYPSDLPYMGSYHTHPQKMNFV
APHPPALPVTSSSFFATPNPYWNSPTGGIYPNTRLPASHMPSHLGTYY

hide sequence

RefSeq Acc Id:

XP_006248205 ⟸ XM_006248143

- Peptide Label:

isoform X2

- Sequence:

show sequence

MASTIKEALSVVSEDQSLFECAYGTPHLAKTEMTASSSSDYGQTSKMSPRVPQQDWLSQPPARV
TIKMECNPSQVNGSRNSPDECSVTKGGKMVGSPDTVGMSYGSYMEEKHMPPPNMTTNERRVIVP
ADPTLWSTDHVRQWLEWAVKEYGLLDVDVLLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHL
HYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRPAAQPSPST
VPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSNCITWEGTNGEFKMTD
PDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPPESS
LYKYPSDLPYMGSYHTHPQKMNFVAPHPPALPVTSSSFFATPNPYWNSPTGGIYPNTRLPASHM
PSHLGTYY

hide sequence

RefSeq Acc Id:	XP_006248204 ⟸ XM_006248142
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JWE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASTIKEALSVVSEDQSLFECAYGTPHLAKTEMTASSSSDYGQTSKMSPRVPQQDWLSQPPARV TIKMECNPSQVNGSRNSPDECSVTKGGKMVGSPDTVGMSYGSYMEEKHMPPPNMTTNERRVIVP ADPTLWSTDHVRQWLEWAVKEYGLLDVDVLLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHL HYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRPDLPYEPPR RSTWTGHSHPTPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLEL LSDSSNSNCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGK RYAYKFDFHGIAQALQPHPPESSLYKYPSDLPYMGSYHTHPQKMNFVAPHPPALPVTSSSFFAT PNPYWNSPTGGIYPNTRLPASHMPSHLGTYY hide sequence

RefSeq Acc Id:

ENSRNOP00000069853 ⟸ ENSRNOT00000078425

RefSeq Acc Id:

ENSRNOP00000047414 ⟸ ENSRNOT00000039999

RefSeq Acc Id:

ENSRNOP00000070629 ⟸ ENSRNOT00000078818

RefSeq Acc Id:	XP_038943858 ⟸ XM_039087930
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038943856 ⟸ XM_039087928
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038943861 ⟸ XM_039087933
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038943859 ⟸ XM_039087931
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038943857 ⟸ XM_039087929
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038943860 ⟸ XM_039087932
- Peptide Label:	isoform X5

Protein Domains

ETS PNT

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698082

Promoter ID:

EPDNEW_R8607

Type:

multiple initiation site

Name:

Erg_1

Description:

ERG, ETS transcription factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	35,749,519 - 35,749,579	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
11	39241051	39241052	T	C	snv	M520/N (KNAW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
11	35655358	35655359	T	C	snv	M520/N (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621108	AgrOrtholog
Ensembl Genes	ENSRNOG00000001652	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000047414	UniProtKB/TrEMBL
	ENSRNOP00000069853	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000070629	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000039999	UniProtKB/TrEMBL
	ENSRNOT00000078425	UniProtKB/TrEMBL
	ENSRNOT00000078818	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	1.10.150.50	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7105647	IMAGE-MGC_LOAD
InterPro	Ets	UniProtKB/TrEMBL
	SAM_PNT	UniProtKB/TrEMBL
	SAM_type	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:170909	UniProtKB/TrEMBL
MGC_CLONE	MGC:91507	IMAGE-MGC_LOAD
NCBI Gene	170909	ENTREZGENE
Pfam	Ets	UniProtKB/TrEMBL
	SAM_PNT	UniProtKB/TrEMBL
PhenoGen	Erg	PhenoGen
PRINTS	ETSDOMAIN	UniProtKB/TrEMBL
PROSITE	ETS_DOMAIN_1	UniProtKB/TrEMBL
	ETS_DOMAIN_2	UniProtKB/TrEMBL
	ETS_DOMAIN_3	UniProtKB/TrEMBL
	PNT	UniProtKB/TrEMBL
SMART	ETS	UniProtKB/TrEMBL
	SAM_PNT	UniProtKB/TrEMBL
Superfamily-SCOP	SAM_homology	UniProtKB/TrEMBL
	SSF46785	UniProtKB/TrEMBL
UniProt	A0A0G2JWE9	ENTREZGENE, UniProtKB/TrEMBL
	D4A3D6_RAT	UniProtKB/TrEMBL
	Q6IMZ7_RAT	UniProtKB/TrEMBL
	Q91XV5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-08-24	Erg	ETS transcription factor ERG	Erg	ERG, ETS transcription factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-07-26	Erg	ERG, ETS transcription factor	Erg	v-ets avian erythroblastosis virus E26 oncogene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-07-18	Erg	v-ets avian erythroblastosis virus E26 oncogene	Erg	v-ets erythroblastosis virus E26 oncogene homolog (avian)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-12-15	Erg	v-ets erythroblastosis virus E26 oncogene homolog (avian)	Erg	avian erythroblastosis virus E-26 (v-ets) oncogene related	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-22	Erg	avian erythroblastosis virus E-26 (v-ets) oncogene related	Erg	v-ets erythroblastosis virus E26 oncogene like (avian)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Erg	v-ets erythroblastosis virus E26 oncogene like (avian)			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Erg	v-ets erythroblastosis virus E26 oncogene like (avian)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI