Srebf1 (sterol regulatory element binding transcription factor 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Srebf1 (sterol regulatory element binding transcription factor 1) Heterocephalus glaber
Analyze
Symbol: Srebf1
Name: sterol regulatory element binding transcription factor 1
RGD ID: 18932912
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); cellular response to insulin stimulus (ortholog); cellular response to starvation (ortholog); PARTICIPATES IN mTOR signaling pathway; sterol regulatory element-binding protein signaling pathway; ASSOCIATED WITH alcoholic hepatitis (ortholog); atherosclerosis (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sterol regulatory element-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,602,261 - 3,623,465 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,602,103 - 3,623,922 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 35 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-Ratalcoholic hepatitis treatmentISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:27939985 and REF_RGD_ID:15036816
Srebf1Naked Mole-Ratatherosclerosis treatmentISOSrebf1 (Mus musculus)9068941 RGDPMID:23650230 more ...
Srebf1Naked Mole-Ratcoronary artery disease susceptibilityISOSREBF1 (Homo sapiens)9068941DNA:SNP and haplotype:: -36delG (human)RGDPMID:12752570 and REF_RGD_ID:401827912
Srebf1Naked Mole-Ratcoronary artery disease disease_progressionISOSREBF1 (Homo sapiens)9068941associated with type 2 diabetes mellitus and mRNA:increased expression:epicardial fat (human)RGDPMID:28367087 and REF_RGD_ID:401842368
Srebf1Naked Mole-Ratcoronary artery disease severityISOSREBF1 (Homo sapiens)9068941mRNA:decreased expression:blood serum (human)RGDPMID:31610782 and REF_RGD_ID:401842364
Srebf1Naked Mole-RatDiabetic Nephropathies  ISOSREBF1 (Homo sapiens)9068941 RGDPMID:17961514 and REF_RGD_ID:2308811
Srebf1Naked Mole-RatDiabetic Nephropathies  ISOSrebf1 (Mus musculus)9068941associated with Diabetes Mellitus and ExperimentalRGDPMID:17961514 and REF_RGD_ID:2308811
Srebf1Naked Mole-RatDiabetic Nephropathies  ISOSrebf1 (Mus musculus)9068941associated with Diabetes Mellitus more ...RGDPMID:16046298 and REF_RGD_ID:1581418
Srebf1Naked Mole-RatDiabetic Nephropathies  ISOSrebf1 (Mus musculus)9068941associated with Diabetes Mellitus more ...RGDPMID:16936198 and REF_RGD_ID:2308815
Srebf1Naked Mole-RatDiabetic Nephropathies  ISOSrebf1 (Rattus norvegicus)9068941associated with Diabetes Mellitus more ...RGDPMID:18613221 and REF_RGD_ID:2308806
Srebf1Naked Mole-Ratdiabetic neuropathy  ISOSrebf1 (Rattus norvegicus)9068941associated with Diabetes Mellitus and Insulin-DependentRGDPMID:19423844 and REF_RGD_ID:2308808
Srebf1Naked Mole-Ratdisease of metabolism susceptibilityISOSREBF1 (Homo sapiens)9068941DNA:SNPsRGDPMID:18692268 and REF_RGD_ID:2308809
Srebf1Naked Mole-Ratdisease of metabolism  ISOSrebf1 (Mus musculus)9068941mRNA and protein:decreased expression:liverRGDPMID:10600799 and REF_RGD_ID:1581420
Srebf1Naked Mole-RatExperimental Diabetes Mellitus  ISOSrebf1 (Rattus norvegicus)9068941mRNA more ...RGDPMID:19048273 and REF_RGD_ID:2308804
Srebf1Naked Mole-RatExperimental Diabetes Mellitus treatmentISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:32535406 and REF_RGD_ID:401850547
Srebf1Naked Mole-Ratfamilial hyperlipidemia treatmentISOSrebf1 (Mus musculus)9068941 RGDPMID:29197188 and REF_RGD_ID:401842366
Srebf1Naked Mole-RatFetal Growth Retardation  ISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:19017816 and REF_RGD_ID:2308805
Srebf1Naked Mole-RatHypercholesterolemia  ISOSrebf1 (Rattus norvegicus)9068941protein:altered localization:liverRGDPMID:16741953 and REF_RGD_ID:1581819
Srebf1Naked Mole-RatHypertriglyceridemia treatmentISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:26394137 and REF_RGD_ID:329955565
Srebf1Naked Mole-RatInsulin Resistance  ISOSrebf1 (Rattus norvegicus)9068941associated with Fatty Liver and mRNA:increased expression:liverRGDPMID:17241878 and REF_RGD_ID:2308807
1 to 20 of 35 rows
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-Ratautistic disorder  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Srebf1Naked Mole-RatBirt-Hogg-Dube syndrome  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Birt-Hogg-Dube syndromeClinVarPMID:20188345 and PMID:28492532
Srebf1Naked Mole-Ratcommon variable immunodeficiency 2  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency more ...ClinVarPMID:28492532
Srebf1Naked Mole-Ratgenetic disease  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
Srebf1Naked Mole-RatIchthyosis Follicularis, Atrichia, and Photophobia Syndrome 2  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: IFAP syndrome 2ClinVarPMID:25741868 more ...
Srebf1Naked Mole-Ratichthyosis follicularis-alopecia-photophobia syndrome 1  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: IFAP syndrome 1 and with or without BRESHECK syndromeClinVarPMID:25741868 more ...
Srebf1Naked Mole-RatJoubert syndrome 1  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial aplasia of the vermisClinVarPMID:28492532
Srebf1Naked Mole-Ratobesity  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: ObesityClinVarPMID:25741868
Srebf1Naked Mole-RatPotocki-Lupski syndrome  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Potocki-Lupski syndromeClinVarPMID:28837307
Srebf1Naked Mole-RatSmith-Magenis syndrome  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Smith-Magenis syndromeClinVarPMID:25087610
Srebf1Naked Mole-RatUrban Schosser Spohn Syndrome  ISOSREBF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary mucoepithelial dysplasiaClinVarPMID:25741868 more ...
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-Ratend stage renal disease  ISOSREBF1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:19878707
Srebf1Naked Mole-RatExperimental Diabetes Mellitus  ISOSREBF1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:10900012 and PMID:23090186
Srebf1Naked Mole-RatExperimental Liver Cirrhosis  ISOSREBF1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Srebf1Naked Mole-Rathepatocellular carcinoma  ISOSREBF1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:14563831 and PMID:21147110
Srebf1Naked Mole-RatInsulin Resistance  ISOSREBF1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:22658938
Srebf1Naked Mole-Ratmetabolic dysfunction-associated steatotic liver disease  ISOSREBF1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:23603006 and PMID:24633463
Srebf1Naked Mole-Ratsteatotic liver disease  ISOSREBF1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:24469900
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-RatIchthyosis Follicularis, Atrichia, and Photophobia Syndrome 2  ISOSREBF1 (Homo sapiens)7240710 OMIM 
Srebf1Naked Mole-RatUrban Schosser Spohn Syndrome  ISOSREBF1 (Homo sapiens)7240710 OMIM 


Biological Process
1 to 20 of 64 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-Ratcellular response to fatty acid  ISOSrebf1 (Rattus norvegicus)9068941palmitateRGDPMID:19332540 and REF_RGD_ID:7242708
Srebf1Naked Mole-Ratcellular response to insulin stimulus  ISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:10207099 more ...
Srebf1Naked Mole-Ratcellular response to starvation involved_inISOSrebf1 (Mus musculus)9068941 PMID:16407292HGNC-UCLPMID:16407292
Srebf1Naked Mole-Ratcellular response to starvation involved_inISOSrebf1 (Rattus norvegicus)9068941PMID:16407292HGNC-UCLPMID:16407292 and REF_RGD_ID:8553473
Srebf1Naked Mole-Ratcholesterol biosynthetic process acts_upstream_ofISOMGI:21779589068941 PMID:9329978MGIPMID:9329978
Srebf1Naked Mole-Ratcholesterol metabolic process  ISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:18071061 and REF_RGD_ID:1643359
Srebf1Naked Mole-Ratcholesterol metabolic process involved_inIEAUniProtKB-KW:KW-0153150520179 UniProtGO_REF:0000043
Srebf1Naked Mole-Ratcircadian rhythm involved_inISOSrebf1 (Mus musculus)9068941 PMID:19786558UniProtPMID:19786558
Srebf1Naked Mole-Ratfat cell differentiation acts_upstream_of_or_withinISOSrebf1 (Mus musculus)9068941 PMID:22331133MGIPMID:22331133
Srebf1Naked Mole-Ratinsulin receptor signaling pathway acts_upstream_of_or_withinISOSrebf1 (Mus musculus)9068941 PMID:17074803MGIPMID:17074803
Srebf1Naked Mole-Ratinsulin secretion acts_upstream_ofISOMGI:21777739068941 PMID:16890542MGIPMID:16890542
Srebf1Naked Mole-Ratlipid biosynthetic process involved_inISOSREBF1 (Homo sapiens)9068941 PMID:32497488UniProtPMID:32497488
Srebf1Naked Mole-Ratlipid biosynthetic process involved_inISOSrebf1 (Mus musculus)9068941 PMID:21459323UniProtPMID:21459323
Srebf1Naked Mole-Ratlipid metabolic process involved_inIEAUniProtKB-KW:KW-0443150520179 UniProtGO_REF:0000043
Srebf1Naked Mole-Ratlung development  ISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:12896875 and REF_RGD_ID:1304415
Srebf1Naked Mole-RatmRNA transcription by RNA polymerase II acts_upstream_of_or_withinISOSrebf1 (Mus musculus)9068941 PMID:22331133MGIPMID:22331133
Srebf1Naked Mole-Ratnegative regulation of insulin secretion acts_upstream_of_or_withinISOMGI:21777739068941 PMID:16890542MGIPMID:16890542
Srebf1Naked Mole-Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISOMGI:109128 more ...9068941 PMID:17636037MGIPMID:17636037
Srebf1Naked Mole-Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISOSrebf1 (Mus musculus)9068941 PMID:17074803MGIPMID:17074803
Srebf1Naked Mole-Ratnegative regulation of triglyceride metabolic process acts_upstream_ofISOSREBF1 (Homo sapiens)9068941 PMID:28483554BHF-UCLPMID:28483554
1 to 20 of 64 rows

Cellular Component
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-Ratcytoplasm located_inISOSrebf1 (Mus musculus)9068941 PMID:16100574 and PMID:21459323MGIPMID:16100574 and PMID:21459323
Srebf1Naked Mole-Ratcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-0968150520179 UniProtGO_REF:0000043
Srebf1Naked Mole-Ratcytoplasmic vesicle membrane located_inIEAUniProtKB-SubCell:SL-0089150520179 UniProtGO_REF:0000044
Srebf1Naked Mole-Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
Srebf1Naked Mole-Ratendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
Srebf1Naked Mole-RatER to Golgi transport vesicle membrane located_inIEAUniProtKB-SubCell:SL-0078150520179 UniProtGO_REF:0000044
Srebf1Naked Mole-RatGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
Srebf1Naked Mole-RatGolgi membrane located_inIEAUniProtKB-SubCell:SL-0134150520179 UniProtGO_REF:0000044
Srebf1Naked Mole-Ratmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
Srebf1Naked Mole-Ratnucleoplasm located_inISOSREBF1 (Homo sapiens)9068941 HPAGO_REF:0000052
Srebf1Naked Mole-Ratnucleus located_inIEAPANTHER:PTN000285910150520179 TreeGrafterGO_REF:0000118
Srebf1Naked Mole-Ratnucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
Srebf1Naked Mole-Ratnucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
Srebf1Naked Mole-Ratprotein-containing complex  ISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:19158095 and REF_RGD_ID:2308803
1 to 14 of 14 rows

Molecular Function
1 to 20 of 32 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-Ratchromatin binding  ISOSrebf1 (Rattus norvegicus)9068941 RGDPMID:19371623 and REF_RGD_ID:8693606
Srebf1Naked Mole-Ratchromatin binding enablesISOSrebf1 (Mus musculus)9068941 PMID:15637161 more ...MGIPMID:15637161 more ...
Srebf1Naked Mole-RatDNA binding enablesIEAUniProtKB-KW:KW-0238150520179 UniProtGO_REF:0000043
Srebf1Naked Mole-RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOSrebf1 (Rattus norvegicus)9068941PMID:16407292NTNU_SBPMID:16407292 and REF_RGD_ID:8553473
Srebf1Naked Mole-RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOSREBF1 (Homo sapiens)9068941 PMID:24296663 and PMID:31501273BHF-UCLPMID:24296663 and PMID:31501273
Srebf1Naked Mole-RatDNA-binding transcription factor activity enablesISOSREBF1 (Homo sapiens)9068941 PMID:16407292HGNC-UCLPMID:16407292
Srebf1Naked Mole-RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIEAPANTHER:PTN000285910150520179 TreeGrafterGO_REF:0000118
Srebf1Naked Mole-Ratnuclear receptor activity enablesISOSREBF1 (Homo sapiens)9068941 PMID:23610160ParkinsonsUK-UCLPMID:23610160
Srebf1Naked Mole-Ratprotein binding enablesISOPR:Q8VCZ79068941 PMID:22331133MGIPMID:22331133
Srebf1Naked Mole-Ratprotein binding enablesISOPR:P97496 more ...9068941 PMID:17074803MGIPMID:17074803
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q923E49068941 PMID:20817729IntActPMID:20817729
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:P19659 and UniProtKB:Q96RN59068941 PMID:18385733IntActPMID:18385733
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:P42858 and UniProtKB:P542539068941 PMID:32814053IntActPMID:32814053
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:P542539068941 PMID:16713569IntActPMID:16713569
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q92793 and UniProtKB:Q96RN59068941 PMID:16799563IntActPMID:16799563
Srebf1Naked Mole-Ratprotein binding enablesISOPR:Q9D0309068941 PMID:14654692MGIPMID:14654692
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:P535669068941 PMID:17290224UniProtPMID:17290224
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:P02545-19068941 PMID:21993218IntActPMID:21993218
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q132859068941 PMID:23610160ParkinsonsUK-UCLPMID:23610160
Srebf1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q96EB69068941 PMID:20817729IntActPMID:20817729
1 to 20 of 32 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-Ratsterol regulatory element-binding protein signaling pathway   ISOSREBF1 (Homo sapiens)9068941 RGDPMID:19933148 and REF_RGD_ID:2317203

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Srebf1Naked Mole-RatmTOR signaling pathway   ISOSREBF1 (Homo sapiens)9068941 PIDPID:200096
PMID:22301074   PMID:30032202  



Srebf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,602,261 - 3,623,465 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,602,103 - 3,623,922 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SREBF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,811,334 - 17,836,986 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,810,399 - 17,837,002 (-)EnsemblGRCh38hg38GRCh38
GRCh371717,714,648 - 17,740,300 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361717,656,111 - 17,681,050 (-)NCBINCBI36Build 36hg18NCBI36
Build 341717,656,110 - 17,681,050NCBI
Celera1718,654,135 - 18,680,982 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1717,466,908 - 17,494,061 (-)NCBIHuRef
CHM1_11717,723,458 - 17,749,109 (-)NCBICHM1_1
T2T-CHM13v2.01717,757,927 - 17,783,669 (-)NCBIT2T-CHM13v2.0
Srebf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,089,910 - 60,113,407 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,089,915 - 60,113,407 (-)EnsemblGRCm39 Ensembl
GRCm381160,199,084 - 60,224,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,199,089 - 60,222,581 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,012,591 - 60,034,106 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,015,284 - 60,036,799 (-)NCBIMGSCv36mm8
Celera1166,655,030 - 66,676,425 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
Srebf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,507,152 - 45,529,164 (-)NCBIGRCr8
mRatBN7.21045,007,637 - 45,029,650 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,007,637 - 45,029,650 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1049,707,833 - 49,729,854 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,198,201 - 49,220,219 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01044,701,803 - 44,723,821 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01046,570,996 - 46,593,021 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,570,996 - 46,593,009 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01046,326,015 - 46,348,035 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,461,684 - 46,483,646 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1044,264,866 - 44,286,830 (-)NCBICelera
Cytogenetic Map10q22NCBI
Srebf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955577171,425 - 186,046 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955577171,425 - 183,669 (+)NCBIChiLan1.0ChiLan1.0
SREBF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21952,328,005 - 52,355,769 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11757,040,217 - 57,065,965 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01733,458,196 - 33,484,643 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,405,794 - 38,432,045 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1738,405,794 - 38,432,045 (+)Ensemblpanpan1.1panPan2
SREBF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,663,809 - 41,686,764 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,663,773 - 41,686,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,802,335 - 41,825,236 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,769,693 - 41,792,654 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,769,687 - 41,925,702 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,737,352 - 41,760,245 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,684,736 - 41,707,631 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,876,687 - 41,899,587 (+)NCBIUU_Cfam_GSD_1.0
Srebf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,447,521 - 61,458,579 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367411,406,521 - 1,419,776 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367411,408,669 - 1,419,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SREBF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,733,907 - 60,751,267 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,733,967 - 60,750,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SREBF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11616,847,603 - 16,874,239 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1616,845,491 - 16,859,554 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660594,037,449 - 4,063,735 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.






Ensembl Acc Id: ENSHGLT00000027113   ⟹   ENSHGLP00000026874
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248493,602,261 - 3,623,465 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000027114   ⟹   ENSHGLP00000026875
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248493,602,261 - 3,623,465 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000027115   ⟹   ENSHGLP00000026876
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248493,602,261 - 3,623,465 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000027116   ⟹   ENSHGLP00000026877
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248493,613,001 - 3,623,465 (+)Ensembl
RefSeq Acc Id: XM_004868711   ⟹   XP_004868768
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248493,602,261 - 3,623,922 (+)NCBI
RefSeq Acc Id: XM_004868713   ⟹   XP_004868770
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248493,602,103 - 3,623,465 (+)NCBI
RefSeq Acc Id: XM_021247481   ⟹   XP_021103140
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248493,612,881 - 3,623,465 (+)NCBI
RefSeq Acc Id: XM_021247482   ⟹   XP_021103141
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248493,613,057 - 3,623,465 (+)NCBI
Protein RefSeqs XP_004868768 (Get FASTA)   NCBI Sequence Viewer  
  XP_004868770 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103140 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103141 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026874
  ENSHGLP00000026877
RefSeq Acc Id: XP_004868770   ⟸   XM_004868713
- Peptide Label: isoform X4
- UniProtKB: A0AAX6Q7T4 (UniProtKB/TrEMBL),   G5BMW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004868768   ⟸   XM_004868711
- Peptide Label: isoform X1
- UniProtKB: A0AAX6Q799 (UniProtKB/TrEMBL),   G5BMW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103140   ⟸   XM_021247481
- Peptide Label: isoform X2
- UniProtKB: A0AAX6S1R6 (UniProtKB/TrEMBL),   G5BMW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103141   ⟸   XM_021247482
- Peptide Label: isoform X3
- UniProtKB: A0AAX6S215 (UniProtKB/TrEMBL),   G5BMW6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026874   ⟸   ENSHGLT00000027113



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000019114 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027113 ENTREZGENE
  ENSHGLT00000027116 ENTREZGENE
Gene3D-CATH Helix-loop-helix DNA-binding domain UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Srebf1 ENTREZGENE
PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN UniProtKB/TrEMBL
  STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP HLH, helix-loop-helix DNA-binding domain UniProtKB/TrEMBL
UniProt A0AAX6Q799 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6Q7T4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S1R6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S215 ENTREZGENE, UniProtKB/TrEMBL
  G5BMW6 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows