Gc (GC vitamin D binding protein) - Rat Genome Database

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Gene: Gc (GC vitamin D binding protein) Heterocephalus glaber
Analyze
Symbol: Gc
Name: GC vitamin D binding protein
RGD ID: 18929040
Description: ENCODES a protein that exhibits calcidiol binding (ortholog); vitamin D binding (ortholog); INVOLVED IN female pregnancy (ortholog); lactation (ortholog); response to estradiol (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); Acute Liver Failure (ortholog); AIDS Dementia Complex (ortholog); FOUND IN axon (ortholog); extracellular space (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Vitamin D-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248903,226,900 - 3,318,316 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248903,274,239 - 3,318,281 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248903,226,900 - 3,318,316 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248903,274,239 - 3,318,281 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38471,741,693 - 71,805,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl471,741,696 - 71,804,041 (-)EnsemblGRCh38hg38GRCh38
GRCh37472,607,410 - 72,671,237 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36472,826,274 - 72,868,752 (-)NCBINCBI36Build 36hg18NCBI36
Build 34472,972,446 - 73,014,923NCBI
Celera469,964,129 - 70,006,624 (-)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef468,412,706 - 68,476,557 (-)NCBIHuRef
CHM1_1472,643,398 - 72,707,216 (-)NCBICHM1_1
T2T-CHM13v2.0475,084,117 - 75,147,957 (-)NCBIT2T-CHM13v2.0
Gc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39589,565,370 - 89,605,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl589,565,381 - 89,605,757 (-)EnsemblGRCm39 Ensembl
GRCm38589,417,511 - 89,457,898 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl589,417,522 - 89,457,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv37589,846,547 - 89,886,790 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36590,492,721 - 90,532,964 (-)NCBIMGSCv36mm8
Celera587,554,559 - 87,593,435 (-)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.32NCBI
Gc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81418,916,255 - 18,951,670 (+)NCBIGRCr8
mRatBN7.21418,632,146 - 18,667,563 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1418,632,135 - 18,667,567 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1418,622,611 - 18,658,030 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01419,941,501 - 19,976,920 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01418,653,131 - 18,688,560 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01420,267,023 - 20,302,577 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1420,266,891 - 20,302,581 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01420,173,467 - 20,209,021 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41420,166,243 - 20,197,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11420,166,180 - 20,201,613 (+)NCBI
Celera1417,992,337 - 18,027,605 (+)NCBICelera
Cytogenetic Map14p22NCBI
Gc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554471,361,566 - 1,402,491 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554471,361,698 - 1,400,633 (+)NCBIChiLan1.0ChiLan1.0
GC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2358,270,055 - 58,332,433 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1458,466,887 - 58,529,283 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0452,431,196 - 52,473,762 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1458,749,384 - 58,792,073 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl458,729,236 - 58,792,073 (+)Ensemblpanpan1.1panPan2
GC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11360,795,305 - 60,828,038 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1360,795,305 - 60,827,929 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1360,528,533 - 60,561,906 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01361,603,086 - 61,636,545 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1361,603,088 - 61,652,533 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11361,215,897 - 61,249,598 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01360,708,804 - 60,742,244 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01361,856,182 - 61,889,922 (-)NCBIUU_Cfam_GSD_1.0
Gc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528514,767,874 - 14,809,615 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365983,219,991 - 3,261,629 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365983,220,029 - 3,256,091 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl868,326,299 - 68,360,262 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1868,326,293 - 68,360,262 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2872,227,896 - 72,261,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1720,254,604 - 20,298,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl720,253,879 - 20,298,265 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660842,553,410 - 2,596,840 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002413   ⟹   ENSHGLP00000002364
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248903,226,900 - 3,318,316 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000002414   ⟹   ENSHGLP00000002365
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248903,277,794 - 3,318,316 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000002415   ⟹   ENSHGLP00000002366
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248903,281,247 - 3,318,316 (-)Ensembl
RefSeq Acc Id: XM_004871747   ⟹   XP_004871804
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248903,274,239 - 3,318,281 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004871804 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB07564 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002364
  ENSHGLP00000002365
  ENSHGLP00100041132
RefSeq Acc Id: XP_004871804   ⟸   XM_004871747
- UniProtKB: G5BE53 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002365   ⟸   ENSHGLT00000002414
Ensembl Acc Id: ENSHGLP00000002366   ⟸   ENSHGLT00000002415
Ensembl Acc Id: ENSHGLP00000002364   ⟸   ENSHGLT00000002413


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001794 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100011140 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002413 UniProtKB/TrEMBL
  ENSHGLT00000002414 ENTREZGENE
  ENSHGLT00100070160 UniProtKB/TrEMBL
Gene3D-CATH 1.10.246.10 UniProtKB/TrEMBL
InterPro ALB/AFP/VDB UniProtKB/TrEMBL
  Serum_albumin-like UniProtKB/TrEMBL
  Serum_albumin_CS UniProtKB/TrEMBL
  Serum_albumin_N UniProtKB/TrEMBL
  VitD-bd UniProtKB/TrEMBL
  VitD-bind_III UniProtKB/TrEMBL
NCBI Gene Gc ENTREZGENE
PANTHER SERUM ALBUMIN-RELATED UniProtKB/TrEMBL
  VITAMIN D-BINDING PROTEIN UniProtKB/TrEMBL
Pfam Serum_albumin UniProtKB/TrEMBL
  VitD-bind_III UniProtKB/TrEMBL
PRINTS SERUMALBUMIN UniProtKB/TrEMBL
  VITAMNDBNDNG UniProtKB/TrEMBL
PROSITE ALBUMIN_1 UniProtKB/TrEMBL
  ALBUMIN_2 UniProtKB/TrEMBL
SMART ALBUMIN UniProtKB/TrEMBL
Superfamily-SCOP Serum albumin-like UniProtKB/TrEMBL
UniProt G5BE53 ENTREZGENE, UniProtKB/TrEMBL