Symbol:
LRAT
Name:
lecithin retinol acyltransferase
RGD ID:
18574285
Description:
ENCODES a protein that exhibits phosphatidylcholine-retinol O-acyltransferase activity (ortholog); retinoic acid binding (ortholog); retinol binding (ortholog); INVOLVED IN response to retinoic acid (ortholog); response to vitamin A (ortholog); retinol metabolic process (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoic acid metabolic pathway; ASSOCIATED WITH breast ductal carcinoma (ortholog); celiac disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN multivesicular body (ortholog); perinuclear region of cytoplasm (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 7 101,297,114 - 101,304,675 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 7 101,297,691 - 101,302,520 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666037 80,952,291 - 80,959,916 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
LRAT Green Monkey breast ductal carcinoma ISO RGD:68515 8554872 ClinVar Annotator: match by term: Ductal breast carcinoma ClinVar LRAT Green Monkey cone-rod dystrophy ISO RGD:68515 8554872 ClinVar Annotator: match by term: Rod-cone dystrophy ClinVar PMID:25741868 LRAT Green Monkey Eye Abnormalities ISO RGD:68515 8554872 ClinVar Annotator: match by term: Abnormality of the eye ClinVar PMID:25741868 LRAT Green Monkey fundus dystrophy ISO RGD:68515 8554872 ClinVar Annotator: match by term: Retinal dystrophy ClinVar PMID:21217109|PMID:22559933|PMID:24265693|PMID:25741868|PMID:28492532|PMID:3144818 LRAT Green Monkey genetic disease ISO RGD:68515 8554872 ClinVar Annotator: match by term: Inborn genetic diseases ClinVar PMID:25741868|PMID:28492532 LRAT Green Monkey invasive ductal carcinoma ISO RGD:68515 8554872 ClinVar Annotator: match by term: Breast cancer, invasive ductal ClinVar LRAT Green Monkey Leber congenital amaurosis ISO RGD:68515 8554872 ClinVar Annotator: match by term: Leber congenital amaurosis ClinVar PMID:24033266|PMID:25741868|PMID:28492532|PMID:37510321 LRAT Green Monkey Leber congenital amaurosis 1 ISO RGD:68515 8554872 ClinVar Annotator: match by term: Leber congenital amaurosis 1 ClinVar PMID:25324289|PMID:25472526|PMID:25741868|PMID:28492532|PMID:29186038|PMID:29844330|PMID:30190494|PMID:32865313 LRAT Green Monkey Leber congenital amaurosis 14 ISO RGD:68515 8554872 ClinVar Annotator: match by term: LRAT-related condition | ClinVar Annotator: match by term: Leber congenital more ... ClinVar PMID:11381255|PMID:17011878|PMID:18055821|PMID:22025579|PMID:22559933|PMID:22570351|PMID:24265693|PMID:25741868|PMID:26656277|PMID:27854360|PMID:28492532|PMID:29186038|PMID:30054919|PMID:32865313|PMID:34828430 LRAT Green Monkey retinitis pigmentosa ISO RGD:68515 8554872 ClinVar Annotator: match by term: Autosomal recessive retinitis pigmentosa | ClinVar Annotator: match by term: more ... ClinVar PMID:22025579|PMID:25324289|PMID:25741868|PMID:26355662|PMID:28492532|PMID:29844330|PMID:30054919|PMID:30190494|PMID:30718709
Imported Annotations - SMPDB
LRAT Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 7 101,297,114 - 101,304,675 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 7 101,297,691 - 101,302,520 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666037 80,952,291 - 80,959,916 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
LRAT Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 4 154,740,838 - 154,753,120 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 4 154,626,945 - 154,753,120 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 4 155,661,990 - 155,674,272 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 4 155,884,613 - 155,893,720 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 4 156,022,767 - 156,031,875 NCBI Celera 4 152,996,143 - 153,005,248 (+) NCBI Celera Cytogenetic Map 4 q32.1 NCBI HuRef 4 151,405,746 - 151,414,958 (+) NCBI HuRef CHM1_1 4 155,643,059 - 155,652,147 (+) NCBI CHM1_1 T2T-CHM13v2.0 4 158,072,645 - 158,084,927 (+) NCBI T2T-CHM13v2.0
Lrat Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 82,799,889 - 82,811,281 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 82,799,886 - 82,811,280 (-) Ensembl GRCm39 Ensembl GRCm38 3 82,892,582 - 82,903,974 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 82,892,579 - 82,903,973 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 3 82,696,504 - 82,707,896 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 3 82,978,509 - 82,989,901 (-) NCBI MGSCv36 mm8 Celera 3 82,903,193 - 82,914,568 (-) NCBI Celera Cytogenetic Map 3 E3 NCBI cM Map 3 36.81 NCBI
Lrat Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 170,562,148 - 170,571,212 (-) NCBI GRCr8 mRatBN7.2 2 168,264,093 - 168,273,155 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 168,266,877 - 168,273,619 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 175,454,144 - 175,463,229 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 173,475,076 - 173,484,161 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 168,076,492 - 168,085,579 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 181,896,304 - 181,905,366 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 181,896,305 - 181,905,300 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 201,310,924 - 201,319,986 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 174,636,382 - 174,645,444 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 174,586,488 - 174,595,550 (-) NCBI Celera 2 162,290,825 - 162,299,887 (-) NCBI Celera Cytogenetic Map 2 q34 NCBI
Lrat Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955471 2,603,678 - 2,609,079 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955471 2,603,395 - 2,610,988 (+) NCBI ChiLan1.0 ChiLan1.0
LRAT Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 3 152,653,378 - 152,665,654 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 4 153,008,750 - 153,021,026 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 4 147,110,568 - 147,119,706 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 4 158,928,607 - 158,937,747 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 4 158,928,607 - 158,937,747 (+) Ensembl panpan1.1 panPan2
LRAT Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 15 52,399,773 - 52,409,590 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 15 52,399,544 - 52,406,176 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 15 52,744,532 - 52,752,466 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 15 53,086,516 - 53,094,290 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 15 53,087,735 - 53,096,027 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 15 52,341,249 - 52,349,017 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 15 52,447,030 - 52,454,972 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 15 52,762,096 - 52,769,963 (+) NCBI UU_Cfam_GSD_1.0
Lrat Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405301 38,044,997 - 38,054,957 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936576 1,492,297 - 1,501,917 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936576 1,491,480 - 1,498,568 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
LRAT Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 8 74,409,461 - 74,419,681 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 8 74,412,226 - 74,428,713 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 8 78,710,192 - 78,726,673 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
Lrat
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCSAT00000001290 ⟹ ENSCSAP00000014784
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 Ensembl 7 101,297,691 - 101,302,520 (+) Ensembl
RefSeq Acc Id:
XM_037993123 ⟹ XP_037849051
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source Vero_WHO_p1.0 NW_023666037 80,952,291 - 80,959,916 (+) NCBI
Ensembl Acc Id:
ENSCSAP00000014784 ⟸ ENSCSAT00000001290
RefSeq Acc Id:
XP_037849051 ⟸ XM_037993123
