PTPN7 (protein tyrosine phosphatase non-receptor type 7) - Rat Genome Database

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Gene: PTPN7 (protein tyrosine phosphatase non-receptor type 7) Homo sapiens
Analyze
Symbol: PTPN7
Name: protein tyrosine phosphatase non-receptor type 7
RGD ID: 1605720
HGNC Page HGNC
Description: Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Located in cytoplasmic side of plasma membrane; cytosol; and mitotic spindle.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: BPTP-4; dual specificity phosphatase 1; FLJ18703; hematopoietic protein-tyrosine phosphatase; HEPTP; LC-PTP; LPTP; protein-tyrosine phosphatase LC-PTP; protein-tyrosine phosphatase, nonreceptor-type, stress induced; PTPNI; tyrosine-protein phosphatase non-receptor type 7
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1202,147,013 - 202,161,588 (-)EnsemblGRCh38hg38GRCh38
GRCh381202,147,012 - 202,161,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371202,116,141 - 202,130,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,382,766 - 200,396,374 (-)NCBINCBI36hg18NCBI36
Celera1175,240,001 - 175,253,609 (-)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1173,281,692 - 173,296,269 (-)NCBIHuRef
CHM1_11203,538,425 - 203,553,000 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

Additional References at PubMed
PMID:1370651   PMID:1510684   PMID:1530918   PMID:7545170   PMID:8125298   PMID:8309248   PMID:9624114   PMID:10206983   PMID:10415025   PMID:10559944   PMID:10702794   PMID:10940933  
PMID:11704759   PMID:12056917   PMID:12058348   PMID:12161469   PMID:12413699   PMID:12477932   PMID:12583813   PMID:12592337   PMID:14613483   PMID:15489334   PMID:16226275   PMID:16441242  
PMID:19053285   PMID:19167335   PMID:19299420   PMID:20668459   PMID:21832049   PMID:21873635   PMID:23535733   PMID:25241761   PMID:25416956   PMID:27432908   PMID:27880917   PMID:28065597  
PMID:28330616   PMID:28675297   PMID:31266805   PMID:32031713   PMID:32296183   PMID:32393512  


Genomics

Comparative Map Data
PTPN7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1202,147,013 - 202,161,588 (-)EnsemblGRCh38hg38GRCh38
GRCh381202,147,012 - 202,161,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371202,116,141 - 202,130,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,382,766 - 200,396,374 (-)NCBINCBI36hg18NCBI36
Celera1175,240,001 - 175,253,609 (-)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1173,281,692 - 173,296,269 (-)NCBIHuRef
CHM1_11203,538,425 - 203,553,000 (-)NCBICHM1_1
Ptpn7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,059,577 - 135,073,064 (+)NCBIGRCm39mm39
GRCm39 Ensembl1135,060,438 - 135,073,055 (+)Ensembl
GRCm381135,131,838 - 135,145,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,132,700 - 135,145,317 (+)EnsemblGRCm38mm10GRCm38
MGSCv371137,029,302 - 137,041,897 (+)NCBIGRCm37mm9NCBIm37
MGSCv361136,949,136 - 136,961,731 (+)NCBImm8
Celera1137,759,680 - 137,772,179 (+)NCBICelera
Cytogenetic Map1E4NCBI
Ptpn7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21346,570,904 - 46,584,048 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1346,571,712 - 46,583,308 (+)Ensembl
Rnor_6.01351,958,023 - 51,971,431 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,958,834 - 51,972,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,009,427 - 57,023,148 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,094,119 - 48,105,707 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11348,108,161 - 48,119,750 (+)NCBI
Celera1346,897,613 - 46,908,578 (+)NCBICelera
Cytogenetic Map13q13NCBI
Ptpn7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,232,589 - 38,250,195 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540638,233,409 - 38,249,940 (-)NCBIChiLan1.0ChiLan1.0
PTPN7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11182,047,418 - 182,061,889 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,049,084 - 182,061,151 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01177,744,963 - 177,759,611 (-)NCBIMhudiblu_PPA_v0panPan3
PTPN7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17859,124 - 869,168 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7859,214 - 869,183 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7911,497 - 921,564 (+)NCBI
ROS_Cfam_1.07867,172 - 877,245 (+)NCBI
ROS_Cfam_1.0 Ensembl7867,266 - 877,241 (+)Ensembl
UMICH_Zoey_3.17855,561 - 865,624 (+)NCBI
UNSW_CanFamBas_1.07963,852 - 973,174 (+)NCBI
UU_Cfam_GSD_1.07987,836 - 997,900 (+)NCBI
Ptpn7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,146,132 - 73,158,479 (+)NCBI
SpeTri2.0NW_0049365672,381,519 - 2,392,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPN7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,324,436 - 24,336,419 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11024,325,289 - 24,336,426 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,744,132 - 28,748,147 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPN7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,243,907 - 27,258,088 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605528,023,104 - 28,038,993 (+)NCBIVero_WHO_p1.0
Ptpn7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248078,575,414 - 8,593,063 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH93215  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371202,116,152 - 202,116,287UniSTSGRCh37
Build 361200,382,775 - 200,382,910RGDNCBI36
Celera1175,240,010 - 175,240,145RGD
Cytogenetic Map1q32.1UniSTS
HuRef1173,281,703 - 173,281,838UniSTS
GeneMap99-GB4 RH Map1667.19UniSTS
SHGC-147757  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371202,129,975 - 202,130,295UniSTSGRCh37
Build 361200,396,598 - 200,396,918RGDNCBI36
Celera1175,253,833 - 175,254,153RGD
Cytogenetic Map1q32.1UniSTS
HuRef1173,295,528 - 173,295,848UniSTS
TNG Radiation Hybrid Map143806.0UniSTS
RH68192  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371202,116,391 - 202,116,641UniSTSGRCh37
GRCh37X3,384,725 - 3,385,471UniSTSGRCh37
Build 361200,383,014 - 200,383,264RGDNCBI36
Celera1175,240,249 - 175,240,499RGD
Cytogenetic Map1q32.1UniSTS
HuRefX1,339,209 - 1,339,959UniSTS
HuRef1173,281,942 - 173,282,192UniSTS
GeneMap99-GB4 RH Map1667.19UniSTS
NCBI RH Map11766.8UniSTS
SHGC-155354  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371202,130,481 - 202,130,781UniSTSGRCh37
Build 361200,397,104 - 200,397,404RGDNCBI36
Celera1175,254,339 - 175,254,639RGD
Cytogenetic Map1q32.1UniSTS
HuRef1173,296,034 - 173,296,334UniSTS
TNG Radiation Hybrid Map143817.0UniSTS
D1S3298  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371202,116,202 - 202,116,446UniSTSGRCh37
Build 361200,382,825 - 200,383,069RGDNCBI36
Celera1175,240,060 - 175,240,304RGD
Cytogenetic Map1q32.1UniSTS
HuRef1173,281,753 - 173,281,997UniSTS
GeneMap99-GB4 RH Map1666.51UniSTS
NCBI RH Map11681.1UniSTS
GeneMap99-G3 RH Map17704.0UniSTS
D15S1390  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map7p13UniSTS
D10S16   No map positions available.
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map14q31-q32.1UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map20p11.23-p11.21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map19q12UniSTS
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Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS
D10S16  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map3p22UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map5q21-q22UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map4q34UniSTS
Cytogenetic Map2p22-p21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map1p36.23UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map11p15.3-p15.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map12p12.1-p11.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq23UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map17qterUniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map3p23-p21UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1p36.1-p34UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map15q24.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map3p23UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map19qterUniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map17pUniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map3q26.2UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR126hsa-miR-126-3pMirtarbaseexternal_infoFlow//Immunoprecipitaion//Luciferase reporter assaFunctional MTI21163928
MIR126hsa-miR-126-5pMirtarbaseexternal_infoFlow//Immunoprecipitaion//Luciferase reporter assaFunctional MTI21163928

Predicted Target Of
Summary Value
Count of predictions:8568
Count of miRNA genes:1107
Interacting mature miRNAs:1389
Transcripts:ENST00000308986, ENST00000309017, ENST00000367279, ENST00000435759, ENST00000462815, ENST00000464870, ENST00000467283, ENST00000468385, ENST00000476061, ENST00000477554, ENST00000477625, ENST00000479092, ENST00000480836, ENST00000486116, ENST00000491584, ENST00000492451, ENST00000492977, ENST00000495688, ENST00000496197, ENST00000543735, ENST00000544762
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 122 623 137 8 1683 8 10 5 201 12 408 184 5 1
Low 1996 1276 1381 517 252 359 2666 857 1785 324 876 1181 160 1 1141 1533 3 1
Below cutoff 253 1092 188 86 10 81 1622 1302 1694 54 111 127 7 58 1251 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001199797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_002832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_080588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_037663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_037664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_921906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF394064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG340453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT009848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D11327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC399028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S78090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000309017   ⟹   ENSP00000309116
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,147,013 - 202,161,581 (-)Ensembl
RefSeq Acc Id: ENST00000367279   ⟹   ENSP00000356248
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,147,013 - 202,159,991 (-)Ensembl
RefSeq Acc Id: ENST00000435759   ⟹   ENSP00000406042
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,155,561 - 202,160,608 (-)Ensembl
RefSeq Acc Id: ENST00000462815   ⟹   ENSP00000419196
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,148,213 - 202,160,608 (-)Ensembl
RefSeq Acc Id: ENST00000464870   ⟹   ENSP00000420434
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,155,537 - 202,160,608 (-)Ensembl
RefSeq Acc Id: ENST00000467283   ⟹   ENSP00000418837
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,155,537 - 202,160,608 (-)Ensembl
RefSeq Acc Id: ENST00000468385
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,158,458 - 202,160,608 (-)Ensembl
RefSeq Acc Id: ENST00000476061   ⟹   ENSP00000419993
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,154,239 - 202,160,602 (-)Ensembl
RefSeq Acc Id: ENST00000477554   ⟹   ENSP00000418416
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,148,500 - 202,161,581 (-)Ensembl
RefSeq Acc Id: ENST00000477625   ⟹   ENSP00000418129
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,152,538 - 202,160,644 (-)Ensembl
RefSeq Acc Id: ENST00000479092
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,154,186 - 202,160,615 (-)Ensembl
RefSeq Acc Id: ENST00000480836   ⟹   ENSP00000419733
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,148,439 - 202,160,615 (-)Ensembl
RefSeq Acc Id: ENST00000486116   ⟹   ENSP00000417350
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,155,581 - 202,160,608 (-)Ensembl
RefSeq Acc Id: ENST00000491584
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,157,964 - 202,160,605 (-)Ensembl
RefSeq Acc Id: ENST00000492451   ⟹   ENSP00000417410
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,158,118 - 202,161,588 (-)Ensembl
RefSeq Acc Id: ENST00000492977
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,149,851 - 202,158,569 (-)Ensembl
RefSeq Acc Id: ENST00000495688   ⟹   ENSP00000420506
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,147,015 - 202,160,594 (-)Ensembl
RefSeq Acc Id: ENST00000496197   ⟹   ENSP00000419523
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,148,289 - 202,160,608 (-)Ensembl
RefSeq Acc Id: ENST00000629151   ⟹   ENSP00000485691
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,153,766 - 202,160,578 (-)Ensembl
RefSeq Acc Id: ENST00000691036   ⟹   ENSP00000509436
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1202,147,016 - 202,160,602 (-)Ensembl
RefSeq Acc Id: NM_001199797   ⟹   NP_001186726
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,016 - 202,161,588 (-)NCBI
GRCh371202,116,141 - 202,130,716 (-)ENTREZGENE
HuRef1173,281,692 - 173,296,269 (-)ENTREZGENE
CHM1_11203,538,425 - 203,553,000 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001364877   ⟹   NP_001351806
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,016 - 202,161,588 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001364878   ⟹   NP_001351807
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,013 - 202,159,454 (-)NCBI
Sequence:
RefSeq Acc Id: NM_002832   ⟹   NP_002823
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,016 - 202,160,602 (-)NCBI
GRCh371202,116,141 - 202,130,716 (-)ENTREZGENE
Build 361200,382,766 - 200,396,374 (-)NCBI Archive
HuRef1173,281,692 - 173,296,269 (-)ENTREZGENE
CHM1_11203,538,425 - 203,553,000 (-)NCBI
Sequence:
RefSeq Acc Id: NM_080588   ⟹   NP_542155
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,016 - 202,159,989 (-)NCBI
GRCh371202,116,141 - 202,130,716 (-)ENTREZGENE
Build 361200,382,766 - 200,395,742 (-)NCBI Archive
HuRef1173,281,692 - 173,296,269 (-)ENTREZGENE
CHM1_11203,538,425 - 203,551,403 (-)NCBI
Sequence:
RefSeq Acc Id: NR_037663
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,013 - 202,161,588 (-)NCBI
GRCh371202,116,141 - 202,130,716 (-)ENTREZGENE
HuRef1173,281,692 - 173,296,269 (-)ENTREZGENE
CHM1_11203,538,425 - 203,553,000 (-)NCBI
Sequence:
RefSeq Acc Id: NR_037664
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,013 - 202,161,588 (-)NCBI
GRCh371202,116,141 - 202,130,716 (-)ENTREZGENE
HuRef1173,281,692 - 173,296,269 (-)ENTREZGENE
CHM1_11203,538,425 - 203,553,000 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509819   ⟹   XP_011508121
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,160,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509820   ⟹   XP_011508122
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,161,582 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509821   ⟹   XP_011508123
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,160,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509822   ⟹   XP_011508124
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,160,592 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509823   ⟹   XP_011508125
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,153,758 - 202,160,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509824   ⟹   XP_011508126
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,160,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017001935   ⟹   XP_016857424
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,160,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017001936   ⟹   XP_016857425
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,160,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024448711   ⟹   XP_024304479
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,161,583 (-)NCBI
Sequence:
RefSeq Acc Id: XR_921906
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,147,012 - 202,160,923 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001186726 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351806 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351807 (Get FASTA)   NCBI Sequence Viewer  
  NP_002823 (Get FASTA)   NCBI Sequence Viewer  
  NP_542155 (Get FASTA)   NCBI Sequence Viewer  
  XP_011508121 (Get FASTA)   NCBI Sequence Viewer  
  XP_011508122 (Get FASTA)   NCBI Sequence Viewer  
  XP_011508123 (Get FASTA)   NCBI Sequence Viewer  
  XP_011508124 (Get FASTA)   NCBI Sequence Viewer  
  XP_011508125 (Get FASTA)   NCBI Sequence Viewer  
  XP_011508126 (Get FASTA)   NCBI Sequence Viewer  
  XP_016857424 (Get FASTA)   NCBI Sequence Viewer  
  XP_016857425 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304479 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA59531 (Get FASTA)   NCBI Sequence Viewer  
  AAH01746 (Get FASTA)   NCBI Sequence Viewer  
  AAM69538 (Get FASTA)   NCBI Sequence Viewer  
  AAP88850 (Get FASTA)   NCBI Sequence Viewer  
  BAA01946 (Get FASTA)   NCBI Sequence Viewer  
  BAG54453 (Get FASTA)   NCBI Sequence Viewer  
  BAG56727 (Get FASTA)   NCBI Sequence Viewer  
  BAG62662 (Get FASTA)   NCBI Sequence Viewer  
  BAG63218 (Get FASTA)   NCBI Sequence Viewer  
  BAG63388 (Get FASTA)   NCBI Sequence Viewer  
  BAG64051 (Get FASTA)   NCBI Sequence Viewer  
  EAW91400 (Get FASTA)   NCBI Sequence Viewer  
  EAW91401 (Get FASTA)   NCBI Sequence Viewer  
  EAW91402 (Get FASTA)   NCBI Sequence Viewer  
  EAW91403 (Get FASTA)   NCBI Sequence Viewer  
  EAW91404 (Get FASTA)   NCBI Sequence Viewer  
  EAW91405 (Get FASTA)   NCBI Sequence Viewer  
  P35236 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001186726   ⟸   NM_001199797
- Peptide Label: isoform 3
- UniProtKB: B4DZD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_002823   ⟸   NM_002832
- Peptide Label: isoform 1
- Sequence:
RefSeq Acc Id: NP_542155   ⟸   NM_080588
- Peptide Label: isoform 2
- UniProtKB: P35236 (UniProtKB/Swiss-Prot),   A0A024R9A7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011508122   ⟸   XM_011509820
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011508121   ⟸   XM_011509819
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011508124   ⟸   XM_011509822
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011508126   ⟸   XM_011509824
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_011508123   ⟸   XM_011509821
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011508125   ⟸   XM_011509823
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_016857425   ⟸   XM_017001936
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016857424   ⟸   XM_017001935
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024304479   ⟸   XM_024448711
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001351807   ⟸   NM_001364878
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001351806   ⟸   NM_001364877
- Peptide Label: isoform 4
RefSeq Acc Id: ENSP00000419196   ⟸   ENST00000462815
RefSeq Acc Id: ENSP00000418129   ⟸   ENST00000477625
RefSeq Acc Id: ENSP00000418416   ⟸   ENST00000477554
RefSeq Acc Id: ENSP00000420434   ⟸   ENST00000464870
RefSeq Acc Id: ENSP00000309116   ⟸   ENST00000309017
RefSeq Acc Id: ENSP00000418837   ⟸   ENST00000467283
RefSeq Acc Id: ENSP00000417410   ⟸   ENST00000492451
RefSeq Acc Id: ENSP00000419733   ⟸   ENST00000480836
RefSeq Acc Id: ENSP00000420506   ⟸   ENST00000495688
RefSeq Acc Id: ENSP00000419523   ⟸   ENST00000496197
RefSeq Acc Id: ENSP00000485691   ⟸   ENST00000629151
RefSeq Acc Id: ENSP00000356248   ⟸   ENST00000367279
RefSeq Acc Id: ENSP00000417350   ⟸   ENST00000486116
RefSeq Acc Id: ENSP00000406042   ⟸   ENST00000435759
RefSeq Acc Id: ENSP00000419993   ⟸   ENST00000476061
RefSeq Acc Id: ENSP00000509436   ⟸   ENST00000691036
Promoters
RGD ID:6786349
Promoter ID:HG_KWN:6816
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:OTTHUMT00000087515
Position:
Human AssemblyChrPosition (strand)Source
Build 361200,393,901 - 200,395,012 (-)MPROMDB
RGD ID:6786350
Promoter ID:HG_KWN:6817
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000367279
Position:
Human AssemblyChrPosition (strand)Source
Build 361200,395,041 - 200,396,267 (-)MPROMDB
RGD ID:6786352
Promoter ID:HG_KWN:6818
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000308986,   OTTHUMT00000087516,   UC001GXN.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361200,396,306 - 200,398,107 (-)MPROMDB
RGD ID:6858576
Promoter ID:EPDNEW_H2453
Type:initiation region
Name:PTPN7_2
Description:protein tyrosine phosphatase, non-receptor type 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2454  EPDNEW_H2455  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,159,989 - 202,160,049EPDNEW
RGD ID:6858578
Promoter ID:EPDNEW_H2454
Type:initiation region
Name:PTPN7_1
Description:protein tyrosine phosphatase, non-receptor type 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2453  EPDNEW_H2455  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,160,602 - 202,160,662EPDNEW
RGD ID:6858638
Promoter ID:EPDNEW_H2455
Type:initiation region
Name:PTPN7_3
Description:protein tyrosine phosphatase, non-receptor type 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2453  EPDNEW_H2454  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381202,161,553 - 202,161,613EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11
pathogenic
NM_001199797.1(PTPN7):c.1020C>T (p.Pro340=) single nucleotide variant Malignant melanoma [RCV000064458] Chr1:202152619 [GRCh38]
Chr1:202121747 [GRCh37]
Chr1:200388370 [NCBI36]
Chr1:1q32.1
not provided
NM_080588.2(PTPN7):c.24C>T (p.Ile8=) single nucleotide variant Malignant melanoma [RCV000060047] Chr1:202159496 [GRCh38]
Chr1:202128624 [GRCh37]
Chr1:200395247 [NCBI36]
Chr1:1q32.1
not provided
GRCh38/hg38 1q32.1(chr1:200144603-203112078)x1 copy number loss See cases [RCV000133625] Chr1:200144603..203112078 [GRCh38]
Chr1:200113731..203081206 [GRCh37]
Chr1:198380354..201347829 [NCBI36]
Chr1:1q32.1
pathogenic
GRCh37/hg19 1q31.3-42.13(chr1:197811907-228997888)x3 copy number gain See cases [RCV000240137] Chr1:197811907..228997888 [GRCh37]
Chr1:1q31.3-42.13
pathogenic
GRCh37/hg19 1q31.3-44(chr1:195483439-249213000)x3 copy number gain See cases [RCV000449172] Chr1:195483439..249213000 [GRCh37]
Chr1:1q31.3-44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q25.3-41(chr1:185644663-221698833)x3 copy number gain not provided [RCV000749265] Chr1:185644663..221698833 [GRCh37]
Chr1:1q25.3-41
pathogenic
GRCh37/hg19 1q25.3-44(chr1:182388773-249111240)x3 copy number gain not provided [RCV000845852] Chr1:182388773..249111240 [GRCh37]
Chr1:1q25.3-44
pathogenic
GRCh37/hg19 1q31.3-32.2(chr1:194356425-210988710)x3 copy number gain not provided [RCV001249273] Chr1:194356425..210988710 [GRCh37]
Chr1:1q31.3-32.2
not provided
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stroma tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:9659 AgrOrtholog
COSMIC PTPN7 COSMIC
Ensembl Genes ENSG00000143851 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000309116 UniProtKB/Swiss-Prot
  ENSP00000356248 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000406042 UniProtKB/TrEMBL
  ENSP00000417350 UniProtKB/TrEMBL
  ENSP00000417410 UniProtKB/TrEMBL
  ENSP00000418129 UniProtKB/TrEMBL
  ENSP00000418416 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000418837 UniProtKB/TrEMBL
  ENSP00000419196 UniProtKB/TrEMBL
  ENSP00000419523 UniProtKB/TrEMBL
  ENSP00000419733 UniProtKB/TrEMBL
  ENSP00000419993 UniProtKB/TrEMBL
  ENSP00000420434 UniProtKB/TrEMBL
  ENSP00000420506 UniProtKB/Swiss-Prot
  ENSP00000485691 UniProtKB/TrEMBL
  ENSP00000509436 ENTREZGENE
Ensembl Transcript ENST00000309017 UniProtKB/Swiss-Prot
  ENST00000367279 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000435759 UniProtKB/TrEMBL
  ENST00000462815 UniProtKB/TrEMBL
  ENST00000464870 UniProtKB/TrEMBL
  ENST00000467283 UniProtKB/TrEMBL
  ENST00000476061 UniProtKB/TrEMBL
  ENST00000477554 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000477625 UniProtKB/TrEMBL
  ENST00000480836 UniProtKB/TrEMBL
  ENST00000486116 UniProtKB/TrEMBL
  ENST00000492451 UniProtKB/TrEMBL
  ENST00000495688 UniProtKB/Swiss-Prot
  ENST00000496197 UniProtKB/TrEMBL
  ENST00000629151 UniProtKB/TrEMBL
  ENST00000691036 ENTREZGENE
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000143851 GTEx
HGNC ID HGNC:9659 ENTREZGENE
Human Proteome Map PTPN7 Human Proteome Map
InterPro Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_KIM-con UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:5778 UniProtKB/Swiss-Prot
NCBI Gene 5778 ENTREZGENE
OMIM 176889 OMIM
PANTHER PTHR46198 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA34003 PharmGKB
PRINTS KIMPTPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024R9A7 ENTREZGENE, UniProtKB/TrEMBL
  A1MKQ8_HUMAN UniProtKB/TrEMBL
  B4DDG6_HUMAN UniProtKB/TrEMBL
  B4DZD9 ENTREZGENE, UniProtKB/TrEMBL
  C9IYI6_HUMAN UniProtKB/TrEMBL
  C9JAW7_HUMAN UniProtKB/TrEMBL
  C9JBA9_HUMAN UniProtKB/TrEMBL
  E7EUM0_HUMAN UniProtKB/TrEMBL
  E9PE54_HUMAN UniProtKB/TrEMBL
  F8WEY3_HUMAN UniProtKB/TrEMBL
  F8WF08_HUMAN UniProtKB/TrEMBL
  F8WF66_HUMAN UniProtKB/TrEMBL
  H7C4T8_HUMAN UniProtKB/TrEMBL
  H7C5I3_HUMAN UniProtKB/TrEMBL
  J3KR55_HUMAN UniProtKB/TrEMBL
  P35236 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B3KXE1 UniProtKB/Swiss-Prot
  Q53XK4 UniProtKB/Swiss-Prot
  Q5SXQ0 UniProtKB/Swiss-Prot
  Q5SXQ1 UniProtKB/Swiss-Prot
  Q9BV05 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 PTPN7  protein tyrosine phosphatase non-receptor type 7    protein tyrosine phosphatase, non-receptor type 7  Symbol and/or name change 5135510 APPROVED