GWAS1152384_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1152384_H (basophil percentage of leukocytes QTL GWAS1152384 (human)) Homo sapiens

Symbol: GWAS1152384_H
Name: basophil percentage of leukocytes QTL GWAS1152384 (human)
RGD ID: 597056310
Trait: basophil quantity   (VT:0002607)    
Measurement Type: blood basophil count to total leukocyte count ratio   (CMO:0000368)    
LOD Score: Not Available
P Value: 5.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381202,160,068 - 202,160,069RGD_MAPPER_PIPELINEGRCh38
GRCh371202,129,196 - 202,129,197RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1152384_HHumanblood basophil count to total leukocyte count ratio  IAGPrs73085637405850206 GWAS_CATALOGPMID:32888494

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1152384_HHumanbasophil quantity  IAGPrs73085637405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1152384_HHumanbasophil percentage of leukocytes  IAGPrs73085637405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605720PTPN7protein tyrosine phosphatase non-receptor type 71202147013202161588Human


Peak: (rs73085637)
Human AssemblyChrPosition (strand)Source
GRCh381202,160,068 - 202,160,069RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597056310GWAS1152384_Hbasophil percentage of leukocytes QTL GWAS1152384 (human)5e-10basophil quantity (VT:0002607)blood basophil count to total leukocyte count ratio (CMO:0000368)1202160068202160069Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1152384_H GCST90002380 Basophil percentage of white cells 408,112 British individuals C 0.129336 5E-10 9.302 rs73085637 0.023192514 basophil percentage of leukocytes (EFO:0007992)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90002380 GWAS Catalog

Note Type Note Reference