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Gene: CDC5L (cell division cycle 5 like) Sus scrofa

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Symbol:

CDC5L

Name:

cell division cycle 5 like

RGD ID:

14042809

Description:

ENCODES a protein that exhibits leucine zipper domain binding (ortholog); protein kinase binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN cellular response to fibroblast growth factor stimulus (ortholog); cellular response to interleukin-2 (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH CAKUT (ortholog); esophagus adenocarcinoma (ortholog); Lung Neoplasms (ortholog); FOUND IN nuclear speck (ortholog); perinuclear region of cytoplasm (ortholog); protein-DNA complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cell division cycle 5-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDC5L (cell division cycle 5 like)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cdc5l (cell division cycle 5-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cdc5l (cell division cycle 5-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdc5l (cell division cycle 5 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDC5L (cell division cycle 5 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDC5L (cell division cycle 5 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdc5l (cell division cycle 5 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDC5L (cell division cycle 5 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdc5l (cell division cycle 5 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	39,384,556 - 39,431,248 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	39,384,397 - 39,427,729 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	45,306,065 - 45,349,669 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CDC5L	Pig	esophagus adenocarcinoma	disease_progression	ISO	CDC5L (Homo sapiens)	9068941	protein:increased expression:esophageal mucosa (human)	RGD	PMID:15725809 and REF_RGD_ID:10047052
CDC5L	Pig	Lung Neoplasms		ISO	Cdc5l (Mus musculus)	9068941	mRNA:increased expression:lung (mouse)	RGD	PMID:14647414 and REF_RGD_ID:10047051
CDC5L	Pig	osteosarcoma		ISO	CDC5L (Homo sapiens)	9068941	DNA:amplification:cds (human)	RGD	PMID:18567798 and REF_RGD_ID:10047050

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CDC5L	Pig	CAKUT		ISO	CDC5L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital anomalies of kidney and urinary tract	ClinVar	PMID:27657687

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CDC5L	Pig	cell division	involved_in	IEA	UniProtKB-KW:KW-0132	150520179		UniProt	GO_REF:0000043
CDC5L	Pig	cellular response to fibroblast growth factor stimulus		ISO	Cdc5l (Rattus norvegicus)	9068941		RGD	PMID:11694351 and REF_RGD_ID:10047049
CDC5L	Pig	cellular response to interleukin-2		ISO	Cdc5l (Rattus norvegicus)	9068941		RGD	PMID:11694351 and REF_RGD_ID:10047049
CDC5L	Pig	cellular response to nerve growth factor stimulus		ISO	Cdc5l (Rattus norvegicus)	9068941		RGD	PMID:20629186 and REF_RGD_ID:10045890
CDC5L	Pig	cellular response to prolactin		ISO	Cdc5l (Rattus norvegicus)	9068941		RGD	PMID:9296381 and REF_RGD_ID:61637
CDC5L	Pig	cellular response to wortmannin		ISO	Cdc5l (Rattus norvegicus)	9068941		RGD	PMID:20629186 and REF_RGD_ID:10045890
CDC5L	Pig	DNA damage checkpoint signaling	involved_in	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	mRNA processing	involved_in	IEA	UniProtKB-KW:KW-0507	150520179		UniProt	GO_REF:0000043
CDC5L	Pig	mRNA splicing, via spliceosome	involved_in	IBA	PANTHER:PTN000067719 more ...	150520179		GO_Central	GO_REF:0000033
CDC5L	Pig	mRNA splicing, via spliceosome	involved_in	IEA	InterPro:IPR047242	150520179		InterPro	GO_REF:0000002
CDC5L	Pig	mRNA splicing, via spliceosome	involved_in	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	positive regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	regulation of transcription by RNA polymerase II	involved_in	IBA	PANTHER:PTN000836844 and UniProtKB:Q99459	150520179		GO_Central	GO_REF:0000033
CDC5L	Pig	RNA splicing	involved_in	IEA	UniProtKB-KW:KW-0508	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CDC5L	Pig	catalytic step 2 spliceosome	part_of	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	cytoplasm	part_of	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	DNA replication factor A complex	located_in	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	nuclear speck		ISO	Cdc5l (Rattus norvegicus)	9068941		RGD	PMID:11884640 and REF_RGD_ID:619664
CDC5L	Pig	nuclear speck	located_in	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	nucleoplasm	located_in	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	nucleus	located_in	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
CDC5L	Pig	perinuclear region of cytoplasm		ISO	Cdc5l (Rattus norvegicus)	9068941		RGD	PMID:11694351 and REF_RGD_ID:10047049
CDC5L	Pig	protein-DNA complex		ISO	Cdc5l (Rattus norvegicus)	9068941		RGD	PMID:11694351 and REF_RGD_ID:10047049
CDC5L	Pig	Prp19 complex	part_of	IBA	FB:FBgn0265574 more ...	150520179		GO_Central	GO_REF:0000033
CDC5L	Pig	Prp19 complex	part_of	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	Prp19 complex	part_of	IEA	InterPro:IPR047242	150520179		InterPro	GO_REF:0000002
CDC5L	Pig	spliceosomal complex	part_of	IBA	PANTHER:PTN000067719 more ...	150520179		GO_Central	GO_REF:0000033
CDC5L	Pig	spliceosomal complex	part_of	IEA	UniProtKB-KW:KW-0747	150520179		UniProt	GO_REF:0000043
CDC5L	Pig	spliceosomal complex	part_of	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	U2-type catalytic step 2 spliceosome	part_of	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CDC5L	Pig	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	PANTHER:PTN000836844 and UniProtKB:Q99459	150520179		GO_Central	GO_REF:0000033
CDC5L	Pig	identical protein binding	enables	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	leucine zipper domain binding		ISO	Dapk3 (Rattus norvegicus)	9068941		RGD	PMID:11884640 and REF_RGD_ID:619664
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q9UNY4	9068941	PMID:12927788	IntAct	PMID:12927788
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:P07910	9068941	PMID:39251607	IntAct	PMID:39251607
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q08379 and UniProtKB:Q0D2H9	9068941	PMID:25416956	IntAct	PMID:25416956
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q13535 and UniProtKB:Q9UMS4	9068941	PMID:19633697	IntAct	PMID:19633697
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:O75934 and UniProtKB:P07910	9068941	PMID:30021884	IntAct	PMID:30021884
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:P62136	9068941	PMID:22940584	IntAct	PMID:22940584
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:O60341 more ...	9068941	PMID:17043677 and PMID:31413325	IntAct	PMID:17043677 and PMID:31413325
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:O43660 more ...	9068941	PMID:20176811	UniProt	PMID:20176811
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q9UMS4	9068941	PMID:28514442	IntAct	PMID:28514442
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:O75934	9068941	PMID:22365833	IntAct	PMID:22365833
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:O43660 more ...	9068941	PMID:20467437	IntAct	PMID:20467437
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q8WYA6	9068941	PMID:18722174 and PMID:24269683	IntAct	PMID:18722174 and PMID:24269683
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:O95751 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:O43660 more ...	9068941	PMID:20176811	IntAct	PMID:20176811
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q13416	9068941	PMID:15232106	IntAct	PMID:15232106
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q15428	9068941	PMID:17332742	IntAct	PMID:17332742
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:P42858	9068941	PMID:32814053	IntAct	PMID:32814053
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:O43660 more ...	9068941	PMID:33961781	IntAct	PMID:33961781
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q15428 more ...	9068941	PMID:35271311	IntAct	PMID:35271311
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q9JMJ4	9068941	PMID:16352598	UniProt	PMID:16352598 and REF_RGD_ID:10047232
CDC5L	Pig	protein binding	enables	ISO	UniProtKB:Q9BQ65	9068941	PMID:23022480	UniProt	PMID:23022480
CDC5L	Pig	protein kinase binding		ISO	Dapk3 (Rattus norvegicus)	9068941		RGD	PMID:11884640 and REF_RGD_ID:619664
CDC5L	Pig	protein phosphatase 1 binding		ISO	Ppp1r8 (Rattus norvegicus)	9068941		RGD	PMID:10827081 and REF_RGD_ID:10045998
CDC5L	Pig	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IBA	PANTHER:PTN000836844 and UniProtKB:Q99459	150520179		GO_Central	GO_REF:0000033
CDC5L	Pig	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107
CDC5L	Pig	transcription corepressor binding		ISO	Ywhab (Rattus norvegicus)	9068941		RGD	PMID:20629186 and REF_RGD_ID:10045890
CDC5L	Pig	WD40-repeat domain binding	enables	IEA	UniProtKB:Q99459 and ensembl:ENSP00000360532	150520179		Ensembl	GO_REF:0000107

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CDC5L	Pig	spliceosome pathway		ISO	CDC5L (Homo sapiens)	9068941		RGD	PMID:23742842 and REF_RGD_ID:9686094

PMID:14681463	PMID:30032202

CDC5L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	39,384,556 - 39,431,248 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	39,384,397 - 39,427,729 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	45,306,065 - 45,349,669 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDC5L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	44,387,706 - 44,450,425 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	44,387,706 - 44,450,425 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	44,355,443 - 44,418,162 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	44,463,280 - 44,522,758 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	44,463,279 - 44,522,757	NCBI
Celera	6	45,908,480 - 45,967,835 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	44,077,869 - 44,140,670 (+)	NCBI		HuRef
CHM1_1	6	44,358,890 - 44,421,686 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	44,222,452 - 44,285,059 (+)	NCBI		T2T-CHM13v2.0

Cdc5l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	45,702,809 - 45,744,633 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	45,702,810 - 45,744,663 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	45,391,887 - 45,433,707 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	45,391,884 - 45,433,737 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	45,528,836 - 45,570,656 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	44,855,468 - 44,897,288 (-)	NCBI		MGSCv36	mm8
Celera	17	48,822,530 - 48,866,019 (-)	NCBI		Celera
Cytogenetic Map	17	B3	NCBI
cM Map	17	22.36	NCBI

Cdc5l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	23,062,397 - 23,100,901 (+)	NCBI		GRCr8
mRatBN7.2	9	15,564,949 - 15,603,453 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	15,564,767 - 15,603,450 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,151,506 - 24,189,633 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,214,190 - 29,252,317 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	27,514,951 - 27,553,079 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,949,764 - 17,988,514 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,949,764 - 17,988,509 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,838,171 - 16,876,921 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,165,631 - 11,204,135 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	11,162,952 - 11,201,455 (+)	NCBI
Celera	9	13,308,462 - 13,346,957 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

Cdc5l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,990,613 - 10,032,034 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,990,613 - 10,032,034 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDC5L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,891,113 - 58,955,556 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	54,761,126 - 54,821,533 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,983,840 - 44,043,029 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	45,265,845 - 45,326,392 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	45,265,845 - 45,326,383 (+)	Ensembl	panpan1.1		panPan2

CDC5L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,779,936 - 12,822,978 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,780,010 - 12,822,801 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,807,973 - 12,851,031 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	13,266,108 - 13,309,161 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	13,266,132 - 13,309,158 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,791,651 - 12,835,010 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,879,429 - 12,922,495 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,973,455 - 13,016,504 (+)	NCBI		UU_Cfam_GSD_1.0

Cdc5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	48,262,000 - 48,311,662 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	15,648,678 - 15,698,106 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	15,647,470 - 15,698,095 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC5L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	27,727,185 - 27,785,233 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	27,722,819 - 27,785,268 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	44,437,105 - 44,495,930 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdc5l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	15,477,193 - 15,517,636 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	15,477,188 - 15,517,656 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in CDC5L
916 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3


RefSeq Transcripts	XM_001929597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK238983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR956370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01109239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000001908 ⟹ ENSSSCP00000001861

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	39,384,556 - 39,431,248 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000097365 ⟹ ENSSSCP00000080432

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	39,387,243 - 39,431,248 (+)	Ensembl

RefSeq Acc Id:

XM_001929597 ⟹ XP_001929632

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	39,384,397 - 39,427,729 (+)	NCBI

Sequence:

show sequence

ATTTTGGGCCTGCGCCGGGCATAGGCCGCTTTGGCTAGAGCTGTTTGATGTTTTTCTGTCAGTCTTTCTAGAGCAGCGCTTTAACAGCAAGGCACTTATTTCCTCTCAGCCACTTGAGTTCTCGCGAG
ATTTGTTACCCTGTCCCCGCAACACCCCCTTGCGCCTGCGCAGATCTCTTCAAAGCAGAAGGTCGCGCTTAGAGGAAGTGGCGCCTTAGGGTCCCGTGGCCGCAGCGCCGTTACTACTTCTCTGAATC
TCCACTCGGCTGCTTGCCGAGACACTCCGCCGCCAAGATGCCTCGAATTATGATCAAGGGGGGTGTGTGGAGGAATACCGAGGATGAAATTTTGAAAGCAGCGGTAATGAAATATGGAAAAAACCAGT
GGTCTAGGATTGCCTCACTGCTGCATAGAAAATCAGCCAAGCAGTGCAAAGCCAGATGGTATGAGTGGTTGGATCCAAGCATTAAGAAAACAGAATGGTCCAGAGAAGAAGAGGAAAAACTGTTGCAC
TTGGCCAAGTTGATGCCAACTCAGTGGAGGACCATCGCTCCAATCATTGGAAGAACAGCCGCCCAGTGTTTGGAACACTATGAATTTCTTCTGGATAAAGCTGCCCAAAGAGACAATGAAGAGGAAAC
AACAGATGATCCACGAAAACTTAAACCTGGAGAAATAGATCCAAATCCAGAAACAAAACCAGCACGGCCTGATCCGATTGATATGGATGAGGATGAACTCGAGATGCTTTCTGAAGCTAGAGCCCGCC
TGGCTAATACTCAGGGAAAGAAAGCCAAGAGGAAAGCACGAGAGAAACAGTTGGAAGAGGCAAGGCGTCTTGCTGCCCTCCAGAAGAGAAGAGAACTTCGAGCAGCTGGCATAGAAATTCAGAAGAAA
AGAAAAAAGAAGAGGGGAGTTGATTATAATGCTGAAATCCCATTTGAAAAAAAGCCTGCTCTTGGTTTCTATGACACTTCTGAGGAAAACTACCAGGCTCTAGATGCTGATTTCAGAAAGTTAAGACA
ACAGGATCTTGATGGGGAGCTAAGATCTGAAAAAGAAGGAAGAGATAGAAAAAAAGACAAGCAGCATTTGAAAAGGAAAAAAGAATCTGATTTACCATCAGCTATTCTTCAAACTAGCGGTGTTTCTG
AATTTACTAAAAAGAGAAGCAAGCTAGTACTTCCTGCCCCTCAGATTTCAGATGCAGAACTCCAGGAAGTTGTAAAAGTGGGCCAAGCAAGCGAAATTGCACGTCAGACTGCCGAGGAATCTGGCATA
ACAAACTCTGCTTCCAGTACTCTCTTGTCTGAGTACAATGTCACCAACAATAGCATCGCTCTGAGAACACCACGAACACCAGCTTCCCAGGACAGAATTCTGCAGGAAGCCCAAAACCTCATGGCCCT
GACCAACGTGGACACCCCCTTGAAGGGCGGACTTAACACCCCCCTGCATGAGAGCGACTTCTCAGGTGTGACTCCCCAGCGGCAGGTAGTACAGACTCCAAACACAGTTCTCTCTACCCCGTTCAGAA
CTCCTTCTCATGGATCTGAAGGGCTGACTCCCCGAAGTGGGACAACTCCCAAACCAGTTATTAACTCCACCCCGGGTAGAACTCCTCTTCGAGACAAGTTAAACATTAATCCCGAGGATGGAATGGCA
GACTACAGTGACCCCTCTTATGTGAAGCAGATGGAAAGAGAATCTCGTGAACACCTTCGTTTAGGCTTGTTGGGCCTTCCTGCTCCTAAGAACGACTTTGAAATTGTTCTACCAGAAAATGCTGAGAA
GGAACTGGAAGACCGTGAAGTAGATGATACTTATATTGAAGATGCTGCTGATGTGGATGCACGGAAGCAGGCCATACGAGAGGCAGAGCGTGTAAAGGAAATGAAACGAATGCACAAAGCTGTCCAGA
AAGACCTGCCAAGACCATCAGAAGTCAATGAAACTATTCTAAGACCCTTAAATGTAGAACCACCTCTAACAGATCTACAGAAAAGTGAAGAACTGATCAAAAAAGAAATGATCACAATGCTTCATTAT
GACCTTCTACATCACCCTTACGAACCATCTGGAAATAAAAAAGGAAAACCTGTAGGATTCGGTACCAATAACGCAGAGCACATTGCCTATCTGGAGCATAACCCTTATGAAAAGTTCTCCAAAGAAGA
GCTGAAAAAGGCCCAGGACGTTCTGGTACAGGAGATGGAAGTGGTAAAACAAGGTATGAGCCATGGAGAACTCTCAAGTGAAGCTTATAACCAGGTGTGGGAAGAATGCTACAGTCAAGTTTTGTATC
TTCCTGGGCAGAGCCGCTACACACGGGCCAACCTAGCCAGCAAAAAGGACAGAATCGAGTCCCTGGAAAAGAGGCTTGAGATAAACAGGGGTCACATGACAACAGAAGCCAAGAGAGCTGCAAAGATG
GAAAAGAAGATGAAAATTTTGCTTGGGGGCTACCAGTCTCGTGCAATGGGGCTTATGAAACAGTTGAATGACTTATGGGACCAAATTGAGCAGGCTTACTTGGAGTTACGCACTTTTGAAGAACTCAA
GAAACATGAAGACTCTGCTATTCCCCGGAGGCTAGAGTGTCTAAAAGAAGATGTTCAGCGACAACAGGAAAGAGAAAAGGAACTTCAGCATAGATATGCTGATTTGCTGCTGGAGAAAGAGACTCTAA
AGGCTAAATTCTGAAGCATAGTTTGTATTCTGTCGCAAGATGAATTAACTGCTAGTGTTCACACCCTGGAAGGCCGAAACTGATGTTTATCTTCCTCGACAAATTTGCCCACAATCGGTGGTTTTTCA
GTTATTTTAAATGATATCCATCTCACACATTTATGTATAAAGACTTAACCCCACAGGACATTTTAGGGTTTAAATTATTAAGACGATCATTCTTTCAGCAGTGTCATCTTTGCAAATTTTTTTTAGTT
TTGGCCTTTAATTTTAAAAGCCTGATTTTAAAGTGCTGCCTGTGCGTAAACTCTTGAATAAAAACAAAATATAAAAAATTGA

hide sequence


Protein RefSeqs	XP_001929632	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000001861
	ENSSSCP00000001861.3
	ENSSSCP00000080432.1
	ENSSSCP00015014515.1
	ENSSSCP00025025860.1
	ENSSSCP00030042993.1
	ENSSSCP00035046513.1
	ENSSSCP00040038809.1
	ENSSSCP00045024122.1
	ENSSSCP00045024224.1
	ENSSSCP00050002285.1
	ENSSSCP00055025142.1
	ENSSSCP00055025215.1
	ENSSSCP00060011921.1
	ENSSSCP00065040804.1
	ENSSSCP00070036366.1

RefSeq Acc Id:

XP_001929632 ⟸ XM_001929597

- UniProtKB:

F1RQS5 (UniProtKB/TrEMBL), A0A4X1V455 (UniProtKB/TrEMBL), A0A8D0KGE9 (UniProtKB/TrEMBL), A0A8W4FLS6 (UniProtKB/TrEMBL), A0A8D0USH3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDPRKLKPGEI
DPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKKKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKE
GRDRKKDKQHLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEIARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPASQDRILQEAQNLMALTNVDTPLKGGLN
TPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSHGSEGLTPRSGTTPKPVINSTPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLLGLPAPKNDFEIVLPENAEKELEDREVDDTYI
EDAADVDARKQAIREAERVKEMKRMHKAVQKDLPRPSEVNETILRPLNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKPVGFGTNNAEHIAYLEHNPYEKFSKEELKKAQDVLVQEM
EVVKQGMSHGELSSEAYNQVWEECYSQVLYLPGQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAYLELRTFEELKKHEDSAIPRRLE
CLKEDVQRQQEREKELQHRYADLLLEKETLKAKF

hide sequence

Ensembl Acc Id:

ENSSSCP00000001861 ⟸ ENSSSCT00000001908

Ensembl Acc Id:

ENSSSCP00000080432 ⟸ ENSSSCT00000097365

Protein Domains

HTH myb-type Myb-like

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000001708	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015027281	UniProtKB/TrEMBL
	ENSSSCG00025044697	UniProtKB/TrEMBL
	ENSSSCG00030066772	UniProtKB/TrEMBL
	ENSSSCG00035078764	UniProtKB/TrEMBL
	ENSSSCG00040064466	UniProtKB/TrEMBL
	ENSSSCG00045020282	UniProtKB/TrEMBL
	ENSSSCG00050003999	UniProtKB/TrEMBL
	ENSSSCG00055015957	UniProtKB/TrEMBL
	ENSSSCG00060020538	UniProtKB/TrEMBL
	ENSSSCG00065067867	UniProtKB/TrEMBL
	ENSSSCG00070021750	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000001908	ENTREZGENE
	ENSSSCT00000001908.4	UniProtKB/TrEMBL
	ENSSSCT00000097365.1	UniProtKB/TrEMBL
	ENSSSCT00015036453.1	UniProtKB/TrEMBL
	ENSSSCT00025060925.1	UniProtKB/TrEMBL
	ENSSSCT00030093390.1	UniProtKB/TrEMBL
	ENSSSCT00035107597.1	UniProtKB/TrEMBL
	ENSSSCT00040088275.1	UniProtKB/TrEMBL
	ENSSSCT00045034780.1	UniProtKB/TrEMBL
	ENSSSCT00045034913.1	UniProtKB/TrEMBL
	ENSSSCT00050005474.1	UniProtKB/TrEMBL
	ENSSSCT00055031588.1	UniProtKB/TrEMBL
	ENSSSCT00055031682.1	UniProtKB/TrEMBL
	ENSSSCT00060027849.1	UniProtKB/TrEMBL
	ENSSSCT00065093230.1	UniProtKB/TrEMBL
	ENSSSCT00070043218.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	CDC5L/Cef1	UniProtKB/TrEMBL
	Cdc5p/Cef1	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Myb_dom	UniProtKB/TrEMBL
	SANT/Myb	UniProtKB/TrEMBL
	SANT_CDC5L_II	UniProtKB/TrEMBL
KEGG Report	ssc:100153900	UniProtKB/TrEMBL
NCBI Gene	CDC5L	ENTREZGENE
PANTHER	CELL DIVISION CYCLE 5-LIKE PROTEIN	UniProtKB/TrEMBL
	CELL DIVISION CYCLE 5-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Myb_Cef	UniProtKB/TrEMBL
	Myb_DNA-bind_6	UniProtKB/TrEMBL
PROSITE	HTH_MYB	UniProtKB/TrEMBL
	MYB_LIKE	UniProtKB/TrEMBL
SMART	SANT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A4X1V455	ENTREZGENE
	A0A8D0KGE9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0USH3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FLS6	ENTREZGENE, UniProtKB/TrEMBL
	F1RQS5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A4X1V455	UniProtKB/TrEMBL
VGNC ID	VGNC:86463	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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