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Gene: CDC5L (cell division cycle 5 like) Chlorocebus sabaeus

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Symbol:

CDC5L

Name:

cell division cycle 5 like

RGD ID:

18671217

Description:

ENCODES a protein that exhibits leucine zipper domain binding (ortholog); protein kinase binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN cellular response to fibroblast growth factor stimulus (ortholog); cellular response to interleukin-2 (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH CAKUT (ortholog); esophagus adenocarcinoma (ortholog); Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); DNA replication factor A complex (ortholog); nuclear speck (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cell division cycle 5-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	27,727,185 - 27,785,233 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	27,722,819 - 27,785,268 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	44,437,105 - 44,495,930 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CAKUT (ISO)

esophagus adenocarcinoma (ISO)

Lung Neoplasms (ISO)

osteosarcoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to fibroblast growth factor stimulus (ISO)

cellular response to interleukin-2 (ISO)

cellular response to nerve growth factor stimulus (ISO)

cellular response to prolactin (ISO)

cellular response to wortmannin (ISO)

DNA damage checkpoint signaling (IEA)

mRNA processing (IEA)

mRNA splicing, via spliceosome (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

regulation of transcription by RNA polymerase II (IEA)

RNA splicing (IEA)

Cellular Component

catalytic step 2 spliceosome (IEA)

cytoplasm (IEA,ISO)

DNA replication factor A complex (IEA,ISO)

nuclear speck (IEA,ISO)

nucleoplasm (IEA)

nucleus (IEA)

perinuclear region of cytoplasm (ISO)

protein-DNA complex (ISO)

Prp19 complex (IEA)

spliceosomal complex (IEA)

U2-type catalytic step 2 spliceosome (IEA)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

identical protein binding (IEA)

leucine zipper domain binding (ISO)

protein binding (ISO)

protein kinase binding (ISO)

protein phosphatase 1 binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

transcription corepressor binding (ISO)

WD40-repeat domain binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CDC5L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	27,727,185 - 27,785,233 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	27,722,819 - 27,785,268 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	44,437,105 - 44,495,930 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CDC5L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	44,387,706 - 44,450,425 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	44,387,706 - 44,450,425 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	44,355,443 - 44,418,162 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	44,463,280 - 44,522,758 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	44,463,279 - 44,522,757	NCBI
Celera	6	45,908,480 - 45,967,835 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	44,077,869 - 44,140,670 (+)	NCBI		HuRef
CHM1_1	6	44,358,890 - 44,421,686 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	44,222,452 - 44,285,059 (+)	NCBI		T2T-CHM13v2.0

Cdc5l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	45,702,809 - 45,744,633 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	45,702,810 - 45,744,663 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	45,391,887 - 45,433,707 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	45,391,884 - 45,433,737 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	45,528,836 - 45,570,656 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	44,855,468 - 44,897,288 (-)	NCBI		MGSCv36	mm8
Celera	17	48,822,530 - 48,866,019 (-)	NCBI		Celera
Cytogenetic Map	17	B3	NCBI
cM Map	17	22.36	NCBI

Cdc5l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	23,062,397 - 23,100,901 (+)	NCBI		GRCr8
mRatBN7.2	9	15,564,949 - 15,603,453 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	15,564,767 - 15,603,450 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,151,506 - 24,189,633 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,214,190 - 29,252,317 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	27,514,951 - 27,553,079 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,949,764 - 17,988,514 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,949,764 - 17,988,509 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,838,171 - 16,876,921 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,165,631 - 11,204,135 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	11,162,952 - 11,201,455 (+)	NCBI
Celera	9	13,308,462 - 13,346,957 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

Cdc5l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,990,613 - 10,032,034 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,990,613 - 10,032,034 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDC5L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,891,113 - 58,955,556 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	54,761,126 - 54,821,533 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,983,840 - 44,043,029 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	45,265,845 - 45,326,392 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	45,265,845 - 45,326,383 (+)	Ensembl	panpan1.1		panPan2

CDC5L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,779,936 - 12,822,978 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,780,010 - 12,822,801 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,807,973 - 12,851,031 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	13,266,108 - 13,309,161 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	13,266,132 - 13,309,158 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,791,651 - 12,835,010 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,879,429 - 12,922,495 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,973,455 - 13,016,504 (+)	NCBI		UU_Cfam_GSD_1.0

Cdc5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	48,262,000 - 48,311,662 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	15,648,678 - 15,698,106 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	15,647,470 - 15,698,095 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC5L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	39,384,556 - 39,431,248 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	39,384,397 - 39,427,729 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	45,306,065 - 45,349,669 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cdc5l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	15,477,193 - 15,517,636 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	15,477,188 - 15,517,656 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CDC5L
1090 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007972376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000010553 ⟹ ENSCSAP00000008644

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	17	27,722,819 - 27,785,268 (-)	Ensembl

RefSeq Acc Id:

XM_007972376 ⟹ XP_007970567

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	17	27,727,185 - 27,785,233 (-)	NCBI
Vero_WHO_p1.0	NW_023666044	44,437,105 - 44,495,930 (+)	NCBI

Sequence:

show sequence

CAGAGTGGTTTGATGGTTTTTTGTCAGTCTTCCTACCGCTGAGCTTCCACAAGACACTTTTTCC
CTTTCAGCCACCCCAGATCTCGCGAGACTTGCTTACTGCTTTCCTCCTCCCACCTTGCGCCTGC
GCAGGTCTTCAAAGCAGAAGGTCGCGCTTGGAGCAAGTGGCGGCTTTGAGTCCCGTGGCCCAAG
CGCCGTTACTACTTCTCGGAAGCTCCTGTCGGCTGCTTGCCGAGATACCCTGCCGCCAAGATGC
CTCGAATTATGATCAAGGGGGGCGTGTGGAGGAACACCGAGGATGAAATTCTGAAAGCAGCGGT
AATGAAATATGGGAAAAACCAGTGGTCTAGGATTGCCTCATTGCTGCATAGAAAATCAGCAAAG
CAGTGCAAAGCCAGATGGTATGAATGGCTGGATCCAAGCATTAAGAAGACAGAATGGTCCAGAG
AAGAAGAGGAAAAACTCTTGCACTTGGCCAAGTTGATGCCAACTCAGTGGAGGACCATTGCTCC
AATCATTGGAAGAACAGCGGCCCAGTGCTTAGAACACTATGAATTTCTTCTGGATAAAGCTGCC
CAAAGAGACAATGAGGAGGAAACAACAGATGATCCACGAAAACTTAAACCTGGAGAAATAGATC
CAAATCCAGAAACAAAACCAGCGCGGCCTGATCCAATAGATATGGATGAGGATGAACTTGAGAT
GCTTTCAGAAGCCAGAGCCCGCTTGGCTAATACTCAGGGAAAGAAGGCCAAGAGGAAAGCAAGA
GAAAAGCAATTGGAAGAAGCAAGACGTCTTGCTGCCCTCCAAAAAAGAAGAGAACTTCGAGCAG
CTGGCATAGAAATTCAGAAGAAAAGAAAAAGGAAGAGAGGAGTTGATTATAATGCTGAAATCCC
ATTTGAAAAAAAGCCTGCCCTTGGTTTTTATGATACTTCCGAGGAAAACTACCAAGCTCTTGAC
GCAGATTTCAGGAAATTAAGACAACAGGATCTTGATGGGGAGCTAAGATCTGAAAAAGAAGGAA
GAGATAGAAAAAAAGACAAACAGCATTTGAAAAGGAAAAAAGAATCTGATTTACCATCAGCTAT
TCTTCAAACTAGTGGTGTTTCTGAATTTACTAAAAAGAGAAGCAAACTAGTACTTCCTGCCCCT
CAGATTTCAGATGCAGAACTCCAGGAAGTTGTAAAAGTAGGCCAAGCGAGTGAAATTGCACGTC
AAACTGCCGAGGAATCTGGCATAACAAACTCTGCTTCCAGTACACTTTTGTCTGAGTACAATGT
CACCAACAACAGCATTGCTCTTAGAACACCACGAACACCAGCTTCCCAGGACAGAATTCTGCAG
GAAGCCCAGAACCTCATGGCCCTCACCAATGTGGACACCCCATTAAAAGGTGGACTTAATACCC
CGTTGCATGAGAGTGACTTCTCAGGTGTAACTCCACAGCGGCAGGTTGTACAGACTCCAAACAC
AGTTCTCTCTACTCCATTCAGGACTCCTTCTAATGGAGCTGAAGGGCTGACTCCCCGGAGTGGA
ACAACTCCCAAACCGGTTATTAACTCTACCCCGGGTAGAACTCCTCTTCGAGACAAGTTAAACA
TTAATCCTGAGGATGGAATGGCAGACTATAGTGATCCCTCTTATGTGAAGCAGATGGAAAGAGA
ATCTCGAGAACATCTCCGTTTAGGGTTGTTGGGCCTTCCTGCCCCTAAGAATGATTTTGAAATT
GTTCTACCAGAAAATGCCGAGAAGGAGCTGGAAGAACGTGAAGTAGATGATACTTACATTGAAG
ATGCTGCCGATGTGGATGCTCGAAAGCAGGCCATACGAGATGCAGAGCGTGTAAAGGAAATGAA
ACGAATGCATAAAGCTGTCCAGAAAGATCTGCCAAGACCATCAGAAGTAAATGAAACTATTCTA
AGACCCTTAAATGTAGAACCGCCTTTAACAGATTTACAGAAAAGTGAAGAACTAATCAAAAAAG
AAATGATCACAATGCTTCATTATGACCTCCTACATCACCCTTATGAACCATCTGGAAATAAAAA
AGGCAAAACTGTAGGGTTTGGTACCAATAATTCAGAGCACATTACCTATCTGGAACATAATCCT
TATGAGAAGTTCTCCAAAGAAGAGCTGAAAAAGGCCCAGGATGTTTTGGTGCAGGAGATGGAAG
TGGTTAAACAAGGAATGAGCCATGGAGAACTCTCAAGTGAAGCCTATAACCAGGTGTGGGAAGA
ATGCTACAGTCAAGTTTTATATCTTCCTGGGCAGAGCCGCTACACACGGGCCAATCTGGCTAGT
AAAAAGGACAGAATTGAATCACTTGAAAAGAGGCTCGAGATAAACAGGGGTCACATGACGACAG
AAGCCAAGAGAGCTGCAAAGATGGAAAAGAAGATGAAAATTTTGCTTGGGGGTTACCAGTCTCG
TGCTATGGGGCTCATGAAACAGTTGAATGACTTATGGGACCAAATTGAACAGGCTCACTTGGAG
TTACGCACTTTTGAAGAACTCAAGAAACATGAAGATTCTGCTATTCCCCGGAGGCTAGAGTGTC
TAAAAGAAGATGTTCAGCGACAACAAGAAAGAGAAAAGGAACTTCAACATAGATATGCTGATTT
GCTGCTGGAGAAAGAGACTTTAAAGTCAAAATTCTGAAGTACAGTTTATATTCTGTCACAGGAT
TAATTGCCAGTTTTCATACTCTAGAAGGCTGAAACTGATGTTTATCTTCATTGACAGATTTACC
CACCATCTTTGGTTTTTCGGTTGTTTATTTTAAATGATACCGATCTTACACATTCTGTGTATAA
AGACCTTAACTCCACAGGACGGACATTTTAGAGTTTAAATTATTAAGGCTGTCATTCTTTTAGC
AATGTCATATTTGCAAACTTTTTTAGTTTTGGCCTTTAATTTAAAAAGCCTAATTTTAAAGTGC
TGCCTGTGAGTAACTCTTGAATAAAAACAAAATATAAAAAATTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007970567	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000008644
	ENSCSAP00000008644.1

RefSeq Acc Id:	XP_007970567 ⟸ XM_007972376
- UniProtKB:	A0A0D9RJ55 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000008644 ⟸ ENSCSAT00000010553

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000012464	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000010553.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	CDC5L/Cef1	UniProtKB/TrEMBL
	Cdc5p/Cef1	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Myb_dom	UniProtKB/TrEMBL
	SANT/Myb	UniProtKB/TrEMBL
	SANT_CDC5L_II	UniProtKB/TrEMBL
KEGG Report	csab:103221429	UniProtKB/TrEMBL
NCBI Gene	CDC5L	ENTREZGENE
PANTHER	CELL DIVISION CYCLE 5-LIKE PROTEIN	UniProtKB/TrEMBL
	CELL DIVISION CYCLE 5-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Myb_Cef	UniProtKB/TrEMBL
	Myb_DNA-bind_6	UniProtKB/TrEMBL
PROSITE	HTH_MYB	UniProtKB/TrEMBL
	MYB_LIKE	UniProtKB/TrEMBL
SMART	SANT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A0D9RJ55	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations