C1QB (complement C1q B chain) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: C1QB (complement C1q B chain) Homo sapiens
Analyze
Symbol: C1QB
Name: complement C1q B chain
RGD ID: 1346671
HGNC Page HGNC:1242
Description: Predicted to enable identical protein binding activity. Involved in complement activation, classical pathway. Located in extracellular region. Part of complement component C1q complex. Biomarker of Alzheimer's disease; ocular hypertension; and severe acute respiratory syndrome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C1QD2; complement C1q chain B; complement C1q subcomponent subunit B; complement component 1, q subcomponent, B chain; complement component 1, q subcomponent, beta polypeptide; complement component C1q, B chain; complement subcomponent C1q chain B
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38122,653,236 - 22,661,637 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl122,652,762 - 22,661,637 (+)EnsemblGRCh38hg38GRCh38
GRCh37122,979,729 - 22,988,130 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,852,269 - 22,860,616 (+)NCBINCBI36Build 36hg18NCBI36
Build 34122,731,192 - 22,733,433NCBI
Celera121,304,397 - 21,312,691 (+)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,224,021 - 21,232,298 (+)NCBIHuRef
CHM1_1123,092,196 - 23,100,535 (+)NCBICHM1_1
T2T-CHM13v2.0122,478,246 - 22,486,577 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C1QBHumanAlzheimer's disease  IEP 1599518mRNA:increased expression:microglial cellRGD 
C1QBHumanCOVID-19  HEP 28912744mRNA:increased expression:peripheral blood mononuclear cell (human)RGD 
C1QBHumanocular hypertension  IEP 1599509mRNA:increased expression:retinaRGD 
C1QBHumanRetrograde Degeneration  ISOC1qb (Rattus norvegicus)1599508mRNA:increased expressionRGD 
C1QBHumansevere acute respiratory syndrome disease_progressionIEP 5490168mRNA:increased expression:lung (human)RGD 
C1QBHumanSpinal Cord Injuries  ISOC1qb (Rattus norvegicus)1599510mRNA:increased expressionRGD 
1 to 17 of 17 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C1QBHuman3-hydroxy-3-methylglutaryl-CoA lyase deficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deficiency of hydroxymethylglutaryl-CoA lyaseClinVarPMID:28492532
C1QBHumanC1q Deficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: C1Q deficiencyClinVarPMID:17513176 and PMID:21654842
C1QBHumanC1q Deficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: C1Q deficiencyClinVarPMID:25741868
C1QBHumanC1q Deficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: C1Q deficiencyClinVarPMID:25741868 and PMID:28492532
C1QBHumanC1q Deficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: C1Q deficiencyClinVarPMID:28492532
C1QBHumanC1q Deficiency 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: C1Q deficiency 2ClinVarPMID:24160257
C1QBHumanC1q Deficiency 2  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: C1Q deficiency 2ClinVarPMID:25741868
C1QBHumanC1q Deficiency 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: C1Q deficiency 2ClinVarPMID:25741868 and PMID:2894352
C1QBHumanC1q Deficiency 2  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
C1QBHumanC1q Deficiency 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: C1QB-related conditionClinVarPMID:28492532
C1QBHumancongenital disorder of glycosylation Ir  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital disorder of glycosylation type IrClinVarPMID:28492532
C1QBHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
C1QBHumangenetic disease  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
C1QBHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
C1QBHumangenetic disease  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
C1QBHumanhyperprolinemia type 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hyperprolinemia type 2ClinVarPMID:28492532
C1QBHumanParkinson's disease 6  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive early-onset Parkinson disease 6ClinVarPMID:28492532
1 to 17 of 17 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C1QBHumanDrug Hypersensitivity Syndrome  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:34142820
C1QBHumanExperimental Liver Cirrhosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
C1QBHumanIgA glomerulonephritis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25133636
C1QBHumanliver cirrhosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:26396155
C1QBHumanMyocardial Ischemia  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16214533
C1QBHumanovarian cyst  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:21239663
C1QBHumanprimary immunodeficiency disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:2894352
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C1QBHumanC1q Deficiency 2  IAGP 7240710 OMIM 

1 to 20 of 169 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C1QBHuman(1->4)-beta-D-glucan multiple interactionsISOC1qb (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of C1QB mRNACTDPMID:36331819
C1QBHuman(S)-colchicine increases expressionISOC1qb (Rattus norvegicus)6480464Colchicine results in increased expression of C1QB mRNACTDPMID:7870303
C1QBHuman1,1-dichloroethene increases expressionISOC1qb (Mus musculus)6480464vinylidene chloride results in increased expression of C1QB mRNACTDPMID:26682919
C1QBHuman1,2-dimethylhydrazine increases expressionISOC1qb (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of C1QB mRNACTDPMID:22206623
C1QBHuman1,2-dimethylhydrazine multiple interactionsISOC1qb (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of C1QB mRNA]CTDPMID:22206623
C1QBHuman1,3,5-trinitro-1,3,5-triazinane increases expressionISOC1qb (Rattus norvegicus)6480464cyclonite results in increased expression of C1QB mRNACTDPMID:25559034
C1QBHuman1,3-dinitrobenzene increases expressionISOC1qb (Rattus norvegicus)64804643-dinitrobenzene results in increased expression of C1QB mRNACTDPMID:21983209
C1QBHuman1-naphthyl isothiocyanate increases expressionISOC1qb (Rattus norvegicus)64804641-Naphthylisothiocyanate results in increased expression of C1QB mRNACTDPMID:25380136
C1QBHuman1-naphthyl isothiocyanate multiple interactionsEXP 6480464[1-Naphthylisothiocyanate co-treated with Cholic Acids] affects the expression of C1QB mRNACTDPMID:27344345
C1QBHuman17alpha-ethynylestradiol increases expressionISOC1qb (Mus musculus)6480464Ethinyl Estradiol results in increased expression of C1QB mRNACTDPMID:12072388
C1QBHuman17alpha-ethynylestradiol increases expressionISOC1qb (Rattus norvegicus)6480464Ethinyl Estradiol results in increased expression of C1QB mRNACTDPMID:15834898
C1QBHuman17alpha-ethynylestradiol multiple interactionsISOC1qb (Mus musculus)6480464[Ethinyl Estradiol co-treated with IL1B protein] results in increased expression of C1QB mRNA and [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of C1QB mRNACTDPMID:12072388 and PMID:17942748
C1QBHuman17beta-estradiol affects expressionISOC1qb (Mus musculus)6480464Estradiol affects the expression of C1QB mRNACTDPMID:15598610
C1QBHuman17beta-estradiol decreases expressionISOC1qb (Mus musculus)6480464Estradiol results in decreased expression of C1QB mRNACTDPMID:39298647
C1QBHuman17beta-estradiol multiple interactionsISOC1qb (Rattus norvegicus)6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of C1QB mRNACTDPMID:32741896
C1QBHuman17beta-estradiol increases expressionISOC1qb (Mus musculus)6480464Estradiol results in increased expression of C1QB mRNACTDPMID:19484750
C1QBHuman17beta-estradiol 3-benzoate multiple interactionsISOC1qb (Rattus norvegicus)6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of C1QB mRNACTDPMID:32741896
C1QBHuman2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOC1qb (Rattus norvegicus)64804642 more ...CTDPMID:31826744
C1QBHuman2,3',4,4',5-Pentachlorobiphenyl increases expressionISOC1qb (Mus musculus)64804642 more ...CTDPMID:31388691
C1QBHuman2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOC1qb (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of C1QB mRNACTDPMID:17942748

1 to 20 of 169 rows

Biological Process
1 to 10 of 10 rows

  
1 to 10 of 10 rows

Cellular Component
1 to 20 of 20 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C1QBHumanblood microparticle located_inHDA 150520179 PMID:22516433UniProtPMID:22516433
C1QBHumancollagen trimer part_ofIEAUniProtKB-KW:KW-0176150520179 UniProtGO_REF:0000043
C1QBHumancollagen-containing extracellular matrix located_inHDA 150520179 PMID:25037231 and PMID:28675934BHF-UCLPMID:25037231 and PMID:28675934
C1QBHumancomplement component C1 complex  ISOC1qb (Rattus norvegicus)9068941 RGDPMID:7594503 and REF_RGD_ID:69784
C1QBHumancomplement component C1 complex part_ofTAS 150520179 PMID:1706597PINCPMID:1706597
C1QBHumancomplement component C1 complex part_ofNAS 150520179 PMID:28104818ComplexPortalPMID:28104818
C1QBHumancomplement component C1q complex part_ofIPI 150520179 PMID:29449492ComplexPortalPMID:29449492
C1QBHumanextracellular region located_inIDA 150520179 PMID:18250442ComplexPortalPMID:18250442
C1QBHumanextracellular region located_inNAS 150520179 PMID:28104818ComplexPortalPMID:28104818
C1QBHumanextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
C1QBHumanextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
C1QBHumanextracellular region located_inTAS 150520179 ReactomeReactome:R-HSA-166753 more ...
C1QBHumanextrinsic component of postsynaptic membrane is_active_inIEAUniProtKB:P14106 and ensembl:ENSMUSP00000040246150520179 EnsemblGO_REF:0000107
C1QBHumanextrinsic component of presynaptic membrane is_active_inIEAUniProtKB:P14106 and ensembl:ENSMUSP00000040246150520179 EnsemblGO_REF:0000107
C1QBHumanglutamatergic synapse is_active_inIEAUniProtKB:P14106 and ensembl:ENSMUSP00000040246150520179 EnsemblGO_REF:0000107
C1QBHumanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
C1QBHumanpostsynapse located_inISSUniProtKB:P14106150520179 ARUK-UCLGO_REF:0000024
C1QBHumanpostsynapse located_inIEAUniProtKB:P14106 and ensembl:ENSMUSP00000040246150520179 EnsemblGO_REF:0000107
C1QBHumansynapse located_inISSUniProtKB:P14106 and UniProtKB:P31721150520179 ARUK-UCLGO_REF:0000024
C1QBHumansynapse located_inIEAUniProtKB:P14106 and ensembl:ENSMUSP00000040246150520179 EnsemblGO_REF:0000107
1 to 20 of 20 rows

Molecular Function

  

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C1QBHumanChagas disease pathway  IEA 6907045 KEGGhsa:05142
C1QBHumancoagulation cascade pathway   IEA 6907045 KEGGhsa:04610
C1QBHumancomplement system pathway  IEA 6907045 KEGGhsa:04610
C1QBHumanprion disease pathway  IEA 6907045 KEGGhsa:05020
C1QBHumanStaphylococcus aureus infection pathway  IEA 6907045 KEGGhsa:05150
C1QBHumansystemic lupus erythematosus pathway  IEA 6907045 KEGGhsa:05322
1 to 20 of 25 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C1QBHumanAnemia  IAGP 8699517 HPOMIM:620321
C1QBHumanAnti-Sm antibody positivity  IAGP 8699517 HPOMIM:620321
C1QBHumanAntinuclear antibody positivity  IAGP 8699517 HPOMIM:620321
C1QBHumanArthralgia  IAGP 8699517 HPOMIM:620321
C1QBHumanArthritis  IAGP 8699517 HPOMIM:620321
C1QBHumanAtelectasis  IAGP 8699517 HPOMIM:620321
C1QBHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:620321
C1QBHumanBronchiectasis  IAGP 8699517 HPOMIM:620321
C1QBHumanChilblains  IAGP 8699517 HPOMIM:620321
C1QBHumanChildhood onset  IAGP 8699517 HPOMIM:620321
C1QBHumanDecreased circulating C1q concentration  IAGP 8699517 HPOMIM:620321
C1QBHumanDiscoid lupus rash  IAGP 8699517 HPOMIM:620321
C1QBHumanElevated circulating C-reactive protein concentration  IAGP 8699517 HPOMIM:620321
C1QBHumanElevated erythrocyte sedimentation rate  IAGP 8699517 HPOMIM:620321
C1QBHumanExtractable nuclear antigen positivity  IAGP 8699517 HPOMIM:620321
C1QBHumanFacial erythema  IAGP 8699517 HPOMIM:620321
C1QBHumanMalar rash  IAGP 8699517 HPOMIM:620321
C1QBHumanOral ulcer  IAGP 8699517 HPOMIM:620321
C1QBHumanPersistent fever  IAGP 8699517 HPOMIM:620321
C1QBHumanRecurrent lower respiratory tract infections  IAGP 8699517 HPOMIM:620321
1 to 20 of 25 rows

1 to 12 of 12 rows
#
Reference Title
Reference Citation
1. Expression of two temporally distinct microglia-related gene clusters after spinal cord injury. Byrnes KR, etal., Glia. 2006 Mar;53(4):420-33.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Complement mRNA in the mammalian brain: responses to Alzheimer's disease and experimental brain lesioning. Johnson SA, etal., Neurobiol Aging. 1992 Nov-Dec;13(6):641-8.
4. Elucidating the molecular physiopathology of acute respiratory distress syndrome in severe acute respiratory syndrome patients. Kong SL, etal., Virus Res. 2009 Nov;145(2):260-9. Epub 2009 Jul 25.
5. Retinal synthesis and deposition of complement components induced by ocular hypertension. Kuehn MH, etal., Exp Eye Res. 2006 Sep;83(3):620-8. Epub 2006 May 4.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
11. Genetically determined susceptibility to neurodegeneration is associated with expression of inflammatory genes. Swanberg M, etal., Neurobiol Dis. 2006 Oct;24(1):67-88. Epub 2006 Aug 23.
12. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
1 to 12 of 12 rows
PMID:7240   PMID:486087   PMID:708376   PMID:814163   PMID:1249422   PMID:1370572   PMID:1537612   PMID:1706597   PMID:1744579   PMID:1875953   PMID:2894352   PMID:3000358  
PMID:3180845   PMID:6208566   PMID:6981411   PMID:7507842   PMID:7642209   PMID:7739575   PMID:7939135   PMID:8245486   PMID:8252810   PMID:9184145   PMID:9443108   PMID:9444979  
PMID:9777412   PMID:9780209   PMID:10471215   PMID:10504397   PMID:10882776   PMID:11318594   PMID:11527969   PMID:12396016   PMID:12477932   PMID:12645945   PMID:12847249   PMID:12960167  
PMID:15034050   PMID:15489334   PMID:15709773   PMID:16289162   PMID:16566583   PMID:16710414   PMID:17513176   PMID:18174230   PMID:18250442   PMID:18505047   PMID:19344414   PMID:19423540  
PMID:19493541   PMID:20139276   PMID:20237496   PMID:20379614   PMID:20406964   PMID:20438785   PMID:20528885   PMID:21054788   PMID:21698244   PMID:21862594   PMID:21951915   PMID:21988832  
PMID:22516433   PMID:22740328   PMID:23376485   PMID:23607884   PMID:23650384   PMID:23720782   PMID:23750785   PMID:24457600   PMID:24739385   PMID:25037231   PMID:25178676   PMID:25817358  
PMID:26175731   PMID:26186194   PMID:26410546   PMID:28005267   PMID:28018340   PMID:28104818   PMID:28325905   PMID:28514442   PMID:28675934   PMID:29331040   PMID:29449492   PMID:29795138  
PMID:30183357   PMID:31343991   PMID:32296183   PMID:32807901   PMID:33131194   PMID:33182045   PMID:33961781   PMID:34099652   PMID:34320915   PMID:34932275   PMID:35944360   PMID:36443341  
PMID:36574265   PMID:37250717   PMID:38113892  



C1QB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38122,653,236 - 22,661,637 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl122,652,762 - 22,661,637 (+)EnsemblGRCh38hg38GRCh38
GRCh37122,979,729 - 22,988,130 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,852,269 - 22,860,616 (+)NCBINCBI36Build 36hg18NCBI36
Build 34122,731,192 - 22,733,433NCBI
Celera121,304,397 - 21,312,691 (+)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,224,021 - 21,232,298 (+)NCBIHuRef
CHM1_1123,092,196 - 23,100,535 (+)NCBICHM1_1
T2T-CHM13v2.0122,478,246 - 22,486,577 (+)NCBIT2T-CHM13v2.0
C1qb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,607,437 - 136,613,511 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,607,440 - 136,613,498 (-)EnsemblGRCm39 Ensembl
GRCm384136,880,126 - 136,886,200 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,880,129 - 136,886,187 (-)EnsemblGRCm38mm10GRCm38
MGSCv374136,436,060 - 136,442,092 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364136,152,221 - 136,158,253 (-)NCBIMGSCv36mm8
Celera4135,087,605 - 135,093,669 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map469.05NCBI
C1qb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85154,402,276 - 154,407,827 (-)NCBIGRCr8
mRatBN7.25149,118,843 - 149,124,394 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5149,118,846 - 149,124,407 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5151,816,561 - 151,822,125 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05153,590,844 - 153,596,412 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05153,572,841 - 153,578,409 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05155,246,444 - 155,251,995 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5155,246,447 - 155,252,003 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05159,008,943 - 159,014,494 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,647,524 - 155,653,074 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15155,657,561 - 155,663,111 (-)NCBI
Celera5147,516,569 - 147,522,120 (-)NCBICelera
Cytogenetic Map5q36NCBI
C1qb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554522,769,752 - 2,772,534 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554522,765,844 - 2,771,695 (+)NCBIChiLan1.0ChiLan1.0
C1QB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21204,286,150 - 204,294,489 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11203,389,167 - 203,397,493 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,838,514 - 21,846,855 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1122,787,003 - 22,795,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl122,786,685 - 22,797,581 (+)Ensemblpanpan1.1panPan2
C1QB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,650,440 - 76,655,546 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,650,586 - 76,655,549 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,155,325 - 73,160,431 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0277,209,671 - 77,214,788 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl277,209,676 - 77,214,730 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,030,566 - 74,035,681 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,038,974 - 75,044,092 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0276,042,588 - 76,047,706 (-)NCBIUU_Cfam_GSD_1.0
C1QB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,601,665 - 80,607,471 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,601,680 - 80,606,076 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,625,450 - 74,629,848 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C1QB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120110,003,036 - 110,011,317 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20110,002,864 - 110,011,316 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660336,302,466 - 6,310,665 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C1qb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247647,376,967 - 7,383,445 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247647,377,013 - 7,382,953 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in C1QB
126 total Variants

1 to 10 of 151 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001378156.1(C1QB):c.523C>T (p.Arg175Ter) single nucleotide variant C1Q deficiency 2 [RCV003221349] Chr1:22661153 [GRCh38]
Chr1:22987646 [GRCh37]
Chr1:1p36.12
pathogenic|likely pathogenic
GRCh38/hg38 1p36.12(chr1:21399130-22696747)x1 copy number loss See cases [RCV000138071] Chr1:21399130..22696747 [GRCh38]
Chr1:21725623..23023240 [GRCh37]
Chr1:21598210..22895827 [NCBI36]
Chr1:1p36.12
likely pathogenic|uncertain significance
Single allele complex Breast ductal adenocarcinoma [RCV000207058] Chr1:909238..24706269 [GRCh37]
Chr1:1p36.33-36.11
uncertain significance
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
chr1:17555508-24706269 complex variant complex Breast ductal adenocarcinoma [RCV000207266] Chr1:17555508..24706269 [GRCh37]
Chr1:1p36.13-36.11
uncertain significance
NM_001378156.1(C1QB):c.394del (p.Leu132fs) deletion not provided [RCV000488091] Chr1:22661020 [GRCh38]
Chr1:22987513 [GRCh37]
Chr1:1p36.12
likely pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_001378156.1(C1QB):c.724G>A (p.Gly242Arg) single nucleotide variant C1Q deficiency [RCV000508980] Chr1:22661354 [GRCh38]
Chr1:22987847 [GRCh37]
Chr1:1p36.12
pathogenic
NM_001378156.1(C1QB):c.181+1G>T single nucleotide variant C1Q deficiency 2 [RCV003221354] Chr1:22659644 [GRCh38]
Chr1:22986137 [GRCh37]
Chr1:1p36.12
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
1 to 10 of 151 rows

Predicted Target Of
Summary Value
Count of predictions:1068
Count of miRNA genes:490
Interacting mature miRNAs:534
Transcripts:ENST00000314933, ENST00000432749, ENST00000509305, ENST00000510260
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597176746GWAS1272820_Hcomplement C1q subcomponent subunit C measurement QTL GWAS1272820 (human)2e-27complement C1q subcomponent subunit C measurement12265991022659911Human
597189683GWAS1285757_Hlevel of Sphingomyelin (d38:2) in blood serum QTL GWAS1285757 (human)3e-08level of Sphingomyelin (d38:2) in blood serum12266022322660224Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human

RH78269  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37122,987,859 - 22,987,992UniSTSGRCh37
Build 36122,860,446 - 22,860,579RGDNCBI36
Celera121,312,521 - 21,312,654RGD
Cytogenetic Map1p36.12UniSTS
HuRef121,232,128 - 21,232,261UniSTS
GeneMap99-GB4 RH Map179.87UniSTS
NCBI RH Map1110.0UniSTS
RH70806  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37122,987,648 - 22,987,901UniSTSGRCh37
Build 36122,860,235 - 22,860,488RGDNCBI36
Celera121,312,310 - 21,312,563RGD
Cytogenetic Map1p36.12UniSTS
HuRef121,231,917 - 21,232,170UniSTS
GeneMap99-GB4 RH Map179.87UniSTS
PMC115884P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37122,987,473 - 22,987,847UniSTSGRCh37
Build 36122,860,060 - 22,860,434RGDNCBI36
Celera121,312,135 - 21,312,509RGD
Cytogenetic Map1p36.12UniSTS
HuRef121,231,742 - 21,232,116UniSTS
C1QB_68.2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37122,987,478 - 22,988,181UniSTSGRCh37
Build 36122,860,065 - 22,860,768RGDNCBI36
Celera121,312,140 - 21,312,843RGD
HuRef121,231,747 - 21,232,450UniSTS
SHGC-74363  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37122,987,494 - 22,987,643UniSTSGRCh37
Build 36122,860,081 - 22,860,230RGDNCBI36
Celera121,312,156 - 21,312,305RGD
Cytogenetic Map1p36.12UniSTS
HuRef121,231,763 - 21,231,912UniSTS
TNG Radiation Hybrid Map18996.0UniSTS
GeneMap99-GB4 RH Map179.87UniSTS
Whitehead-RH Map176.6UniSTS
SHGC-74365  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37122,987,319 - 22,987,511UniSTSGRCh37
Build 36122,859,906 - 22,860,098RGDNCBI36
Celera121,311,981 - 21,312,173RGD
Cytogenetic Map1p36.12UniSTS
HuRef121,231,588 - 21,231,780UniSTS
TNG Radiation Hybrid Map18996.0UniSTS
GeneMap99-GB4 RH Map179.87UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2326 2788 2230 4659 1694 2111 3 604 1364 442 2025 6578 5876 8 3652 802 1645 1403 165 1


1 to 18 of 18 rows
RefSeq Transcripts NG_007283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA838059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI125081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL158086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI489644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI823081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ711602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA425453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K03430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L80036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M36278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X03084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 18 of 18 rows

Ensembl Acc Id: ENST00000314933   ⟹   ENSP00000313967
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,189 - 22,661,536 (+)Ensembl
Ensembl Acc Id: ENST00000432749   ⟹   ENSP00000404606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,189 - 22,661,316 (+)Ensembl
Ensembl Acc Id: ENST00000509305   ⟹   ENSP00000423689
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,236 - 22,661,637 (+)Ensembl
Ensembl Acc Id: ENST00000510260   ⟹   ENSP00000426317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,652,762 - 22,661,090 (+)Ensembl
Ensembl Acc Id: ENST00000695754   ⟹   ENSP00000512147
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,190 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695755   ⟹   ENSP00000512148
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,190 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695756   ⟹   ENSP00000512149
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,190 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695757   ⟹   ENSP00000512150
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,190 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695758   ⟹   ENSP00000512151
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,190 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695759   ⟹   ENSP00000512152
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,190 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695760   ⟹   ENSP00000512153
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,190 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695761   ⟹   ENSP00000512154
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,190 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695762   ⟹   ENSP00000512155
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,653,203 - 22,661,535 (+)Ensembl
Ensembl Acc Id: ENST00000695763   ⟹   ENSP00000512156
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl122,659,399 - 22,661,535 (+)Ensembl
RefSeq Acc Id: NM_000491   ⟹   NP_000482
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38122,653,236 - 22,661,637 (+)NCBI
GRCh37122,979,682 - 22,988,130 (+)NCBI
Build 36122,852,269 - 22,860,616 (+)NCBI Archive
HuRef121,224,021 - 21,232,298 (+)ENTREZGENE
CHM1_1123,092,196 - 23,100,535 (+)NCBI
T2T-CHM13v2.0122,478,246 - 22,486,577 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001371184   ⟹   NP_001358113
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38122,653,236 - 22,661,637 (+)NCBI
T2T-CHM13v2.0122,478,246 - 22,486,577 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378156   ⟹   NP_001365085
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38122,653,236 - 22,661,637 (+)NCBI
T2T-CHM13v2.0122,478,246 - 22,486,577 (+)NCBI
Sequence:
1 to 5 of 17 rows
1 to 5 of 17 rows
RefSeq Acc Id: NP_000482   ⟸   NM_000491
- Peptide Label: isoform 1 precursor
- UniProtKB: Q5T959 (UniProtKB/Swiss-Prot),   Q96H17 (UniProtKB/Swiss-Prot),   P02746 (UniProtKB/Swiss-Prot),   A0A024RAB9 (UniProtKB/TrEMBL),   A0A3B0J0A0 (UniProtKB/TrEMBL),   A0A8Q3SI33 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001358113   ⟸   NM_001371184
- Peptide Label: isoform 2 precursor
- UniProtKB: D6R934 (UniProtKB/TrEMBL),   A0A8Q3SI33 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365085   ⟸   NM_001378156
- Peptide Label: isoform 2 precursor
- UniProtKB: D6R934 (UniProtKB/TrEMBL),   A0A8Q3SI33 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSP00000423689   ⟸   ENST00000509305
Ensembl Acc Id: ENSP00000426317   ⟸   ENST00000510260
C1q   Collagen-like

Name Modeler Protein Id AA Range Protein Structure
AF-P02746-F1-model_v2 AlphaFold P02746 1-253 view protein structure

RGD ID:6854446
Promoter ID:EPDNEW_H388
Type:initiation region
Name:C1QB_1
Description:complement C1q B chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38122,653,236 - 22,653,296EPDNEW


1 to 40 of 42 rows
Database
Acc Id
Source(s)
COSMIC C1QB COSMIC
Ensembl Genes ENSG00000173369 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000432749 ENTREZGENE
  ENST00000509305 ENTREZGENE
Gene3D-CATH 2.60.120.40 UniProtKB/Swiss-Prot
GTEx ENSG00000173369 GTEx
HGNC ID HGNC:1242 ENTREZGENE
Human Proteome Map C1QB Human Proteome Map
InterPro C1q_dom UniProtKB/Swiss-Prot
  Collagen UniProtKB/Swiss-Prot
  Collagen/C1q_domain UniProtKB/Swiss-Prot
  Tumour_necrosis_fac-like_dom UniProtKB/Swiss-Prot
KEGG Report hsa:713 UniProtKB/Swiss-Prot
NCBI Gene 713 ENTREZGENE
OMIM 120570 OMIM
PANTHER COMPLEMENT C1Q SUBCOMPONENT SUBUNIT B UniProtKB/Swiss-Prot
  EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/Swiss-Prot
Pfam C1q UniProtKB/Swiss-Prot
  Collagen UniProtKB/Swiss-Prot
PharmGKB C1QB RGD, PharmGKB
PRINTS COMPLEMNTC1Q UniProtKB/Swiss-Prot
PROSITE C1Q UniProtKB/Swiss-Prot
SMART C1Q UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49842 UniProtKB/Swiss-Prot
UniProt A0A024RAB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A0MSV6_HUMAN UniProtKB/TrEMBL
  A0A3B0J0A0 ENTREZGENE
  A0A8Q3SI33 ENTREZGENE, UniProtKB/TrEMBL
  A0A8Q3SI50_HUMAN UniProtKB/TrEMBL
  A0A8Q3SI72_HUMAN UniProtKB/TrEMBL
  A0A8Q3WKR5_HUMAN UniProtKB/TrEMBL
  A0A8Q3WLT6_HUMAN UniProtKB/TrEMBL
  A0A8Q3WM25_HUMAN UniProtKB/TrEMBL
  C1QB_HUMAN UniProtKB/Swiss-Prot
  D6R934 ENTREZGENE, UniProtKB/TrEMBL
  D6RGJ1_HUMAN UniProtKB/TrEMBL
  P02746 ENTREZGENE
  Q5T959 ENTREZGENE
  Q6LDZ7_HUMAN UniProtKB/TrEMBL
  Q96H17 ENTREZGENE
1 to 40 of 42 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-12 C1QB  complement C1q B chain  C1QB  complement component 1, q subcomponent, B chain  Symbol and/or name change 5135510 APPROVED