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Gene: TNFSF4 (TNF superfamily member 4) Homo sapiens

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Symbol:

TNFSF4

Name:

TNF superfamily member 4

RGD ID:

1345164

HGNC Page

HGNC:11934

Description:

Predicted to enable tumor necrosis factor receptor superfamily binding activity. Involved in several processes, including cellular response to lipopolysaccharide; cellular response to prostaglandin E stimulus; and regulation of cytokine production. Located in cell surface and extracellular space. Implicated in myocardial infarction. Biomarker of cervical squamous cell carcinoma.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

CD134 ligand; CD134L; CD252; glycoprotein Gp34; GP34; OX-40L; OX40 antigen ligand; OX40L; OX4OL; TAX transcriptionally-activated glycoprotein 1; tax-transcriptionally activated glycoprotein 1 (34kD); TNLG2B; tumor necrosis factor (ligand) superfamily member 4; tumor necrosis factor ligand 2B; tumor necrosis factor ligand superfamily member 4; tumor necrosis factor superfamily member 4; TXGP1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	173,172,870 - 173,450,733 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	173,162,645 - 173,477,583 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	173,152,870 - 173,176,470 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	171,419,493 - 171,443,094 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	169,884,527 - 169,908,128	NCBI
Celera	1	146,262,332 - 146,285,933 (-)	NCBI		Celera
Cytogenetic Map	1	q25.1	NCBI
HuRef	1	144,377,608 - 144,401,209 (-)	NCBI		HuRef
CHM1_1	1	174,575,344 - 174,598,945 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	172,541,831 - 172,768,144 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	cervical squamous cell carcinoma	severity	IEP		38455996		RGD
TNFSF4	Human	myocardial infarction		IAGP		1580396		RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	1q24 Deletion Syndrome		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: 1q24q25 microdeletion syndrome	ClinVar	PMID:25741868
TNFSF4	Human	1q24 Deletion Syndrome		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: 1q24q25 microdeletion syndrome	ClinVar	PMID:21548129 more ...
TNFSF4	Human	antithrombin III deficiency		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary antithrombin deficiency	ClinVar
TNFSF4	Human	autoimmune lymphoproliferative syndrome		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROME more ...	ClinVar	PMID:22857792 more ...
TNFSF4	Human	autoimmune lymphoproliferative syndrome		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROME more ...	ClinVar	PMID:28492532
TNFSF4	Human	gastrointestinal stromal tumor		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
TNFSF4	Human	parathyroid carcinoma		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	dilated cardiomyopathy		EXP		11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:12031769
TNFSF4	Human	leishmaniasis		EXP		11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:10637281
TNFSF4	Human	myocardial infarction		EXP		11554173	CTD Direct Evidence: marker/mechanism	CTD
TNFSF4	Human	myocarditis		EXP		11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:12031769
TNFSF4	Human	systemic lupus erythematosus		EXP		11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18059267 and PMID:19838193
TNFSF4	Human	viral infectious disease		EXP		11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:12031769

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	primary pulmonary hypertension		ISS	Tnfsf4 (Mus musculus)	13592920	OMIM:178600 more ...	MouseDO
TNFSF4	Human	type 1 diabetes mellitus		ISS	Tnfsf4 (Mus musculus)	13592920	OMIM:222100	MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	myocardial infarction	susceptibility	IAGP		7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	(-)-demecolcine	increases expression	EXP		6480464	Demecolcine results in increased expression of TNFSF4 mRNA	CTD	PMID:23649840
TNFSF4	Human	1D-myo-inositol 1,4,5-trisphosphate	increases abundance	EXP		6480464	TNFSF4 protein results in increased abundance of Inositol 1 more ...	CTD	PMID:19416722
TNFSF4	Human	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Tnfsf4 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of TNFSF4 mRNA	CTD	PMID:18684927
TNFSF4	Human	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of TNFSF4 mRNA	CTD	PMID:32109520
TNFSF4	Human	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of TNFSF4 mRNA	CTD	PMID:20106945 and PMID:21632981
TNFSF4	Human	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Tnfsf4 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of TNFSF4 mRNA	CTD	PMID:14718646 and PMID:15972635
TNFSF4	Human	2,4,6-trinitrobenzenesulfonic acid	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Trinitrobenzenesulfonic Acid results in increased expression of TNFSF4 mRNA	CTD	PMID:23537331
TNFSF4	Human	2-palmitoylglycerol	increases expression	EXP		6480464	2-palmitoylglycerol results in increased expression of TNFSF4 mRNA	CTD	PMID:37199045
TNFSF4	Human	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	EXP		6480464	[Dexamethasone co-treated with 8-Bromo Cyclic Adenosine Monophosphate co-treated with 1-Methyl-3-isobutylxanthine] results in decreased expression of TNFSF4 mRNA	CTD	PMID:16997883
TNFSF4	Human	6-propyl-2-thiouracil	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of TNFSF4 mRNA	CTD	PMID:24780913
TNFSF4	Human	8-Br-cAMP	multiple interactions	EXP		6480464	[Dexamethasone co-treated with 8-Bromo Cyclic Adenosine Monophosphate co-treated with 1-Methyl-3-isobutylxanthine] results in decreased expression of TNFSF4 mRNA	CTD	PMID:16997883
TNFSF4	Human	aflatoxin B1	affects expression	EXP		6480464	Aflatoxin B1 affects the expression of TNFSF4 protein	CTD	PMID:20106945
TNFSF4	Human	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of TNFSF4 mRNA	CTD	PMID:21641981
TNFSF4	Human	all-trans-retinoic acid	increases expression	EXP		6480464	Tretinoin results in increased expression of TNFSF4 mRNA	CTD	PMID:23724009
TNFSF4	Human	alpha-amanitin	affects expression	ISO	Tnfsf4 (Mus musculus)	6480464	Alpha-Amanitin affects the expression of TNFSF4 mRNA	CTD	PMID:38531469
TNFSF4	Human	aluminium hydroxide	multiple interactions	ISO	Tnfsf4 (Mus musculus)	6480464	[Ovalbumin co-treated with Aluminum Hydroxide] results in increased expression of TNFSF4 mRNA and nonylphenol promotes the reaction [[Ovalbumin co-treated with Aluminum Hydroxide] results in increased expression of TNFSF4 mRNA]	CTD	PMID:36029577
TNFSF4	Human	ammonium chloride	affects expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Ammonium Chloride affects the expression of TNFSF4 mRNA	CTD	PMID:16483693
TNFSF4	Human	amphotericin B	decreases expression	EXP		6480464	Amphotericin B analog results in decreased expression of TNFSF4 mRNA	CTD	PMID:28534445
TNFSF4	Human	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of TNFSF4 mRNA	CTD	PMID:20064835 more ...
TNFSF4	Human	benzo[a]pyrene	affects methylation	EXP		6480464	Benzo(a)pyrene affects the methylation of TNFSF4 3' UTR	CTD	PMID:27901495
TNFSF4	Human	benzo[a]pyrene	multiple interactions	EXP		6480464	[Benzo(a)pyrene co-treated with benzo(b)fluoranthene] affects the expression of TNFSF4 mRNA	CTD	PMID:17690111
TNFSF4	Human	benzo[b]fluoranthene	multiple interactions	EXP		6480464	[Benzo(a)pyrene co-treated with benzo(b)fluoranthene] affects the expression of TNFSF4 mRNA	CTD	PMID:17690111
TNFSF4	Human	bis(2-chloroethyl) sulfide	increases expression	ISO	Tnfsf4 (Mus musculus)	6480464	Mustard Gas results in increased expression of TNFSF4 mRNA	CTD	PMID:19778212
TNFSF4	Human	bisphenol A	decreases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of TNFSF4 mRNA	CTD	PMID:27178563
TNFSF4	Human	bisphenol A	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of TNFSF4 mRNA	CTD	PMID:30816183 and PMID:32528016
TNFSF4	Human	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of TNFSF4 mRNA	CTD	PMID:29275510
TNFSF4	Human	bisphenol A	affects expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	bisphenol A affects the expression of TNFSF4 mRNA	CTD	PMID:25181051
TNFSF4	Human	bisphenol A	multiple interactions	ISO	Tnfsf4 (Rattus norvegicus)	6480464	[bisphenol A co-treated with Testosterone] results in decreased expression of TNFSF4 mRNA	CTD	PMID:26496021
TNFSF4	Human	Bisphenol B	increases expression	EXP		6480464	bisphenol B results in increased expression of TNFSF4 mRNA	CTD	PMID:32387340
TNFSF4	Human	bleomycin A2	increases expression	ISO	Tnfsf4 (Mus musculus)	6480464	Bleomycin results in increased expression of TNFSF4 mRNA	CTD	PMID:36087614
TNFSF4	Human	butanal	decreases expression	EXP		6480464	butyraldehyde results in decreased expression of TNFSF4 mRNA	CTD	PMID:26079696
TNFSF4	Human	C60 fullerene	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	fullerene C60 results in increased expression of TNFSF4 mRNA	CTD	PMID:20471445
TNFSF4	Human	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of TNFSF4 mRNA	CTD	PMID:38382870
TNFSF4	Human	caffeine	increases expression	EXP		6480464	Caffeine results in increased expression of TNFSF4 mRNA	CTD	PMID:18444173
TNFSF4	Human	calcipotriol	multiple interactions	ISO	Tnfsf4 (Mus musculus)	6480464	[lithol rubine BCA analog results in increased susceptibility to calcipotriene] which results in increased expression of TNFSF4 mRNA and [lithol rubine BCA results in increased susceptibility to calcipotriene] which results in increased expression of TNFSF4 mRNA	CTD	PMID:29462589
TNFSF4	Human	carbamazepine	affects expression	EXP		6480464	Carbamazepine affects the expression of TNFSF4 mRNA	CTD	PMID:25979313
TNFSF4	Human	carbon monoxide	multiple interactions	ISO	Tnfsf4 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Carbon Monoxide co-treated with Nitrogen Oxides co-treated with Sulfur Dioxide]] which results in increased expression of TNFSF4 mRNA	CTD	PMID:29621558
TNFSF4	Human	carbon nanotube	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Nanotubes and Carbon results in increased expression of TNFSF4 mRNA	CTD	PMID:24911292
TNFSF4	Human	ceric oxide	affects expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	ceric oxide affects the expression of TNFSF4 mRNA	CTD	PMID:29463257
TNFSF4	Human	CGP 52608	multiple interactions	EXP		6480464	CGP 52608 promotes the reaction [RORA protein binds to TNFSF4 gene]	CTD	PMID:28238834
TNFSF4	Human	cobalt dichloride	decreases expression	EXP		6480464	cobaltous chloride results in decreased expression of TNFSF4 mRNA	CTD	PMID:19320972
TNFSF4	Human	copper(II) sulfate	decreases expression	EXP		6480464	Copper Sulfate results in decreased expression of TNFSF4 mRNA	CTD	PMID:19549813
TNFSF4	Human	cyclosporin A	decreases expression	EXP		6480464	Cyclosporine results in decreased expression of TNFSF4 mRNA	CTD	PMID:25562108
TNFSF4	Human	cyclosporin A	increases expression	EXP		6480464	Cyclosporine results in increased expression of TNFSF4 mRNA	CTD	PMID:27989131
TNFSF4	Human	dexamethasone	multiple interactions	EXP		6480464	[Dexamethasone co-treated with 8-Bromo Cyclic Adenosine Monophosphate co-treated with 1-Methyl-3-isobutylxanthine] results in decreased expression of TNFSF4 mRNA	CTD	PMID:16997883
TNFSF4	Human	Dibutyl phosphate	affects expression	EXP		6480464	di-n-butylphosphoric acid affects the expression of TNFSF4 mRNA	CTD	PMID:37042841
TNFSF4	Human	disodium selenite	decreases expression	EXP		6480464	Sodium Selenite results in decreased expression of TNFSF4 mRNA	CTD	PMID:18175754
TNFSF4	Human	dorsomorphin	multiple interactions	EXP		6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of TNFSF4 mRNA	CTD	PMID:27188386
TNFSF4	Human	epoxiconazole	increases expression	ISO	Tnfsf4 (Mus musculus)	6480464	epoxiconazole results in increased expression of TNFSF4 mRNA	CTD	PMID:35436446
TNFSF4	Human	ethanol	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Ethanol results in increased expression of TNFSF4 mRNA	CTD	PMID:31078653
TNFSF4	Human	ethyl methanesulfonate	increases expression	EXP		6480464	Ethyl Methanesulfonate results in increased expression of TNFSF4 mRNA	CTD	PMID:23649840
TNFSF4	Human	flavonoids	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Flavonoids results in increased expression of TNFSF4 mRNA	CTD	PMID:18035473
TNFSF4	Human	formaldehyde	increases expression	EXP		6480464	Formaldehyde results in increased expression of TNFSF4 mRNA	CTD	PMID:23649840
TNFSF4	Human	fragrance	increases expression	EXP		6480464	Perfume results in increased expression of TNFSF4 mRNA	CTD	PMID:24768652
TNFSF4	Human	genistein	decreases expression	EXP		6480464	Genistein results in decreased expression of TNFSF4 mRNA	CTD	PMID:18444173
TNFSF4	Human	graphite	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Graphite results in increased expression of TNFSF4 mRNA	CTD	PMID:29933104
TNFSF4	Human	hydrogen peroxide	increases expression	EXP		6480464	Hydrogen Peroxide results in increased expression of TNFSF4 mRNA	CTD	PMID:18951874
TNFSF4	Human	isoflurane	decreases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Isoflurane results in decreased expression of TNFSF4 mRNA	CTD	PMID:16978161
TNFSF4	Human	leflunomide	increases expression	EXP		6480464	leflunomide results in increased expression of TNFSF4 mRNA	CTD	PMID:28988120
TNFSF4	Human	lipopolysaccharide	decreases expression	EXP		6480464	Lipopolysaccharides results in decreased expression of TNFSF4 mRNA	CTD	PMID:31059760
TNFSF4	Human	methotrexate	increases expression	EXP		6480464	Methotrexate results in increased expression of TNFSF4 mRNA	CTD	PMID:17400583
TNFSF4	Human	methyl methanesulfonate	increases expression	EXP		6480464	Methyl Methanesulfonate results in increased expression of TNFSF4 mRNA	CTD	PMID:23649840
TNFSF4	Human	mevalonic acid	multiple interactions	EXP		6480464	Mevalonic Acid inhibits the reaction [Simvastatin inhibits the reaction [IFNG results in increased expression of TNFSF4 mRNA]] and Mevalonic Acid inhibits the reaction [Simvastatin inhibits the reaction [IFNG results in increased expression of TNFSF4 protein]]	CTD	PMID:19589242
TNFSF4	Human	N,N-diethyl-m-toluamide	multiple interactions	ISO	Tnfsf4 (Rattus norvegicus)	6480464	[Permethrin co-treated with DEET] results in increased methylation of TNFSF4 gene	CTD	PMID:33148267
TNFSF4	Human	N-acetyl-L-cysteine	multiple interactions	EXP		6480464	Acetylcysteine inhibits the reaction [Particulate Matter results in increased expression of TNFSF4 mRNA] and Acetylcysteine inhibits the reaction [Vehicle Emissions results in increased expression of TNFSF4 mRNA]	CTD	PMID:20974985
TNFSF4	Human	nickel atom	increases expression	EXP		6480464	Nickel results in increased expression of TNFSF4 mRNA	CTD	PMID:24768652
TNFSF4	Human	niclosamide	increases expression	EXP		6480464	Niclosamide results in increased expression of TNFSF4 mRNA	CTD	PMID:36318118
TNFSF4	Human	Nonylphenol	multiple interactions	ISO	Tnfsf4 (Mus musculus)	6480464	nonylphenol promotes the reaction [[Ovalbumin co-treated with Aluminum Hydroxide] results in increased expression of TNFSF4 mRNA]	CTD	PMID:36029577
TNFSF4	Human	O-methyleugenol	decreases expression	EXP		6480464	methyleugenol results in decreased expression of TNFSF4 mRNA	CTD	PMID:32234424
TNFSF4	Human	p-menthan-3-ol	increases expression	EXP		6480464	Menthol results in increased expression of TNFSF4 mRNA	CTD	PMID:26760959
TNFSF4	Human	paraquat	increases expression	ISO	Tnfsf4 (Mus musculus)	6480464	Paraquat results in increased expression of TNFSF4 mRNA	CTD	PMID:22938100
TNFSF4	Human	pentobarbital	decreases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Pentobarbital results in decreased expression of TNFSF4 mRNA	CTD	PMID:16978161
TNFSF4	Human	perfluorooctanoic acid	increases expression	EXP		6480464	perfluorooctanoic acid results in increased expression of TNFSF4 mRNA	CTD	PMID:36326898
TNFSF4	Human	permethrin	multiple interactions	ISO	Tnfsf4 (Rattus norvegicus)	6480464	[Permethrin co-treated with DEET] results in increased methylation of TNFSF4 gene	CTD	PMID:33148267
TNFSF4	Human	quercetin	decreases expression	EXP		6480464	Quercetin results in decreased expression of TNFSF4 mRNA	CTD	PMID:21632981
TNFSF4	Human	SB 431542	multiple interactions	EXP		6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of TNFSF4 mRNA	CTD	PMID:27188386
TNFSF4	Human	simvastatin	multiple interactions	EXP		6480464	Mevalonic Acid inhibits the reaction [Simvastatin inhibits the reaction [IFNG results in increased expression of TNFSF4 mRNA]] more ...	CTD	PMID:19589242
TNFSF4	Human	simvastatin	decreases expression	EXP		6480464	Simvastatin results in decreased expression of TNFSF4 mRNA and Simvastatin results in decreased expression of TNFSF4 protein	CTD	PMID:19589242
TNFSF4	Human	sodium arsenite	increases expression	EXP		6480464	sodium arsenite results in increased expression of TNFSF4 mRNA	CTD	PMID:20886546
TNFSF4	Human	sodium arsenite	decreases expression	EXP		6480464	sodium arsenite results in decreased expression of TNFSF4 mRNA	CTD	PMID:34032870
TNFSF4	Human	sodium arsenite	affects expression	EXP		6480464	sodium arsenite affects the expression of TNFSF4 mRNA	CTD	PMID:29319823
TNFSF4	Human	sulfur dioxide	multiple interactions	ISO	Tnfsf4 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Carbon Monoxide co-treated with Nitrogen Oxides co-treated with Sulfur Dioxide]] which results in increased expression of TNFSF4 mRNA	CTD	PMID:29621558
TNFSF4	Human	tacrine	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Tacrine results in increased expression of TNFSF4 mRNA	CTD	PMID:12832660
TNFSF4	Human	testosterone	multiple interactions	ISO	Tnfsf4 (Rattus norvegicus)	6480464	[bisphenol A co-treated with Testosterone] results in decreased expression of TNFSF4 mRNA	CTD	PMID:26496021
TNFSF4	Human	thapsigargin	increases expression	EXP		6480464	Thapsigargin results in increased expression of TNFSF4 mRNA	CTD	PMID:22378314
TNFSF4	Human	trichloroethene	decreases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	Trichloroethylene results in decreased expression of TNFSF4 mRNA	CTD	PMID:33387578
TNFSF4	Human	triphenyl phosphate	affects expression	EXP		6480464	triphenyl phosphate affects the expression of TNFSF4 mRNA	CTD	PMID:37042841
TNFSF4	Human	tris(2-butoxyethyl) phosphate	affects expression	EXP		6480464	tris(2-butoxyethyl) phosphate affects the expression of TNFSF4 mRNA	CTD	PMID:29024780
TNFSF4	Human	tunicamycin	increases expression	EXP		6480464	Tunicamycin results in increased expression of TNFSF4 mRNA	CTD	PMID:22378314
TNFSF4	Human	urethane	decreases expression	EXP		6480464	Urethane results in decreased expression of TNFSF4 mRNA	CTD	PMID:28818685
TNFSF4	Human	usnic acid	increases expression	EXP		6480464	usnic acid results in increased expression of TNFSF4 mRNA	CTD	PMID:32508146
TNFSF4	Human	valproic acid	affects expression	ISO	Tnfsf4 (Mus musculus)	6480464	Valproic Acid affects the expression of TNFSF4 mRNA	CTD	PMID:17292431
TNFSF4	Human	valproic acid	multiple interactions	EXP		6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of TNFSF4 mRNA	CTD	PMID:27188386
TNFSF4	Human	valproic acid	decreases expression	EXP		6480464	Valproic Acid results in decreased expression of TNFSF4 mRNA	CTD	PMID:26272509
TNFSF4	Human	valproic acid	affects expression	EXP		6480464	Valproic Acid affects the expression of TNFSF4 mRNA	CTD	PMID:25979313
TNFSF4	Human	vinclozolin	increases expression	ISO	Tnfsf4 (Rattus norvegicus)	6480464	vinclozolin results in increased expression of TNFSF4 mRNA	CTD	PMID:18629315
TNFSF4	Human	vincristine	increases expression	EXP		6480464	Vincristine results in increased expression of TNFSF4 mRNA	CTD	PMID:23649840
TNFSF4	Human	zinc atom	multiple interactions	ISO	Tnfsf4 (Mus musculus)	6480464	[Zinc deficiency promotes the reaction [TRP53 gene mutant form results in increased susceptibility to nitrosobenzylmethylamine]] which results in increased expression of TNFSF4 mRNA	CTD	PMID:12517797
TNFSF4	Human	zinc(0)	multiple interactions	ISO	Tnfsf4 (Mus musculus)	6480464	[Zinc deficiency promotes the reaction [TRP53 gene mutant form results in increased susceptibility to nitrosobenzylmethylamine]] which results in increased expression of TNFSF4 mRNA	CTD	PMID:12517797

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	acute inflammatory response	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	CD4-positive, alpha-beta T cell costimulation	involved_in	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:20639485	BHF-UCL	PMID:20639485
TNFSF4	Human	cellular response to lipopolysaccharide	involved_in	IDA		150520179	PMID:20844189	BHF-UCL	PMID:20844189
TNFSF4	Human	cellular response to nitrogen dioxide	involved_in	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:20659336	BHF-UCL	PMID:20659336
TNFSF4	Human	cellular response to prostaglandin E stimulus	involved_in	IDA		150520179	PMID:19029446	BHF-UCL	PMID:19029446
TNFSF4	Human	cholesterol metabolic process	acts_upstream_of_or_within	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:3473481	MGI	PMID:3473481
TNFSF4	Human	cytokine production		ISO	Tnfsf4 (Rattus norvegicus)	9068941		RGD	PMID:10772947 and REF_RGD_ID:2289071
TNFSF4	Human	defense response to nematode	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	immune response	involved_in	IEA	InterPro:IPR006052	150520179		InterPro	GO_REF:0000002
TNFSF4	Human	inflammatory response	involved_in	IBA	MGI:104511 and PANTHER:PTN000426256	150520179		GO_Central	GO_REF:0000033
TNFSF4	Human	inflammatory response	acts_upstream_of_or_within	ISO	PR:P47741	9068941	PMID:14635034	MGI	PMID:14635034
TNFSF4	Human	memory T cell activation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	negative regulation of cytokine production	acts_upstream_of_or_within	ISO	PR:P47741	9068941	PMID:14635034	MGI	PMID:14635034
TNFSF4	Human	negative regulation of DNA-binding transcription factor activity	involved_in	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:7749983	BHF-UCL	PMID:7749983
TNFSF4	Human	negative regulation of DNA-templated transcription	involved_in	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:7749983	BHF-UCL	PMID:7749983
TNFSF4	Human	negative regulation of interleukin-17 production	involved_in	IDA		150520179	PMID:18501882	BHF-UCL	PMID:18501882
TNFSF4	Human	negative regulation of regulatory T cell differentiation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	negative regulation of T-helper 1 cell differentiation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	negative regulation of transcription by RNA polymerase II	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	negative regulation of type II interferon production	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of activated T cell proliferation		ISO	Tnfsf4 (Rattus norvegicus)	9068941		RGD	PMID:9790919 and REF_RGD_ID:634509
TNFSF4	Human	positive regulation of alpha-beta T cell proliferation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of B cell activation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of CD4-positive, alpha-beta T cell costimulation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of CD4-positive, alpha-beta T cell differentiation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of cell population proliferation	involved_in	TAS		150520179	PMID:7913952	PINC	PMID:7913952
TNFSF4	Human	positive regulation of chemokine production	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of cytokine production	involved_in	IBA	MGI:104511 more ...	150520179		GO_Central	GO_REF:0000033
TNFSF4	Human	positive regulation of immunoglobulin mediated immune response	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of immunoglobulin production	involved_in	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:7749983	BHF-UCL	PMID:7749983
TNFSF4	Human	positive regulation of immunoglobulin production	acts_upstream_of	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of inflammatory response	involved_in	IDA		150520179	PMID:20844189	BHF-UCL	PMID:20844189
TNFSF4	Human	positive regulation of interleukin-10 production	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of interleukin-12 production	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of interleukin-13 production	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of interleukin-2 production		ISO	Tnfsf4 (Rattus norvegicus)	9068941		RGD	PMID:9790919 and REF_RGD_ID:634509
TNFSF4	Human	positive regulation of interleukin-4 production	involved_in	IDA		150520179	PMID:18501882	BHF-UCL	PMID:18501882
TNFSF4	Human	positive regulation of interleukin-4-dependent isotype switching to IgE isotypes	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of interleukin-6 production	involved_in	IDA		150520179	PMID:20844189	BHF-UCL	PMID:20844189
TNFSF4	Human	positive regulation of memory T cell activation	involved_in	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:12496423	BHF-UCL	PMID:12496423
TNFSF4	Human	positive regulation of memory T cell differentiation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of T cell costimulation	involved_in	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:20639485	BHF-UCL	PMID:20639485
TNFSF4	Human	positive regulation of T cell cytokine production	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of T cell proliferation	involved_in	IBA	MGI:104511 more ...	150520179		GO_Central	GO_REF:0000033
TNFSF4	Human	positive regulation of T-helper 2 cell activation	involved_in	ISO	Tnfsf4 (Mus musculus)	9068941	PMID:12496423	BHF-UCL	PMID:12496423
TNFSF4	Human	positive regulation of T-helper 2 cell differentiation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of type 2 immune response	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	positive regulation of type II interferon production	involved_in	IDA		150520179	PMID:18501882	BHF-UCL	PMID:18501882
TNFSF4	Human	regulation of adaptive immune response	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	regulation of inflammatory response	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	response to nitrogen dioxide	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	response to virus	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	signal transduction	involved_in	IEA	GO:0005125	150520179		GOC	GO_REF:0000108
TNFSF4	Human	signal transduction	involved_in	TAS		150520179	PMID:7913952	PINC	PMID:7913952
TNFSF4	Human	T cell proliferation		ISO	Tnfsf4 (Rattus norvegicus)	9068941		RGD	PMID:10772947 and REF_RGD_ID:2289071
TNFSF4	Human	T-helper 2 cell activation	involved_in	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	cell surface		ISO	Tnfsf4 (Rattus norvegicus)	9068941		RGD	PMID:9790919 and REF_RGD_ID:634509
TNFSF4	Human	cell surface	located_in	IDA		150520179	PMID:18397322	BHF-UCL	PMID:18397322
TNFSF4	Human	extracellular space	located_in	IDA		150520179	PMID:17166734	BHF-UCL	PMID:17166734
TNFSF4	Human	extracellular space	is_active_in	IBA	PANTHER:PTN000426256 and UniProtKB:P23510	150520179		GO_Central	GO_REF:0000033
TNFSF4	Human	extracellular space	located_in	IEA	UniProtKB-KW:KW-0202	150520179		UniProt	GO_REF:0000043
TNFSF4	Human	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	150520179		UniProt	GO_REF:0000044
TNFSF4	Human	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
TNFSF4	Human	membrane	located_in	IEA	InterPro:IPR006052	150520179		InterPro	GO_REF:0000002
TNFSF4	Human	plasma membrane	located_in	TAS		150520179	PMID:7913952	PINC	PMID:7913952 and Reactome:R-HSA-5692315
TNFSF4	Human	plasma membrane	located_in	NAS		150520179	PMID:18397322	BHF-UCL	PMID:18397322

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	cytokine activity	enables	IEA	UniProtKB-KW:KW-0202	150520179		UniProt	GO_REF:0000043
TNFSF4	Human	cytokine activity	enables	IEA	InterPro:IPR042338	150520179		InterPro	GO_REF:0000002
TNFSF4	Human	protein binding	enables	IPI	UniProtKB:P43488 and UniProtKB:P43489	150520179	PMID:16905106	IntAct	PMID:16905106
TNFSF4	Human	signaling receptor binding	enables	TAS		150520179	PMID:7913952	PINC	PMID:7913952
TNFSF4	Human	signaling receptor binding	enables	IEA	ARBA:ARBA00027239	150520179		UniProt	GO_REF:0000117
TNFSF4	Human	tumor necrosis factor receptor binding	enables	IEA	InterPro:IPR006052	150520179		InterPro	GO_REF:0000002
TNFSF4	Human	tumor necrosis factor receptor superfamily binding		ISO	Tnfsf4 (Rattus norvegicus)	9068941		RGD	PMID:10772947 and REF_RGD_ID:2289071
TNFSF4	Human	tumor necrosis factor receptor superfamily binding	enables	IBA	MGI:104511 more ...	150520179		GO_Central	GO_REF:0000033
TNFSF4	Human	tumor necrosis factor receptor superfamily binding	enables	ISS	UniProtKB:P43488	150520179		BHF-UCL	GO_REF:0000024
TNFSF4	Human	tumor necrosis factor receptor superfamily binding		ISO	Tnfrsf4 (Mus musculus)	9068941		RGD	PMID:9790919 and REF_RGD_ID:634509

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	Abnormal pigmentation of the oral mucosa		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Abnormal pupillary function		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Abnormal rapid eye movement sleep		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Abnormality of salivation		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Alopecia		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anorexia		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-complement component C1q antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-dsDNA antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-La/SS-B antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-nucleoporin 62 antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-phosphatidic acid antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-ribosome Po antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-Ro52/TRIM21 antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-Sm antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-titin antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anti-U1 ribonucleoprotein antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Antineutrophil antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Antinuclear antibody positivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Anxiety		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Arthritis		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Attention deficit hyperactivity disorder		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Cataplexy		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Cheilitis		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Chorea		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Constipation		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Cutaneous photosensitivity		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Decreased circulating complement C3 concentration		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Decreased circulating complement C4 concentration		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Depression		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Depression		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Discoid lupus rash		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Drooling		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Excessive daytime somnolence		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Fatigue		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Female sexual dysfunction		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Fever		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Hallucinations		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Hematuria		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Hemolytic anemia		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Hyperhidrosis		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Hypertension		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Hypertension		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Hypnagogic hallucination		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Hypnopompic hallucination		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Leukopenia		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Lupus nephritis		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Lymphadenopathy		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Malaise		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Malar rash		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Male sexual dysfunction		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Migraine		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Nocturia		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	NREM parasomnia		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Obesity		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Oral ulcer		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Polyarticular arthritis		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Precocious puberty		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Proteinuria		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Psychosis		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Pyuria		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Raynaud phenomenon		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Restless legs		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Restlessness		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Retinopathy		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Seizure		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Serositis		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Sleep abnormality		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Sleep apnea		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Sleep paralysis		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Slurred speech		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Syncope		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Thrombocytopenia		IAGP		8699517		HPO	ORPHA:536
TNFSF4	Human	Transient global amnesia		IAGP		8699517		HPO	ORPHA:2073
TNFSF4	Human	Weight loss		IAGP		8699517		HPO	ORPHA:536

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNFSF4	Human	Gastrointestinal stroma tumor		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
TNFSF4	Human	Parathyroid carcinoma		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
TNFSF4	Human	Reduced antithrombin III activity		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Reduced antithrombin III activity	ClinVar

#	Reference Title	Reference Citation
1.	GOAs Human GO annotations	GOA_HUMAN data from the GO Consortium
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	RGD HPO Phenotype Annotation Pipeline	RGD automated import pipeline for human HPO-to-gene-to-disease annotations
5.	Positional identification of TNFSF4, encoding OX40 ligand, as a gene that influences atherosclerosis susceptibility.	Wang X, etal., Nat Genet. 2005 Apr;37(4):365-72. Epub 2005 Mar 6.
6.	Negative immune factors might predominate local tumor immune status and promote carcinogenesis in cervical carcinoma.	Zhao M, etal., Virol J. 2017 Jan 13;14(1):5. doi: 10.1186/s12985-016-0670-8.

PMID:1996093	PMID:7913952	PMID:8076595	PMID:8642328	PMID:9108415	PMID:9378971	PMID:9418902	PMID:9603911	PMID:9862675	PMID:10358148	PMID:11069062	PMID:11197696
PMID:11346458	PMID:12134113	PMID:12477932	PMID:12624783	PMID:12798307	PMID:15034038	PMID:15100674	PMID:15218969	PMID:15356117	PMID:15470070	PMID:16272289	PMID:16275760
PMID:16710414	PMID:16905106	PMID:16924108	PMID:17016617	PMID:17166734	PMID:17185358	PMID:17584577	PMID:17666213	PMID:18059267	PMID:18060034	PMID:18174230	PMID:18356244
PMID:18397322	PMID:18398332	PMID:18501882	PMID:18674525	PMID:18718855	PMID:18832690	PMID:18987746	PMID:18998106	PMID:19029446	PMID:19029970	PMID:19083191	PMID:19092840
PMID:19357697	PMID:19494280	PMID:19573080	PMID:19578796	PMID:19663699	PMID:19773279	PMID:19778912	PMID:19838193	PMID:19913121	PMID:19951374	PMID:20012871	PMID:20139223
PMID:20190752	PMID:20237496	PMID:20307208	PMID:20331378	PMID:20568250	PMID:20628086	PMID:20677014	PMID:20844189	PMID:20848568	PMID:20861858	PMID:20881011	PMID:20962850
PMID:21068098	PMID:21102463	PMID:21143648	PMID:21187296	PMID:21239696	PMID:21397857	PMID:21402531	PMID:21441570	PMID:21445270	PMID:21476935	PMID:21781408	PMID:21820713
PMID:21873635	PMID:21986129	PMID:22156349	PMID:22422496	PMID:22646697	PMID:22760717	PMID:22820624	PMID:22847298	PMID:22850862	PMID:22870213	PMID:23184501	PMID:23216302
PMID:23273568	PMID:23469620	PMID:23589118	PMID:23622253	PMID:23635951	PMID:23740937	PMID:23874208	PMID:23936824	PMID:23948416	PMID:23953582	PMID:24091983	PMID:24583911
PMID:24595151	PMID:24679586	PMID:24999842	PMID:25359291	PMID:26070486	PMID:26125814	PMID:26348892	PMID:26646413	PMID:27008001	PMID:27012942	PMID:27088737	PMID:27107937
PMID:27519474	PMID:27556446	PMID:27708417	PMID:27872495	PMID:28713926	PMID:29032462	PMID:29321210	PMID:29424751	PMID:29554934	PMID:29921578	PMID:29949525	PMID:30041578
PMID:30468820	PMID:30562687	PMID:30614039	PMID:30723312	PMID:30789234	PMID:30794011	PMID:30797237	PMID:30890137	PMID:31240276	PMID:31299880	PMID:31467932	PMID:31501955
PMID:31783796	PMID:32097938	PMID:32176307	PMID:32208776	PMID:32647184	PMID:32809147	PMID:33132120	PMID:33161796	PMID:33287909	PMID:33777009	PMID:34084166	PMID:34282497
PMID:34538280	PMID:34830466	PMID:35078374	PMID:35265719	PMID:35835012	PMID:38142184	PMID:38607026	PMID:38982447

TNFSF4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	173,172,870 - 173,450,733 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	173,162,645 - 173,477,583 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	173,152,870 - 173,176,470 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	171,419,493 - 171,443,094 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	169,884,527 - 169,908,128	NCBI
Celera	1	146,262,332 - 146,285,933 (-)	NCBI		Celera
Cytogenetic Map	1	q25.1	NCBI
HuRef	1	144,377,608 - 144,401,209 (-)	NCBI		HuRef
CHM1_1	1	174,575,344 - 174,598,945 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	172,541,831 - 172,768,144 (-)	NCBI		T2T-CHM13v2.0

Tnfsf4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	161,223,009 - 161,245,777 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	161,222,980 - 161,245,981 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	161,395,438 - 161,418,206 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	161,395,409 - 161,418,410 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	163,325,569 - 163,348,337 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	163,232,135 - 163,254,883 (+)	NCBI		MGSCv36	mm8
Celera	1	163,843,815 - 163,866,564 (+)	NCBI		Celera
Cytogenetic Map	1	H2.1	NCBI
cM Map	1	69.75	NCBI

Tnfsf4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	76,256,654 - 76,280,133 (+)	NCBI		GRCr8
mRatBN7.2	13	73,723,329 - 73,746,809 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	73,723,329 - 73,746,788 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	76,302,498 - 76,326,020 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	77,600,036 - 77,623,530 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	74,859,914 - 74,883,412 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	79,269,973 - 79,293,775 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	79,269,973 - 79,293,778 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	84,166,838 - 84,190,566 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	77,026,337 - 77,050,223 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	77,040,524 - 77,064,407 (+)	NCBI
Celera	13	73,499,753 - 73,523,609 (+)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

Tnfsf4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	13,477,077 - 13,493,309 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	13,477,077 - 13,493,309 (-)	NCBI	ChiLan1.0	ChiLan1.0

TNFSF4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	76,255,433 - 76,559,453 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	75,929,208 - 76,396,416 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	148,684,689 - 148,989,775 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	152,391,450 - 152,699,026 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	152,251,683 - 152,262,668 (-)	Ensembl	panpan1.1		panPan2
PanPan1.1 Ensembl	1	152,391,450 - 152,415,845 (-)	Ensembl	panpan1.1		panPan2

TNFSF4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	25,883,297 - 25,909,608 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	25,883,251 - 25,906,892 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	25,415,436 - 25,441,738 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	25,634,585 - 25,660,879 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	25,634,528 - 25,660,603 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	25,553,133 - 25,579,437 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	25,626,526 - 25,652,838 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	25,780,205 - 25,806,523 (+)	NCBI		UU_Cfam_GSD_1.0

Tnfsf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	96,542,360 - 96,562,833 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936481	14,391,359 - 14,409,514 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNFSF4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	115,550,569 - 115,659,263 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	115,535,185 - 115,857,457 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	127,042,208 - 127,049,271 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TNFSF4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	55,714,291 - 55,998,009 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	55,974,691 - 55,997,374 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	57,291,046 - 57,591,856 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnfsf4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624771	8,580,489 - 8,599,735 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in TNFSF4
42 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 1q23.1-25.1(chr1:157747246-176021247)x3	copy number gain	See cases [RCV000051854]	Chr1:157747246..176021247 [GRCh38] Chr1:157717036..175990383 [GRCh37] Chr1:155983660..174257006 [NCBI36] Chr1:1q23.1-25.1	pathogenic
GRCh38/hg38 1q23.3-25.2(chr1:164922655-180061589)x3	copy number gain	See cases [RCV000051856]	Chr1:164922655..180061589 [GRCh38] Chr1:164891892..180030724 [GRCh37] Chr1:163158516..178297347 [NCBI36] Chr1:1q23.3-25.2	pathogenic
GRCh38/hg38 1q24.2-25.1(chr1:168314822-175299299)x1	copy number loss	See cases [RCV000053918]	Chr1:168314822..175299299 [GRCh38] Chr1:168284060..175268435 [GRCh37] Chr1:166550684..173535058 [NCBI36] Chr1:1q24.2-25.1	pathogenic
GRCh38/hg38 1q23.3-25.1(chr1:161740907-173965154)x1	copy number loss	See cases [RCV000053914]	Chr1:161740907..173965154 [GRCh38] Chr1:161710697..173934292 [GRCh37] Chr1:159977321..172200915 [NCBI36] Chr1:1q23.3-25.1	pathogenic
GRCh38/hg38 1q24.1-25.1(chr1:166762832-175327423)x1	copy number loss	See cases [RCV000053917]	Chr1:166762832..175327423 [GRCh38] Chr1:166732069..175296559 [GRCh37] Chr1:164998693..173563182 [NCBI36] Chr1:1q24.1-25.1	pathogenic
GRCh38/hg38 1q24.3-31.1(chr1:171039975-186875957)x3	copy number gain	See cases [RCV000134876]	Chr1:171039975..186875957 [GRCh38] Chr1:171009116..186845089 [GRCh37] Chr1:169275740..185111712 [NCBI36] Chr1:1q24.3-31.1	pathogenic
GRCh38/hg38 1q24.2-25.2(chr1:169218236-178075834)x1	copy number loss	See cases [RCV000137128]	Chr1:169218236..178075834 [GRCh38] Chr1:169187474..178044969 [GRCh37] Chr1:167454098..176311592 [NCBI36] Chr1:1q24.2-25.2	pathogenic
GRCh38/hg38 1q24.3-31.2(chr1:170929720-191065409)x1	copy number loss	See cases [RCV000142369]	Chr1:170929720..191065409 [GRCh38] Chr1:170898861..191034539 [GRCh37] Chr1:169165485..189301162 [NCBI36] Chr1:1q24.3-31.2	pathogenic
GRCh38/hg38 1q23.3-25.1(chr1:163382523-175877022)x1	copy number loss	See cases [RCV000143292]	Chr1:163382523..175877022 [GRCh38] Chr1:163352313..175846158 [GRCh37] Chr1:161618937..174112781 [NCBI36] Chr1:1q23.3-25.1	pathogenic
GRCh38/hg38 1q24.2-31.1(chr1:170036068-187555148)x1	copy number loss	See cases [RCV000143688]	Chr1:170036068..187555148 [GRCh38] Chr1:170005209..187524280 [GRCh37] Chr1:168271833..185790903 [NCBI36] Chr1:1q24.2-31.1	pathogenic
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3	copy number gain	See cases [RCV000143515]	Chr1:149854269..180267197 [GRCh38] Chr1:149825831..180236332 [GRCh37] Chr1:148092455..178502955 [NCBI36] Chr1:1q21.2-25.2	pathogenic
GRCh37/hg19 1q24.2-25.3(chr1:169423492-180367623)	copy number gain	not provided [RCV000767621]	Chr1:169423492..180367623 [GRCh37] Chr1:1q24.2-25.3	pathogenic
GRCh37/hg19 1q24.3-25.3(chr1:172742952-181814496)x1	copy number loss	See cases [RCV000239775]	Chr1:172742952..181814496 [GRCh37] Chr1:1q24.3-25.3	pathogenic
GRCh37/hg19 1q23.2-25.1(chr1:160369890-175796325)	copy number loss	not provided [RCV000767779]	Chr1:160369890..175796325 [GRCh37] Chr1:1q23.2-25.1	pathogenic
GRCh37/hg19 1q23.3-25.3(chr1:161676893-184071723)x1	copy number loss	See cases [RCV000447098]	Chr1:161676893..184071723 [GRCh37] Chr1:1q23.3-25.3	pathogenic
GRCh37/hg19 1q24.2-25.3(chr1:169873155-181823980)x1	copy number loss	See cases [RCV000447593]	Chr1:169873155..181823980 [GRCh37] Chr1:1q24.2-25.3	pathogenic
GRCh37/hg19 1q24.3-31.3(chr1:171990029-195086758)x1	copy number loss	See cases [RCV000448686]	Chr1:171990029..195086758 [GRCh37] Chr1:1q24.3-31.3	pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3	copy number gain	See cases [RCV000510383]	Chr1:849467..249224684 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)	copy number gain	See cases [RCV000510926]	Chr1:849467..249224684 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1q25.1-25.3(chr1:173138799-185129406)x3	copy number gain	See cases [RCV000512520]	Chr1:173138799..185129406 [GRCh37] Chr1:1q25.1-25.3	likely pathogenic
GRCh37/hg19 1q25.1(chr1:173064278-173167101)x1	copy number loss	not provided [RCV000684672]	Chr1:173064278..173167101 [GRCh37] Chr1:1q25.1	likely benign
Single allele	deletion	1q24q25 microdeletion syndrome [RCV000754969]	Chr1:169095250..175778910 [GRCh37] Chr1:1q24.2-25.1	pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3	copy number gain	not provided [RCV000736295]	Chr1:47851..249228449 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3	copy number gain	not provided [RCV000736305]	Chr1:82154..249218992 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1q23.2-25.2(chr1:159815642-177026983)x1	copy number loss	not provided [RCV000736717]	Chr1:159815642..177026983 [GRCh37] Chr1:1q23.2-25.2	pathogenic
GRCh37/hg19 1q25.1-31.1(chr1:173131908-187406532)x1	copy number loss	not provided [RCV000736735]	Chr1:173131908..187406532 [GRCh37] Chr1:1q25.1-31.1	pathogenic
NM_003326.5(TNFSF4):c.478C>T (p.Leu160=)	single nucleotide variant	not provided [RCV000924085]	Chr1:173186590 [GRCh38] Chr1:173155729 [GRCh37] Chr1:1q25.1	likely benign
NC_000001.10:g.172652343_183538289del10885947	deletion	1q24q25 microdeletion syndrome [RCV000785662]	Chr1:172652343..183538289 [GRCh37] Chr1:1q24.3-25.3	pathogenic
GRCh37/hg19 1q25.1(chr1:173036654-173333855)x1	copy number loss	not provided [RCV000849605]	Chr1:173036654..173333855 [GRCh37] Chr1:1q25.1	uncertain significance
NM_003326.5(TNFSF4):c.186C>T (p.Ile62=)	single nucleotide variant	not provided [RCV000952464]	Chr1:173188537 [GRCh38] Chr1:173157676 [GRCh37] Chr1:1q25.1	benign
GRCh37/hg19 1q24.2-25.1(chr1:167430471-174635618)x1	copy number loss	not provided [RCV001005149]	Chr1:167430471..174635618 [GRCh37] Chr1:1q24.2-25.1	pathogenic
GRCh37/hg19 1q25.1(chr1:173047673-173339681)x1	copy number loss	not provided [RCV001258484]	Chr1:173047673..173339681 [GRCh37] Chr1:1q25.1	uncertain significance
GRCh37/hg19 1q25.1-25.3(chr1:173162501-182702252)x3	copy number gain	not provided [RCV001258487]	Chr1:173162501..182702252 [GRCh37] Chr1:1q25.1-25.3	pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup	duplication	Gastrointestinal stromal tumor [RCV001300221]\|Parathyroid carcinoma [RCV001341077]	Chr1:130980840..248900000 [GRCh37] Chr1:1q12-44	uncertain significance
NC_000001.11:g.172987296_174843232del	deletion	Hereditary antithrombin deficiency [RCV001779981]	Chr1:172987296..174843232 [GRCh38] Chr1:1q24.3-25.1	pathogenic
NC_000001.10:g.(?_171605065)_(173962123_?)del	deletion	Autoimmune lymphoproliferative syndrome type 1 [RCV001947302]\|not provided [RCV001947303]	Chr1:171605065..173962123 [GRCh37] Chr1:1q24.3-25.1	pathogenic\|uncertain significance\|no classifications from unflagged records
GRCh37/hg19 1q24.3-25.1(chr1:171881608-175899893)	copy number loss	not specified [RCV002053725]	Chr1:171881608..175899893 [GRCh37] Chr1:1q24.3-25.1	pathogenic
GRCh37/hg19 1q24.3-31.3(chr1:171990029-195086758)	copy number loss	not specified [RCV002053736]	Chr1:171990029..195086758 [GRCh37] Chr1:1q24.3-31.3	pathogenic
GRCh37/hg19 1q24.2-25.3(chr1:169873155-181823980)	copy number loss	not specified [RCV002053713]	Chr1:169873155..181823980 [GRCh37] Chr1:1q24.2-25.3	pathogenic
NC_000001.10:g.(?_171605065)_(173962123_?)dup	duplication	Autoimmune lymphoproliferative syndrome type 1 [RCV001939952]	Chr1:171605065..173962123 [GRCh37] Chr1:1q24.3-25.1	uncertain significance
NM_003326.5(TNFSF4):c.164G>A (p.Arg55Gln)	single nucleotide variant	not specified [RCV004237404]	Chr1:173188559 [GRCh38] Chr1:173157698 [GRCh37] Chr1:1q25.1	likely benign
NM_003326.5(TNFSF4):c.385C>G (p.Leu129Val)	single nucleotide variant	not specified [RCV004173794]	Chr1:173186683 [GRCh38] Chr1:173155822 [GRCh37] Chr1:1q25.1	uncertain significance
NM_003326.5(TNFSF4):c.262G>A (p.Val88Met)	single nucleotide variant	not specified [RCV004179522]	Chr1:173186806 [GRCh38] Chr1:173155945 [GRCh37] Chr1:1q25.1	uncertain significance
NM_003326.5(TNFSF4):c.347G>A (p.Ser116Asn)	single nucleotide variant	not specified [RCV004173154]	Chr1:173186721 [GRCh38] Chr1:173155860 [GRCh37] Chr1:1q25.1	uncertain significance
GRCh37/hg19 1q23.3-25.1(chr1:164571371-175708060)x1	copy number loss	not provided [RCV003483966]	Chr1:164571371..175708060 [GRCh37] Chr1:1q23.3-25.1	pathogenic
GRCh37/hg19 1q25.1-25.3(chr1:173162501-182702252)x3	copy number gain	not specified [RCV003986506]	Chr1:173162501..182702252 [GRCh37] Chr1:1q25.1-25.3	pathogenic
GRCh37/hg19 1q24.2-31.1(chr1:167994071-187711459)x1	copy number loss	not specified [RCV003987250]	Chr1:167994071..187711459 [GRCh37] Chr1:1q24.2-31.1	pathogenic
NM_003326.5(TNFSF4):c.499G>A (p.Gly167Ser)	single nucleotide variant	not specified [RCV004473237]	Chr1:173186569 [GRCh38] Chr1:173155708 [GRCh37] Chr1:1q25.1	uncertain significance
NC_000001.10:g.(?_171604992)_(173962123_?)dup	duplication	not provided [RCV004579177]	Chr1:171604992..173962123 [GRCh37] Chr1:1q24.3-25.1	uncertain significance
NM_003326.5(TNFSF4):c.247G>A (p.Asp83Asn)	single nucleotide variant	not specified [RCV004882873]	Chr1:173186821 [GRCh38] Chr1:173155960 [GRCh37] Chr1:1q25.1	uncertain significance

Predicted Target Of

	Summary Value
Count of predictions:	2585
Count of miRNA genes:	743
Interacting mature miRNAs:	846
Transcripts:	ENST00000281834, ENST00000367718, ENST00000488053
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
597452572	GWAS1548646_H	IGA glomerulonephritis QTL GWAS1548646 (human)		0.0000005	IGA glomerulonephritis		1	173177218	173177219	Human
597437212	GWAS1533286_H	systemic lupus erythematosus QTL GWAS1533286 (human)		3e-19	systemic lupus erythematosus		1	173257056	173257057	Human
597501341	GWAS1597415_H	rheumatoid arthritis, anti-citrullinated protein antibody seropositivity, rheumatoid factor seropositivity measurement QTL GWAS1597415 (human)		3e-09	rheumatoid arthritis, anti-citrullinated protein antibody seropositivity, rheumatoid factor seropositivity measurement		1	173337507	173337508	Human
597050256	GWAS1146330_H	Eczematoid dermatitis QTL GWAS1146330 (human)		4e-18	Eczematoid dermatitis		1	173194429	173194430	Human
597452566	GWAS1548640_H	IGA glomerulonephritis QTL GWAS1548640 (human)		5e-08	IGA glomerulonephritis		1	173177218	173177219	Human
597467030	GWAS1563104_H	rheumatoid arthritis QTL GWAS1563104 (human)		3e-09	rheumatoid arthritis		1	173330604	173330605	Human
597505303	GWAS1601377_H	rheumatoid arthritis QTL GWAS1601377 (human)		2e-08	rheumatoid arthritis		1	173337507	173337508	Human
597393424	GWAS1489498_H	eosinophil percentage of leukocytes QTL GWAS1489498 (human)		1e-18	eosinophil quantity (VT:0002602)	blood eosinophil count to total leukocyte count ratio (CMO:0000369)	1	173262759	173262760	Human
407305687	GWAS954663_H	asthma QTL GWAS954663 (human)		2e-14	asthma		1	173201479	173201480	Human
597491338	GWAS1587412_H	R-warfarin measurement QTL GWAS1587412 (human)		0.000003	R-warfarin measurement		1	173305990	173305991	Human
597461642	GWAS1557716_H	rheumatoid arthritis QTL GWAS1557716 (human)		1e-08	rheumatoid arthritis		1	173380586	173380587	Human
597437195	GWAS1533269_H	systemic lupus erythematosus QTL GWAS1533269 (human)		6e-12	systemic lupus erythematosus		1	173377204	173377205	Human
597476229	GWAS1572303_H	systemic lupus erythematosus QTL GWAS1572303 (human)		0.0000008	systemic lupus erythematosus		1	173337507	173337508	Human
597208194	GWAS1304268_H	childhood onset asthma QTL GWAS1304268 (human)		2e-11	childhood onset asthma		1	173194429	173194430	Human
597279874	GWAS1375948_H	rheumatoid arthritis QTL GWAS1375948 (human)		1e-10	rheumatoid arthritis		1	173197108	173197109	Human
597205635	GWAS1301709_H	rheumatoid arthritis QTL GWAS1301709 (human)		2e-09	rheumatoid arthritis		1	173197108	173197109	Human
597357958	GWAS1454032_H	vein graft stenosis QTL GWAS1454032 (human)		0.000009	vein graft stenosis		1	173331701	173331702	Human
597454848	GWAS1550922_H	systemic lupus erythematosus QTL GWAS1550922 (human)		4e-08	systemic lupus erythematosus		1	173399532	173399533	Human
597463808	GWAS1559882_H	sensory perception of sweet taste QTL GWAS1559882 (human)		0.000003	sensory perception of sweet taste		1	173406706	173406707	Human
597505920	GWAS1601994_H	rheumatoid arthritis, anti-citrullinated protein antibody seropositivity, rheumatoid factor seropositivity measurement QTL GWAS1601994 (human)		1e-11	rheumatoid arthritis, anti-citrullinated protein antibody seropositivity, rheumatoid factor seropositivity measurement		1	173337507	173337508	Human
597366022	GWAS1462096_H	chronotype measurement QTL GWAS1462096 (human)		6e-09	sleep behavior trait (VT:0001501)		1	173430538	173430539	Human
597366331	GWAS1462405_H	eosinophil count QTL GWAS1462405 (human)		5e-20	eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	1	173262759	173262760	Human
597457982	GWAS1554056_H	eosinophil count QTL GWAS1554056 (human)		6e-13	eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	1	173250332	173250333	Human
597191485	GWAS1287559_H	systemic lupus erythematosus QTL GWAS1287559 (human)		2e-11	systemic lupus erythematosus		1	173197108	173197109	Human
597461946	GWAS1558020_H	Eczematoid dermatitis QTL GWAS1558020 (human)		5e-09	Eczematoid dermatitis		1	173182897	173182898	Human
597437498	GWAS1533572_H	systemic lupus erythematosus QTL GWAS1533572 (human)		4e-19	systemic lupus erythematosus		1	173282717	173282718	Human
597393074	GWAS1489148_H	eosinophil count QTL GWAS1489148 (human)		1e-15	eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	1	173262759	173262760	Human
597016871	GWAS1112945_H	mosquito bite reaction itch intensity measurement QTL GWAS1112945 (human)		0.0000009	mosquito bite reaction itch intensity measurement		1	173262759	173262760	Human
597360041	GWAS1456115_H	systemic lupus erythematosus QTL GWAS1456115 (human)		2e-15	systemic lupus erythematosus		1	173282717	173282718	Human
597378600	GWAS1474674_H	systemic lupus erythematosus QTL GWAS1474674 (human)		0.0000001	systemic lupus erythematosus		1	173340574	173340575	Human
597372207	GWAS1468281_H	chronotype measurement QTL GWAS1468281 (human)		1e-11	sleep behavior trait (VT:0001501)		1	173430538	173430539	Human
597405613	GWAS1501687_H	total blood protein measurement QTL GWAS1501687 (human)		1e-08	total blood protein measurement	blood protein measurement (CMO:0000028)	1	173177951	173177952	Human
407304177	GWAS953153_H	asthma QTL GWAS953153 (human)		2e-16	asthma		1	173201479	173201480	Human
597378210	GWAS1474284_H	systemic lupus erythematosus QTL GWAS1474284 (human)		3e-32	systemic lupus erythematosus		1	173222336	173222337	Human
596953384	GWAS1072903_H	respiratory system disease QTL GWAS1072903 (human)		2e-15	respiratory system disease		1	173194429	173194430	Human
597360164	GWAS1456238_H	systemic lupus erythematosus QTL GWAS1456238 (human)		2e-08	systemic lupus erythematosus		1	173282717	173282718	Human
597292376	GWAS1388450_H	respiratory system disease QTL GWAS1388450 (human)		2e-15	respiratory system disease		1	173194429	173194430	Human
597355483	GWAS1451557_H	systemic lupus erythematosus QTL GWAS1451557 (human)		3e-12	systemic lupus erythematosus		1	173222336	173222337	Human
597357787	GWAS1453861_H	rheumatoid arthritis QTL GWAS1453861 (human)		7e-13	rheumatoid arthritis		1	173380586	173380587	Human
597354456	GWAS1450530_H	multiple sclerosis QTL GWAS1450530 (human)		0.000007	multiple sclerosis		1	173315060	173315061	Human
597247194	GWAS1343268_H	asthma QTL GWAS1343268 (human)		3e-08	asthma		1	173201479	173201480	Human
597379295	GWAS1475369_H	diabetic retinopathy QTL GWAS1475369 (human)		0.000004	diabetic retinopathy		1	173332377	173332378	Human
597514840	GWAS1610914_H	systemic scleroderma QTL GWAS1610914 (human)		6e-12	systemic scleroderma		1	173349525	173349526	Human
597357788	GWAS1453862_H	rheumatoid arthritis QTL GWAS1453862 (human)		3e-11	rheumatoid arthritis		1	173380586	173380587	Human
597515349	GWAS1611423_H	systemic lupus erythematosus QTL GWAS1611423 (human)		4e-28	systemic lupus erythematosus		1	173376445	173376446	Human
597477584	GWAS1573658_H	systemic lupus erythematosus QTL GWAS1573658 (human)		8e-14	systemic lupus erythematosus		1	173247234	173247235	Human
596969177	GWAS1088696_H	systemic lupus erythematosus QTL GWAS1088696 (human)		0.000003	systemic lupus erythematosus		1	173394963	173394964	Human
597111514	GWAS1207588_H	asthma QTL GWAS1207588 (human)		5e-09	asthma		1	173194429	173194430	Human
597269844	GWAS1365918_H	rheumatoid arthritis, ACPA-positive rheumatoid arthritis, rheumatoid factor seropositivity measurement QTL GWAS1365918 (human)		0.000007	rheumatoid arthritis, ACPA-positive rheumatoid arthritis, rheumatoid factor seropositivity measurement		1	173197108	173197109	Human
597475794	GWAS1571868_H	systemic lupus erythematosus QTL GWAS1571868 (human)		3e-90	systemic lupus erythematosus		1	173222336	173222337	Human
597311317	GWAS1407391_H	Inhalant adrenergic use measurement QTL GWAS1407391 (human)		9e-09	Inhalant adrenergic use measurement		1	173185165	173185166	Human
597475795	GWAS1571869_H	systemic lupus erythematosus QTL GWAS1571869 (human)		2e-37	systemic lupus erythematosus		1	173390048	173390049	Human
597349067	GWAS1445141_H	atopic eczema QTL GWAS1445141 (human)		7e-14	atopic eczema		1	173199182	173199183	Human
597620431	GWAS1677291_H	tricuspid valve disease QTL GWAS1677291 (human)		2e-13	tricuspid valve disease		1	173409694	173409695	Human
597478350	GWAS1574424_H	systemic lupus erythematosus QTL GWAS1574424 (human)		1e-30	systemic lupus erythematosus		1	173222336	173222337	Human
597514831	GWAS1610905_H	systemic scleroderma QTL GWAS1610905 (human)		5e-12	systemic scleroderma		1	173274442	173274443	Human
596963777	GWAS1083296_H	type 2 diabetes mellitus QTL GWAS1083296 (human)		0.0000005	type 2 diabetes mellitus		1	173282717	173282718	Human
597459017	GWAS1555091_H	type 2 diabetes mellitus QTL GWAS1555091 (human)		0.0000005	type 2 diabetes mellitus		1	173282717	173282718	Human
597530309	GWAS1626383_H	color vision disorder QTL GWAS1626383 (human)		0.0000001	color vision disorder		1	173251776	173251777	Human
597375299	GWAS1471373_H	body mass index QTL GWAS1471373 (human)		2e-09	body mass index	body mass index (BMI) (CMO:0000105)	1	173430538	173430539	Human
597400898	GWAS1496972_H	systemic lupus erythematosus QTL GWAS1496972 (human)		7e-11	systemic lupus erythematosus		1	173338762	173338763	Human
597057229	GWAS1153303_H	Eczematoid dermatitis, allergic rhinitis QTL GWAS1153303 (human)		2e-13	Eczematoid dermatitis, allergic rhinitis		1	173201479	173201480	Human
597466695	GWAS1562769_H	rheumatoid arthritis QTL GWAS1562769 (human)		0.000005	rheumatoid arthritis		1	173330604	173330605	Human
597400646	GWAS1496720_H	reading and spelling ability QTL GWAS1496720 (human)		0.000007	reading and spelling ability		1	173266988	173266989	Human
597356922	GWAS1452996_H	systemic scleroderma, systemic lupus erythematosus QTL GWAS1452996 (human)		0.0000004	systemic scleroderma, systemic lupus erythematosus		1	173257056	173257057	Human
597399035	GWAS1495109_H	systemic lupus erythematosus QTL GWAS1495109 (human)		0.000003	systemic lupus erythematosus		1	173394963	173394964	Human
597476221	GWAS1572295_H	systemic lupus erythematosus QTL GWAS1572295 (human)		0.0000002	systemic lupus erythematosus		1	173222336	173222337	Human
597461886	GWAS1557960_H	rheumatoid arthritis QTL GWAS1557960 (human)		1e-10	rheumatoid arthritis		1	173380586	173380587	Human
597502206	GWAS1598280_H	rheumatoid arthritis QTL GWAS1598280 (human)		4e-12	rheumatoid arthritis		1	173337507	173337508	Human
597390717	GWAS1486791_H	systemic scleroderma, rheumatoid arthritis, myositis, systemic lupus erythematosus QTL GWAS1486791 (human)		3e-08	systemic scleroderma, rheumatoid arthritis, myositis, systemic lupus erythematosus		1	173368608	173368609	Human
597454843	GWAS1550917_H	systemic lupus erythematosus QTL GWAS1550917 (human)		1e-12	systemic lupus erythematosus		1	173222336	173222337	Human
597510010	GWAS1606084_H	eosinophil count QTL GWAS1606084 (human)		4e-09	eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	1	173240356	173240357	Human
597515642	GWAS1611716_H	systemic lupus erythematosus QTL GWAS1611716 (human)		1e-46	systemic lupus erythematosus		1	173257056	173257057	Human
597471092	GWAS1567166_H	systemic lupus erythematosus QTL GWAS1567166 (human)		0.000009	systemic lupus erythematosus		1	173209324	173209325	Human
597527413	GWAS1623487_H	nephrotic syndrome QTL GWAS1623487 (human)		0.000006	nephrotic syndrome		1	173250332	173250333	Human
597469044	GWAS1565118_H	systemic scleroderma QTL GWAS1565118 (human)		5e-09	systemic scleroderma		1	173363490	173363491	Human
597054207	GWAS1150281_H	asthma QTL GWAS1150281 (human)		2e-09	asthma		1	173201479	173201480	Human
597438835	GWAS1534909_H	systemic lupus erythematosus QTL GWAS1534909 (human)		6e-09	systemic lupus erythematosus		1	173222336	173222337	Human
597511538	GWAS1607612_H	systemic lupus erythematosus, COVID-19 QTL GWAS1607612 (human)		3e-13	systemic lupus erythematosus, COVID-19		1	173359729	173359731	Human
597359592	GWAS1455666_H	systemic lupus erythematosus QTL GWAS1455666 (human)		8e-09	systemic lupus erythematosus		1	173378698	173378699	Human
597359593	GWAS1455667_H	systemic lupus erythematosus QTL GWAS1455667 (human)		3e-13	systemic lupus erythematosus		1	173237158	173237159	Human
597058402	GWAS1154476_H	asthma, Eczematoid dermatitis, allergic rhinitis QTL GWAS1154476 (human)		1e-13	asthma, Eczematoid dermatitis, allergic rhinitis		1	173201479	173201480	Human
597533033	GWAS1629107_H	body mass index QTL GWAS1629107 (human)		5e-09	body mass index	body mass index (BMI) (CMO:0000105)	1	173430538	173430539	Human
597477606	GWAS1573680_H	systemic lupus erythematosus QTL GWAS1573680 (human)		2e-52	systemic lupus erythematosus		1	173241650	173241651	Human
597436647	GWAS1532721_H	allergic disease QTL GWAS1532721 (human)		1e-15	allergic disease		1	173177782	173177783	Human
597532390	GWAS1628464_H	atopic eczema QTL GWAS1628464 (human)		2e-39	atopic eczema		1	173181588	173181589	Human
597046893	GWAS1142967_H	atopic asthma QTL GWAS1142967 (human)		7e-10	atopic asthma		1	173202534	173202535	Human
597360230	GWAS1456304_H	asthma QTL GWAS1456304 (human)		3e-08	asthma		1	173182897	173182898	Human
597046506	GWAS1142580_H	childhood onset asthma QTL GWAS1142580 (human)		1e-11	childhood onset asthma		1	173202534	173202535	Human

RH17450

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	173,152,989 - 173,153,259	UniSTS	GRCh37
Build 36	1	171,419,612 - 171,419,882	RGD	NCBI36
Celera	1	146,262,451 - 146,262,721	RGD
Cytogenetic Map	1	q25	UniSTS
HuRef	1	144,377,727 - 144,377,997	UniSTS
GeneMap99-GB4 RH Map	1	623.3	UniSTS

G42294

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	173,159,437 - 173,159,603	UniSTS	GRCh37
Build 36	1	171,426,060 - 171,426,226	RGD	NCBI36
Celera	1	146,268,899 - 146,269,065	RGD
Cytogenetic Map	1	q25	UniSTS
HuRef	1	144,384,175 - 144,384,341	UniSTS

G15923

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	173,153,801 - 173,153,925	UniSTS	GRCh37
Build 36	1	171,420,424 - 171,420,548	RGD	NCBI36
Celera	1	146,263,263 - 146,263,387	RGD
Cytogenetic Map	1	q25	UniSTS
HuRef	1	144,378,539 - 144,378,663	UniSTS

TNFSF4_270

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	173,152,833 - 173,153,732	UniSTS	GRCh37
Build 36	1	171,419,456 - 171,420,355	RGD	NCBI36
Celera	1	146,262,295 - 146,263,194	RGD
HuRef	1	144,377,571 - 144,378,470	UniSTS

SHGC-12820

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	173,155,044 - 173,155,372	UniSTS	GRCh37
Build 36	1	171,421,667 - 171,421,995	RGD	NCBI36
Celera	1	146,264,506 - 146,264,834	RGD
Cytogenetic Map	1	q25	UniSTS
HuRef	1	144,379,782 - 144,380,110	UniSTS
Stanford-G3 RH Map	1	6790.0	UniSTS
Whitehead-YAC Contig Map	1		UniSTS
GeneMap99-G3 RH Map	1	6746.0	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system
1203	2418	2787	2242	4942	1721	2339	4	621	1945	463	2267	7260	6444	52	3709	842	1730	1608	168


RefSeq Transcripts	NG_011477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001297562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_003326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011509964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017002228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017002229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017002230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047429896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047429902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047429908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054338600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054338601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054338602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001737393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001737394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001737395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002957543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002957545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB007839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB042986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB042988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK297932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL022310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL360002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL645568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC041663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ007105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR542033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D90224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF455079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF455081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF455092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF455105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	LN874319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	R45433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X79929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000281834 ⟹ ENSP00000281834

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,183,731 - 173,207,331 (-)	Ensembl

Ensembl Acc Id:

ENST00000367718 ⟹ ENSP00000356691

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,183,734 - 173,205,558 (-)	Ensembl

Ensembl Acc Id:

ENST00000488053

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,188,464 - 173,205,724 (-)	Ensembl

Ensembl Acc Id:

ENST00000714429 ⟹ ENSP00000519698

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,168,727 - 173,476,991 (-)	Ensembl

Ensembl Acc Id:

ENST00000714430 ⟹ ENSP00000519699

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,183,797 - 173,477,036 (-)	Ensembl

Ensembl Acc Id:

ENST00000714452

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,162,645 - 173,477,583 (-)	Ensembl

Ensembl Acc Id:

ENST00000714453

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,172,872 - 173,190,686 (-)	Ensembl

Ensembl Acc Id:

ENST00000714469

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,172,055 - 173,476,985 (-)	Ensembl

Ensembl Acc Id:

ENST00000714470 ⟹ ENSP00000519727

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,183,804 - 173,476,998 (-)	Ensembl

Ensembl Acc Id:

ENST00000714471 ⟹ ENSP00000519728

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	173,183,814 - 173,477,148 (-)	Ensembl

RefSeq Acc Id:

NM_001297562 ⟹ NP_001284491

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,183,731 - 173,205,532 (-)	NCBI
CHM1_1	1	174,575,344 - 174,597,171 (-)	NCBI
T2T-CHM13v2.0	1	172,541,831 - 172,563,632 (-)	NCBI

Sequence:

show sequence

AAGGCTAACTGATTGCACAACGGCTCTGAGCAGGAGAGAGCAAAAGGTGAACCACAGTTGTACAGCTTGCTGGTGGTTGGGGTCACATTGGACTATCAATATCCAGGAGATGTTGAGAAAAAGAGGGG
ATCCTTTCCAACAAGTCATCCAGCAACTCTGGGACAGAAGGAAAGCTGTGGGAAGAAAAGCAGGGTGCTGGTTTCTAGGACACTAAACCTCATGGTATCACATCGGTATCCTCGAATTCAAAGTATCA
AAGTACAATTTACCGAATATAAGAAGGAGAAAGGTTTCATCCTCACTTCCCAAAAGGAGGATGAAATCATGAAGGTGCAGAACAACTCAGTCATCATCAACTGTGATGGGTTTTATCTCATCTCCCTG
AAGGGCTACTTCTCCCAGGAAGTCAACATTAGCCTTCATTACCAGAAGGATGAGGAGCCCCTCTTCCAACTGAAGAAGGTCAGGTCTGTCAACTCCTTGATGGTGGCCTCTCTGACTTACAAAGACAA
AGTCTACTTGAATGTGACCACTGACAATACCTCCCTGGATGACTTCCATGTGAATGGCGGAGAACTGATTCTTATCCATCAAAATCCTGGTGAATTCTGTGTCCTTTGAGGGGCTGATGGCAATATCT
AAAACCAGGCACCAGCATGAACACCAAGCTGGGGGTGGACAGGGCATGGATTCTTCATTGCAAGTGAAGGAGCCTCCCAGCTCAGCCACGTGGGATGTGACAAGAAGCAGATCCTGGCCCTCCCGCCC
CCACCCCTCAGGGATATTTAAAACTTATTTTATATACCAGTTAATCTTATTTATCCTTATATTTTCTAAATTGCCTAGCCGTCACACCCCAAGATTGCCTTGAGCCTACTAGGCACCTTTGTGAGAAA
GAAAAAATAGATGCCTCTTCTTCAAGATGCATTGTTTCTATTGGTCAGGCAATTGTCATAATAAACTTATGTCATTGAAAACGGTACCTGACTACCATTTGCTGGAAATTTGACATGTGTGTGGCATT
ATCAAAATGAAGAGGAGCAAGGAGTGAAGGAGTGGGGTTATGAATCTGCCAAAGGTGGTATGAACCAACCCCTGGAAGCCAAAGCGGCCTCTCCAAGGTTAAATTGATTGCAGTTTGCATATTGCCTA
AATTTAAACTTTCTCATTTGGTGGGGGTTCAAAAGAAGAATCAGCTTGTGAAAAATCAGGACTTGAAGAGAGCCGTCTAAGAAATACCACGTGCTTTTTTTCTTTACCATTTTGCTTTCCCAGCCTCC
AAACATAGTTAATAGAAATTTCCCTTCAAAGAACTGTCTGGGGATGTGATGCTTTGAAAAATCTAATCAGTGACTTAAGAGAGATTTTCTTGTATACAGGGAGAGTGAGATAACTTATTGTGAAGGGT
TAGCTTTACTGTACAGGATAGCAGGGAACTGGACATCTCAGGGTAAAAGTCAGTACGGATTTTAATAGCCTGGGGAGGAAAACACATTCTTTGCCACAGACAGGCAAAGCAACACATGCTCATCCTCC
TGCCTATGCTGAGATACGCACTCAGCTCCATGTCTTGTACACACAGAAACATTGCTGGTTTCAAGAAATGAGGTGATCCTATTATCAAATTCAATCTGATGTCAAATAGCACTAAGAAGTTATTGTGC
CTTATGAAAAATAATGATCTCTGTCTAGAAATACCATAGACCATATATAGTCTCACATTGATAATTGAAACTAGAAGGGTCTATAATCAGCCTATGCCAGGGCTTCAATGGAATAGTATCCCCTTATG
TTTAGTTGAAATGTCCCCTTAACTTGATATAATGTGTTATGCTTATGGCGCTGTGGACAATCTGATTTTTCATGTCAACTTTCCAGATGATTTGTAACTTCTCTGTGCCAAACCTTTTATAAACATAA
ATTTTTGAGATATGTATTTTAAAATTGTAGCACATGTTTCCCTGACATTTTCAATAGAGGATACAACATCACAGAATCTTTCTGGATGATTCTGTGTTATCAAGGAATTGTACTGTGCTACAATTATC
TCTAGAATCTCCAGAAAGGTGGAGGGCTGTTCGCCCTTACACTAAATGGTCTCAGTTGGATTTTTTTTTCCTGTTTTCTATTTCCTCTTAAGTACACCTTCAACTATATTCCCATCCCTCTATTTTAA
TCTGTTATGAAGGAAGGTAAATAAAAATGCTAAATAGAAGAAATTGTAGGTAAGGTAAGAGGAATCAAGTTCTGAGTGGCTGCCAAGGCACTCACAGAATCATAATCATGGCTAAATATTTATGGAGG
GCCTACTGTGGACCAGGCACTGGGCTAAATACTTACATTTACAAGAATCATTCTGAGACAGATATTCAATGATATCTGGCTTCACTACTCAGAAGATTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGT
GTATTTCACTTTTTGTTATTGACCATGTTCTGCAAAATTGCAGTTACTCAGTGAGTGATATCCGAAAAAGTAAACGTTTATGACTATAGGTAATATTTAAGAAAATGCATGGTTCATTTTTAAGTTTG
GAATTTTTATCTATATTTCTCACAGATGTGCAGTGCACATGCAGGCCTAAGTATATGTTGTGTGTGTTGTTTGTCTTTGATGTCATGGTCCCCTCTCTTAGGTGCTCACTCGCTTTGGGTGCACCTGG
CCTGCTCTTCCCATGTTGGCCTCTGCAACCACACAGGGATATTTCTGCTATGCACCAGCCTCACTCCACCTTCCTTCCATCAAAAATATGTGTGTGTGTCTCAGTCCCTGTAAGTCATGTCCTTCACA
GGGAGAATTAACCCTTCGATATACATGGCAGAGTTTTGTGGGAAAAGAATTGAATGAAAAGTCAGGAGATCAGAATTTTAAATTTGACTTAGCCACTAACTAGCCATGTAACCTTGGGAAAGTCATTT
CCCATTTCTGGGTCTTGCTTTTCTTTCTGTTAAATGAGAGGAATGTTAAATATCTAACAGTTTAGAATCTTATGCTTACAGTGTTATCTGTGAATGCACATATTAAATGTCTATGTTCTTGTTGCTAT
GAGTCAAGGAGTGTAACCTTCTCCTTTACTATGTTGAATGTATTTTTTTCTGGACAAGCTTACATCTTCCTCAGCCATCTTTGTGAGTCCTTCAAGAGCAGTTATCAATTGTTAGTTAGATATTTTCT
ATTTAGAGAATGCTTAAGGGATTCCAATCCCGATCCAAATCATAATTTGTTCTTAAGTATACTGGGCAGGTCCCCTATTTTAAGTCATAATTTTGTATTTAGTGCTTTCCTGGCTCTCAGAGAGTATT
AATATTGATATTAATAATATAGTTAATAGTAATATTGCTATTTACATGGAAACAAATAAAAGATCTCAGAATTCACTA

hide sequence

RefSeq Acc Id:

NM_003326 ⟹ NP_003317

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,183,731 - 173,207,331 (-)	NCBI
GRCh37	1	173,152,870 - 173,176,471 (-)	ENTREZGENE
Build 36	1	171,419,493 - 171,443,094 (-)	NCBI Archive
HuRef	1	144,377,608 - 144,401,209 (-)	ENTREZGENE
CHM1_1	1	174,575,344 - 174,598,926 (-)	NCBI
T2T-CHM13v2.0	1	172,541,831 - 172,565,431 (-)	NCBI

Sequence:

show sequence

CAATCGCCTTTTATCTCTGGCCCTGGGACCTTTGCCTATTTTCTGATTGATAGGCTTTGTTTTGTCTTTACCTCCTTCTTTCTGGGGAAAACTTCAGTTTTATCGCACGTTCCCCTTTTCCATATCTT
CATCTTCCCTCTACCCAGATTGTGAAGATGGAAAGGGTCCAACCCCTGGAAGAGAATGTGGGAAATGCAGCCAGGCCAAGATTCGAGAGGAACAAGCTATTGCTGGTGGCCTCTGTAATTCAGGGACT
GGGGCTGCTCCTGTGCTTCACCTACATCTGCCTGCACTTCTCTGCTCTTCAGGTATCACATCGGTATCCTCGAATTCAAAGTATCAAAGTACAATTTACCGAATATAAGAAGGAGAAAGGTTTCATCC
TCACTTCCCAAAAGGAGGATGAAATCATGAAGGTGCAGAACAACTCAGTCATCATCAACTGTGATGGGTTTTATCTCATCTCCCTGAAGGGCTACTTCTCCCAGGAAGTCAACATTAGCCTTCATTAC
CAGAAGGATGAGGAGCCCCTCTTCCAACTGAAGAAGGTCAGGTCTGTCAACTCCTTGATGGTGGCCTCTCTGACTTACAAAGACAAAGTCTACTTGAATGTGACCACTGACAATACCTCCCTGGATGA
CTTCCATGTGAATGGCGGAGAACTGATTCTTATCCATCAAAATCCTGGTGAATTCTGTGTCCTTTGAGGGGCTGATGGCAATATCTAAAACCAGGCACCAGCATGAACACCAAGCTGGGGGTGGACAG
GGCATGGATTCTTCATTGCAAGTGAAGGAGCCTCCCAGCTCAGCCACGTGGGATGTGACAAGAAGCAGATCCTGGCCCTCCCGCCCCCACCCCTCAGGGATATTTAAAACTTATTTTATATACCAGTT
AATCTTATTTATCCTTATATTTTCTAAATTGCCTAGCCGTCACACCCCAAGATTGCCTTGAGCCTACTAGGCACCTTTGTGAGAAAGAAAAAATAGATGCCTCTTCTTCAAGATGCATTGTTTCTATT
GGTCAGGCAATTGTCATAATAAACTTATGTCATTGAAAACGGTACCTGACTACCATTTGCTGGAAATTTGACATGTGTGTGGCATTATCAAAATGAAGAGGAGCAAGGAGTGAAGGAGTGGGGTTATG
AATCTGCCAAAGGTGGTATGAACCAACCCCTGGAAGCCAAAGCGGCCTCTCCAAGGTTAAATTGATTGCAGTTTGCATATTGCCTAAATTTAAACTTTCTCATTTGGTGGGGGTTCAAAAGAAGAATC
AGCTTGTGAAAAATCAGGACTTGAAGAGAGCCGTCTAAGAAATACCACGTGCTTTTTTTCTTTACCATTTTGCTTTCCCAGCCTCCAAACATAGTTAATAGAAATTTCCCTTCAAAGAACTGTCTGGG
GATGTGATGCTTTGAAAAATCTAATCAGTGACTTAAGAGAGATTTTCTTGTATACAGGGAGAGTGAGATAACTTATTGTGAAGGGTTAGCTTTACTGTACAGGATAGCAGGGAACTGGACATCTCAGG
GTAAAAGTCAGTACGGATTTTAATAGCCTGGGGAGGAAAACACATTCTTTGCCACAGACAGGCAAAGCAACACATGCTCATCCTCCTGCCTATGCTGAGATACGCACTCAGCTCCATGTCTTGTACAC
ACAGAAACATTGCTGGTTTCAAGAAATGAGGTGATCCTATTATCAAATTCAATCTGATGTCAAATAGCACTAAGAAGTTATTGTGCCTTATGAAAAATAATGATCTCTGTCTAGAAATACCATAGACC
ATATATAGTCTCACATTGATAATTGAAACTAGAAGGGTCTATAATCAGCCTATGCCAGGGCTTCAATGGAATAGTATCCCCTTATGTTTAGTTGAAATGTCCCCTTAACTTGATATAATGTGTTATGC
TTATGGCGCTGTGGACAATCTGATTTTTCATGTCAACTTTCCAGATGATTTGTAACTTCTCTGTGCCAAACCTTTTATAAACATAAATTTTTGAGATATGTATTTTAAAATTGTAGCACATGTTTCCC
TGACATTTTCAATAGAGGATACAACATCACAGAATCTTTCTGGATGATTCTGTGTTATCAAGGAATTGTACTGTGCTACAATTATCTCTAGAATCTCCAGAAAGGTGGAGGGCTGTTCGCCCTTACAC
TAAATGGTCTCAGTTGGATTTTTTTTTCCTGTTTTCTATTTCCTCTTAAGTACACCTTCAACTATATTCCCATCCCTCTATTTTAATCTGTTATGAAGGAAGGTAAATAAAAATGCTAAATAGAAGAA
ATTGTAGGTAAGGTAAGAGGAATCAAGTTCTGAGTGGCTGCCAAGGCACTCACAGAATCATAATCATGGCTAAATATTTATGGAGGGCCTACTGTGGACCAGGCACTGGGCTAAATACTTACATTTAC
AAGAATCATTCTGAGACAGATATTCAATGATATCTGGCTTCACTACTCAGAAGATTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTATTTCACTTTTTGTTATTGACCATGTTCTGCAAAATTGCA
GTTACTCAGTGAGTGATATCCGAAAAAGTAAACGTTTATGACTATAGGTAATATTTAAGAAAATGCATGGTTCATTTTTAAGTTTGGAATTTTTATCTATATTTCTCACAGATGTGCAGTGCACATGC
AGGCCTAAGTATATGTTGTGTGTGTTGTTTGTCTTTGATGTCATGGTCCCCTCTCTTAGGTGCTCACTCGCTTTGGGTGCACCTGGCCTGCTCTTCCCATGTTGGCCTCTGCAACCACACAGGGATAT
TTCTGCTATGCACCAGCCTCACTCCACCTTCCTTCCATCAAAAATATGTGTGTGTGTCTCAGTCCCTGTAAGTCATGTCCTTCACAGGGAGAATTAACCCTTCGATATACATGGCAGAGTTTTGTGGG
AAAAGAATTGAATGAAAAGTCAGGAGATCAGAATTTTAAATTTGACTTAGCCACTAACTAGCCATGTAACCTTGGGAAAGTCATTTCCCATTTCTGGGTCTTGCTTTTCTTTCTGTTAAATGAGAGGA
ATGTTAAATATCTAACAGTTTAGAATCTTATGCTTACAGTGTTATCTGTGAATGCACATATTAAATGTCTATGTTCTTGTTGCTATGAGTCAAGGAGTGTAACCTTCTCCTTTACTATGTTGAATGTA
TTTTTTTCTGGACAAGCTTACATCTTCCTCAGCCATCTTTGTGAGTCCTTCAAGAGCAGTTATCAATTGTTAGTTAGATATTTTCTATTTAGAGAATGCTTAAGGGATTCCAATCCCGATCCAAATCA
TAATTTGTTCTTAAGTATACTGGGCAGGTCCCCTATTTTAAGTCATAATTTTGTATTTAGTGCTTTCCTGGCTCTCAGAGAGTATTAATATTGATATTAATAATATAGTTAATAGTAATATTGCTATT
TACATGGAAACAAATAAAAGATCTCAGAATTCACTA

hide sequence

RefSeq Acc Id:

XM_011509964 ⟹ XP_011508266

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,183,731 - 173,208,900 (-)	NCBI

Sequence:

show sequence

CAGCTTATTTCTAGTTTCCAATAGTATTTATGGCTTTTTTTTTTTTTGCTGTGACTCTTAGTCA
TTTTTTGAAAATTGACGAGTAAATAGTTACTGATTTTAATACTCTTTTATGAAGAACTATTACACAAGAATTGGGCTTTACACACTGATTTTTCCTTCAGCTTTTTTCTCCACACCCTGTATGTAACA
CAAGCTTTGTTCAAGGGAATAACTATGACAAATATGTTTGGATACAATTTGATTTCTAGTTTTGGCTTGGAGTCTATGATATTGTGCCTTAGTTACCTTATCTTTCAGATAAAACTTAAATTTCTCAA
CACCAGTATGTTCTCCTAATGCAAGGCATAATTATTGTAGTGAAGGTATTAATTCATATTTTAATTGATTAATACTGTAGTCATAAATGTACTTTACATTTCCCACAAACTTTCTCTTTTAAGTATGC
CTCATTTCCATTTTTTCTGTGAAGTGGTATAACAACTCATACTGTCAATATCCAAAATATTTCTCCCTCCTTTCTTTACATATCTGCTGGGTGCCTCATGGGGAGCTGAGAGAGACATACTTGGCCAC
AAAGAGAGACAATTCCGTCTTAAACAGCTTTTCCCCAGCATCCTTATGTTGTCCAGTACAGTGCCAGGCTCATGTGATGTACTCAGTAAATATTTGCCCATTTGAACTTTACATTATAAGTAATTTTA
TCATTTATTTCATTTCATTGTTTATTTTAGTGGTAAAGGGTACCTGGTGTCTATTGATAGAATACTCTTACTTTCCAAGTTCTGAGGCCAGCCACGACCTCAAAGAAAGAAATAATCTTCAAAGCTTA
TTTACATCTATTCATTTGTTCATTCATGGAAAAATTATGTACGGGAAAAATGTGAAGTGGAAGGAAAGGAGACAAGGATACCCTTCTGCTTCTTTTCTGATTGTGAAGATGGAAAGGGTCCAACCCCT
GGAAGAGAATGTGGGAAATGCAGCCAGGCCAAGATTCGAGAGGAACAAGCTATTGCTGGTGGCCTCTGTAATTCAGGGACTGGGGCTGCTCCTGTGCTTCACCTACATCTGCCTGCACTTCTCTGCTC
TTCAGGTATCACATCGGTATCCTCGAATTCAAAGTATCAAAGTACAATTTACCGAATATAAGAAGGAGAAAGGTTTCATCCTCACTTCCCAAAAGGAGGATGAAATCATGAAGGTGCAGAACAACTCA
GTCATCATCAACTGTGATGGGTTTTATCTCATCTCCCTGAAGGGCTACTTCTCCCAGGAAGTCAACATTAGCCTTCATTACCAGAAGGATGAGGAGCCCCTCTTCCAACTGAAGAAGGTCAGGTCTGT
CAACTCCTTGATGGTGGCCTCTCTGACTTACAAAGACAAAGTCTACTTGAATGTGACCACTGACAATACCTCCCTGGATGACTTCCATGTGAATGGCGGAGAACTGATTCTTATCCATCAAAATCCTG
GTGAATTCTGTGTCCTTTGAGGGGCTGATGGCAATATCTAAAACCAGGCACCAGCATGAACACCAAGCTGGGGGTGGACAGGGCATGGATTCTTCATTGCAAGTGAAGGAGCCTCCCAGCTCAGCCAC
GTGGGATGTGACAAGAAGCAGATCCTGGCCCTCCCGCCCCCACCCCTCAGGGATATTTAAAACTTATTTTATATACCAGTTAATCTTATTTATCCTTATATTTTCTAAATTGCCTAGCCGTCACACCC
CAAGATTGCCTTGAGCCTACTAGGCACCTTTGTGAGAAAGAAAAAATAGATGCCTCTTCTTCAAGATGCATTGTTTCTATTGGTCAGGCAATTGTCATAATAAACTTATGTCATTGAAAACGGTACCT
GACTACCATTTGCTGGAAATTTGACATGTGTGTGGCATTATCAAAATGAAGAGGAGCAAGGAGTGAAGGAGTGGGGTTATGAATCTGCCAAAGGTGGTATGAACCAACCCCTGGAAGCCAAAGCGGCC
TCTCCAAGGTTAAATTGATTGCAGTTTGCATATTGCCTAAATTTAAACTTTCTCATTTGGTGGGGGTTCAAAAGAAGAATCAGCTTGTGAAAAATCAGGACTTGAAGAGAGCCGTCTAAGAAATACCA
CGTGCTTTTTTTCTTTACCATTTTGCTTTCCCAGCCTCCAAACATAGTTAATAGAAATTTCCCTTCAAAGAACTGTCTGGGGATGTGATGCTTTGAAAAATCTAATCAGTGACTTAAGAGAGATTTTC
TTGTATACAGGGAGAGTGAGATAACTTATTGTGAAGGGTTAGCTTTACTGTACAGGATAGCAGGGAACTGGACATCTCAGGGTAAAAGTCAGTACGGATTTTAATAGCCTGGGGAGGAAAACACATTC
TTTGCCACAGACAGGCAAAGCAACACATGCTCATCCTCCTGCCTATGCTGAGATACGCACTCAGCTCCATGTCTTGTACACACAGAAACATTGCTGGTTTCAAGAAATGAGGTGATCCTATTATCAAA
TTCAATCTGATGTCAAATAGCACTAAGAAGTTATTGTGCCTTATGAAAAATAATGATCTCTGTCTAGAAATACCATAGACCATATATAGTCTCACATTGATAATTGAAACTAGAAGGGTCTATAATCA
GCCTATGCCAGGGCTTCAATGGAATAGTATCCCCTTATGTTTAGTTGAAATGTCCCCTTAACTTGATATAATGTGTTATGCTTATGGCGCTGTGGACAATCTGATTTTTCATGTCAACTTTCCAGATG
ATTTGTAACTTCTCTGTGCCAAACCTTTTATAAACATAAATTTTTGAGATATGTATTTTAAAATTGTAGCACATGTTTCCCTGACATTTTCAATAGAGGATACAACATCACAGAATCTTTCTGGATGA
TTCTGTGTTATCAAGGAATTGTACTGTGCTACAATTATCTCTAGAATCTCCAGAAAGGTGGAGGGCTGTTCGCCCTTACACTAAATGGTCTCAGTTGGATTTTTTTTTCCTGTTTTCTATTTCCTCTT
AAGTACACCTTCAACTATATTCCCATCCCTCTATTTTAATCTGTTATGAAGGAAGGTAAATAAAAATGCTAAATAGAAGAAATTGTAGGTAAGGTAAGAGGAATCAAGTTCTGAGTGGCTGCCAAGGC
ACTCACAGAATCATAATCATGGCTAAATATTTATGGAGGGCCTACTGTGGACCAGGCACTGGGCTAAATACTTACATTTACAAGAATCATTCTGAGACAGATATTCAATGATATCTGGCTTCACTACT
CAGAAGATTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTATTTCACTTTTTGTTATTGACCATGTTCTGCAAAATTGCAGTTACTCAGTGAGTGATATCCGAAAAAGTAAACGTTTATGACTATAG
GTAATATTTAAGAAAATGCATGGTTCATTTTTAAGTTTGGAATTTTTATCTATATTTCTCACAGATGTGCAGTGCACATGCAGGCCTAAGTATATGTTGTGTGTGTTGTTTGTCTTTGATGTCATGGT
CCCCTCTCTTAGGTGCTCACTCGCTTTGGGTGCACCTGGCCTGCTCTTCCCATGTTGGCCTCTGCAACCACACAGGGATATTTCTGCTATGCACCAGCCTCACTCCACCTTCCTTCCATCAAAAATAT
GTGTGTGTGTCTCAGTCCCTGTAAGTCATGTCCTTCACAGGGAGAATTAACCCTTCGATATACATGGCAGAGTTTTGTGGGAAAAGAATTGAATGAAAAGTCAGGAGATCAGAATTTTAAATTTGACT
TAGCCACTAACTAGCCATGTAACCTTGGGAAAGTCATTTCCCATTTCTGGGTCTTGCTTTTCTTTCTGTTAAATGAGAGGAATGTTAAATATCTAACAGTTTAGAATCTTATGCTTACAGTGTTATCT
GTGAATGCACATATTAAATGTCTATGTTCTTGTTGCTATGAGTCAAGGAGTGTAACCTTCTCCTTTACTATGTTGAATGTATTTTTTTCTGGACAAGCTTACATCTTCCTCAGCCATCTTTGTGAGTC
CTTCAAGAGCAGTTATCAATTGTTAGTTAGATATTTTCTATTTAGAGAATGCTTAAGGGATTCCAATCCCGATCCAAATCATAATTTGTTCTTAAGTATACTGGGCAGGTCCCCTATTTTAAGTCATA
ATTTTGTATTTAGTGCTTTCCTGGCTCTCAGAGAGTATTAATATTGATATTAATAATATAGTTAATAGTAATATTGCTATTTACATGGAAACAAATAAAAGATCTCAGAATTCACTA

hide sequence

RefSeq Acc Id:

XM_017002228 ⟹ XP_016857717

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,183,731 - 173,207,010 (-)	NCBI

Sequence:

show sequence

GGGCGCTGTTTTCCCACCAGCTCATGCTGATGGCAGCTGCAACAGCTGCAAACAGTCGCTTGGAAATAATCTTATGCCAAAAGTGTTGAGTTTTTTTTCCCTCTCCCCACAGCAATCGTAAAGTGTGG
TTAAACGCCCTTCTGTCTCTCCTTTCCTTCCTTCTTTTCAGCAGTGGCAGTGGTAGGGCAGAGTGGAGGTAGGGCAGAGGCACAGCTTCTAGATCTTTTTCTTTTTCTTTGCAATGCAAGATTCCTTG
TATCCCTTTATAAGCTGTCACTTTGAAGCTTTGAGTCACTGATATACCTGGTCTACCCATTGTGATAGTAATGTGTTTGATCAGGCAATTAATATTAAAAGGAAATAGGAAAGAGACCAGTTCCACTT
TCCCATAATATTCATATACCCTATAGACCTGCAAGGTGATTTTCTTTGTAAAGAATGCTGAAGGTATCAATATTAATAGCGGAGCAATGTGTGCGTGCATGTGTGTGTGCCTATGTGCTCACTCATTC
ACCCCAATGATTTAATCAGATATTGTTTCTCACAATCTATCTCTTCCAGTCATAATTTAAAGACATCATTTCACCTTTTCCCTACCTTATTAAATACATCATGTAGTAGGAGATTATCCTTCTAGTAT
TTTCCCCATATAGTTAAAATATTTCCATTTTTCTTTCACTTTATTCTTGTTCCACACTTCTCTCTTTTGCATTATTTTTTCTTATTCAGTAGTTCAGATATACAAACATTATTAGGTATTTAAGGATG
TTCTTCACTGCAGAAGATGCCACTGGAGAAAAATAAATCTATACTCTCTTCGTGTTCCTTTGTTGAGCTAGTCTGATAATCTTGTTTTCTAGGTGGTTGCTTTGGGTTAGAAATGTTTCTCCCTGATA
AAGTTCAGGTAATACAAACTGATTTCTGATGGTCTTGTCTGAGATTAAGCACCTCCAATGAAACCAGAATGAGATGAGCAGTCTTGGCAAATGCCTGGGCTTGTTTCTGCCTACAGGAAATAGGGTTT
TCAGTGCATGGAGGCTGGTAAGAGTGTGTGTGGTTATGATCACTGTACCACAGACAGTGCTTGTGTCTCCAAATTCCAGAAGTGTAGCTAGTGTCATGCTCAGGTCTGCAGAACAGTGAGCACAACAA
CACATTGATCCTCTCCTCATCACACCACACTCTTATGTCTTCTCGCAGAACTCTTTGGGTGAAATTAAAGTAGGCGACTCGGGGAGAGGGTGTGGGGGAAGAGTAAGGTGTCCATGGCAGGATGCCCA
AGACATCGACCGGATGCCCAAGACATCAACCGGAATTAGGCTCTTTTGAGAAGAAAACAAAGAGAGTAACCAAATATAGAACAGCTGAGTGCATTCACCAGTCTGGGAGCCCTGAGAGTGCTTTTTCT
AACAACCACAGTGTTACATATTTCCTTACACCATGGGATGATAAAACACAGGACACATGGCTCCATTCAAGGCTAACTGATTGCACAACGGCTCTGAGCAGGAGAGAGCAAAAGGTATCACATCGGTA
TCCTCGAATTCAAAGTATCAAAGTACAATTTACCGAATATAAGAAGGAGAAAGGTTTCATCCTCACTTCCCAAAAGGAGGATGAAATCATGAAGGTGCAGAACAACTCAGTCATCATCAACTGTGATG
GGTTTTATCTCATCTCCCTGAAGGGCTACTTCTCCCAGGAAGTCAACATTAGCCTTCATTACCAGAAGGATGAGGAGCCCCTCTTCCAACTGAAGAAGGTCAGGTCTGTCAACTCCTTGATGGTGGCC
TCTCTGACTTACAAAGACAAAGTCTACTTGAATGTGACCACTGACAATACCTCCCTGGATGACTTCCATGTGAATGGCGGAGAACTGATTCTTATCCATCAAAATCCTGGTGAATTCTGTGTCCTTTG
AGGGGCTGATGGCAATATCTAAAACCAGGCACCAGCATGAACACCAAGCTGGGGGTGGACAGGGCATGGATTCTTCATTGCAAGTGAAGGAGCCTCCCAGCTCAGCCACGTGGGATGTGACAAGAAGC
AGATCCTGGCCCTCCCGCCCCCACCCCTCAGGGATATTTAAAACTTATTTTATATACCAGTTAATCTTATTTATCCTTATATTTTCTAAATTGCCTAGCCGTCACACCCCAAGATTGCCTTGAGCCTA
CTAGGCACCTTTGTGAGAAAGAAAAAATAGATGCCTCTTCTTCAAGATGCATTGTTTCTATTGGTCAGGCAATTGTCATAATAAACTTATGTCATTGAAAACGGTACCTGACTACCATTTGCTGGAAA
TTTGACATGTGTGTGGCATTATCAAAATGAAGAGGAGCAAGGAGTGAAGGAGTGGGGTTATGAATCTGCCAAAGGTGGTATGAACCAACCCCTGGAAGCCAAAGCGGCCTCTCCAAGGTTAAATTGAT
TGCAGTTTGCATATTGCCTAAATTTAAACTTTCTCATTTGGTGGGGGTTCAAAAGAAGAATCAGCTTGTGAAAAATCAGGACTTGAAGAGAGCCGTCTAAGAAATACCACGTGCTTTTTTTCTTTACC
ATTTTGCTTTCCCAGCCTCCAAACATAGTTAATAGAAATTTCCCTTCAAAGAACTGTCTGGGGATGTGATGCTTTGAAAAATCTAATCAGTGACTTAAGAGAGATTTTCTTGTATACAGGGAGAGTGA
GATAACTTATTGTGAAGGGTTAGCTTTACTGTACAGGATAGCAGGGAACTGGACATCTCAGGGTAAAAGTCAGTACGGATTTTAATAGCCTGGGGAGGAAAACACATTCTTTGCCACAGACAGGCAAA
GCAACACATGCTCATCCTCCTGCCTATGCTGAGATACGCACTCAGCTCCATGTCTTGTACACACAGAAACATTGCTGGTTTCAAGAAATGAGGTGATCCTATTATCAAATTCAATCTGATGTCAAATA
GCACTAAGAAGTTATTGTGCCTTATGAAAAATAATGATCTCTGTCTAGAAATACCATAGACCATATATAGTCTCACATTGATAATTGAAACTAGAAGGGTCTATAATCAGCCTATGCCAGGGCTTCAA
TGGAATAGTATCCCCTTATGTTTAGTTGAAATGTCCCCTTAACTTGATATAATGTGTTATGCTTATGGCGCTGTGGACAATCTGATTTTTCATGTCAACTTTCCAGATGATTTGTAACTTCTCTGTGC
CAAACCTTTTATAAACATAAATTTTTGAGATATGTATTTTAAAATTGTAGCACATGTTTCCCTGACATTTTCAATAGAGGATACAACATCACAGAATCTTTCTGGATGATTCTGTGTTATCAAGGAAT
TGTACTGTGCTACAATTATCTCTAGAATCTCCAGAAAGGTGGAGGGCTGTTCGCCCTTACACTAAATGGTCTCAGTTGGATTTTTTTTTCCTGTTTTCTATTTCCTCTTAAGTACACCTTCAACTATA
TTCCCATCCCTCTATTTTAATCTGTTATGAAGGAAGGTAAATAAAAATGCTAAATAGAAGAAATTGTAGGTAAGGTAAGAGGAATCAAGTTCTGAGTGGCTGCCAAGGCACTCACAGAATCATAATCA
TGGCTAAATATTTATGGAGGGCCTACTGTGGACCAGGCACTGGGCTAAATACTTACATTTACAAGAATCATTCTGAGACAGATATTCAATGATATCTGGCTTCACTACTCAGAAGATTGTGTGTGTGT
TTGTGTGTGTGTGTGTGTGTGTATTTCACTTTTTGTTATTGACCATGTTCTGCAAAATTGCAGTTACTCAGTGAGTGATATCCGAAAAAGTAAACGTTTATGACTATAGGTAATATTTAAGAAAATGC
ATGGTTCATTTTTAAGTTTGGAATTTTTATCTATATTTCTCACAGATGTGCAGTGCACATGCAGGCCTAAGTATATGTTGTGTGTGTTGTTTGTCTTTGATGTCATGGTCCCCTCTCTTAGGTGCTCA
CTCGCTTTGGGTGCACCTGGCCTGCTCTTCCCATGTTGGCCTCTGCAACCACACAGGGATATTTCTGCTATGCACCAGCCTCACTCCACCTTCCTTCCATCAAAAATATGTGTGTGTGTCTCAGTCCC
TGTAAGTCATGTCCTTCACAGGGAGAATTAACCCTTCGATATACATGGCAGAGTTTTGTGGGAAAAGAATTGAATGAAAAGTCAGGAGATCAGAATTTTAAATTTGACTTAGCCACTAACTAGCCATG
TAACCTTGGGAAAGTCATTTCCCATTTCTGGGTCTTGCTTTTCTTTCTGTTAAATGAGAGGAATGTTAAATATCTAACAGTTTAGAATCTTATGCTTACAGTGTTATCTGTGAATGCACATATTAAAT
GTCTATGTTCTTGTTGCTATGAGTCAAGGAGTGTAACCTTCTCCTTTACTATGTTGAATGTATTTTTTTCTGGACAAGCTTACATCTTCCTCAGCCATCTTTGTGAGTCCTTCAAGAGCAGTTATCAA
TTGTTAGTTAGATATTTTCTATTTAGAGAATGCTTAAGGGATTCCAATCCCGATCCAAATCATAATTTGTTCTTAAGTATACTGGGCAGGTCCCCTATTTTAAGTCATAATTTTGTATTTAGTGCTTT
CCTGGCTCTCAGAGAGTATTAATATTGATATTAATAATATAGTTAATAGTAATATTGCTATTTACATGGAAACAAATAAAAGATCTCAGAATTCACTACT

hide sequence

RefSeq Acc Id:

XM_047429896 ⟹ XP_047285852

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,183,731 - 173,450,733 (-)	NCBI

RefSeq Acc Id:

XM_047429902 ⟹ XP_047285858

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,183,731 - 173,410,012 (-)	NCBI

RefSeq Acc Id:

XM_047429908 ⟹ XP_047285864

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,172,870 - 173,207,017 (-)	NCBI

RefSeq Acc Id:

XM_054338600 ⟹ XP_054194575

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	172,541,831 - 172,567,000 (-)	NCBI

RefSeq Acc Id:

XM_054338601 ⟹ XP_054194576

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	172,541,831 - 172,565,110 (-)	NCBI

RefSeq Acc Id:

XM_054338602 ⟹ XP_054194577

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	172,541,831 - 172,768,144 (-)	NCBI


Protein RefSeqs	NP_001284491	(Get FASTA)	NCBI Sequence Viewer
	NP_003317	(Get FASTA)	NCBI Sequence Viewer
	XP_011508266	(Get FASTA)	NCBI Sequence Viewer
	XP_016857717	(Get FASTA)	NCBI Sequence Viewer
	XP_047285852	(Get FASTA)	NCBI Sequence Viewer
	XP_047285858	(Get FASTA)	NCBI Sequence Viewer
	XP_047285864	(Get FASTA)	NCBI Sequence Viewer
	XP_054194575	(Get FASTA)	NCBI Sequence Viewer
	XP_054194576	(Get FASTA)	NCBI Sequence Viewer
	XP_054194577	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH41663	(Get FASTA)	NCBI Sequence Viewer
	BAA14259	(Get FASTA)	NCBI Sequence Viewer
	BAA31196	(Get FASTA)	NCBI Sequence Viewer
	BAB18304	(Get FASTA)	NCBI Sequence Viewer
	BAG60249	(Get FASTA)	NCBI Sequence Viewer
	CAA56284	(Get FASTA)	NCBI Sequence Viewer
	CAG46830	(Get FASTA)	NCBI Sequence Viewer
	CTQ86084	(Get FASTA)	NCBI Sequence Viewer
	EAW90938	(Get FASTA)	NCBI Sequence Viewer
	EAW90939	(Get FASTA)	NCBI Sequence Viewer
	EAW90940	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000281834
	ENSP00000281834.3
	ENSP00000356691
	ENSP00000356691.1
	ENSP00000519699.1
	ENSP00000519727.1
	ENSP00000519728.1
GenBank Protein	P23510	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_003317 ⟸ NM_003326
- Peptide Label:	isoform 1
- UniProtKB:	Q8IV74 (UniProtKB/Swiss-Prot), Q5JZA5 (UniProtKB/Swiss-Prot), Q9HCN9 (UniProtKB/Swiss-Prot), P23510 (UniProtKB/Swiss-Prot), A0A024R937 (UniProtKB/TrEMBL), A0A0U5CJ97 (UniProtKB/TrEMBL), Q6FGS4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQ LKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL hide sequence

RefSeq Acc Id:	NP_001284491 ⟸ NM_001297562
- Peptide Label:	isoform 2
- UniProtKB:	P23510 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVN ISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL hide sequence

RefSeq Acc Id:

XP_011508266 ⟸ XM_011509964

- Peptide Label:

isoform X1

- Sequence:

show sequence

MYSVNICPFELYIISNFIIYFISLFILVVKGTWCLLIEYSYFPSSEASHDLKERNNLQSLFTSIHLFIHGKIMYGKNVKWKERRQGYPSASFLIVKMERVQPLEENVGNAARPRFERNKLLLVASVIQ
GLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSL
DDFHVNGGELILIHQNPGEFCVL

hide sequence

RefSeq Acc Id:

XP_016857717 ⟸ XM_017002228

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPKTSTGCPRHQPELGSFEKKTKRVTKYRTAECIHQSGSPESAFSNNHSVTYFLTPWDDKTQDT
WLHSRLTDCTTALSRREQKVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSL
DDFHVNGGELILIHQNPGEFCVL

hide sequence

Ensembl Acc Id:

ENSP00000281834 ⟸ ENST00000281834

Protein Domains

THD

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P23510-F1-model_v2	AlphaFold	P23510	1-183	view protein structure

RGD ID:

6787043

Promoter ID:

HG_KWN:6215

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, Jurkat, K562, Lymphoblastoid

Transcripts:

OTTHUMT00000098113, UC001GIV.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	1	171,441,329 - 171,441,829 (-)	MPROMDB

RGD ID:

6787044

Promoter ID:

HG_KWN:6216

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, Lymphoblastoid

Transcripts:

UC001GIW.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	1	171,442,919 - 171,443,419 (-)	MPROMDB

RGD ID:

6858140

Promoter ID:

EPDNEW_H2234

Type:

initiation region

Name:

TNFSF4_3

Description:

TNF superfamily member 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H2235 EPDNEW_H2236

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,205,532 - 173,205,592	EPDNEW

RGD ID:

6858142

Promoter ID:

EPDNEW_H2235

Type:

initiation region

Name:

TNFSF4_2

Description:

TNF superfamily member 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H2234 EPDNEW_H2236

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	173,207,330 - 173,207,390	EPDNEW

Database	Acc Id	Source(s)
COSMIC	TNFSF4	COSMIC
Ensembl Genes	ENSG00000117586	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000281834	ENTREZGENE
	ENST00000281834.4	UniProtKB/Swiss-Prot
	ENST00000367718	ENTREZGENE
	ENST00000367718.5	UniProtKB/Swiss-Prot
	ENST00000714430.1	UniProtKB/Swiss-Prot
	ENST00000714470.1	UniProtKB/Swiss-Prot
	ENST00000714471.1	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.120.40	UniProtKB/Swiss-Prot
GTEx	ENSG00000117586	GTEx
HGNC ID	HGNC:11934	ENTREZGENE
Human Proteome Map	TNFSF4	Human Proteome Map
InterPro	TNF_CS	UniProtKB/Swiss-Prot
	TNF_dom	UniProtKB/Swiss-Prot
	TNFSF4	UniProtKB/Swiss-Prot
	Tumour_necrosis_fac-like_dom	UniProtKB/Swiss-Prot
KEGG Report	hsa:7292	UniProtKB/Swiss-Prot
NCBI Gene	7292	ENTREZGENE
OMIM	603594	OMIM
PANTHER	PTHR17534	UniProtKB/Swiss-Prot
	TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 4	UniProtKB/Swiss-Prot
PharmGKB	PA36625	PharmGKB
PROSITE	THD_2	UniProtKB/Swiss-Prot
	TNF_1	UniProtKB/Swiss-Prot
SMART	TNF	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49842	UniProtKB/Swiss-Prot
UniProt	A0A024R937	ENTREZGENE, UniProtKB/TrEMBL
	A0A0U5CJ97	ENTREZGENE
	A0AAQ5BI34_HUMAN	UniProtKB/TrEMBL
	P23510	ENTREZGENE
	Q5JZA5	ENTREZGENE
	Q6FGS4	ENTREZGENE, UniProtKB/TrEMBL
	Q8IV74	ENTREZGENE
	Q9HCN9	ENTREZGENE
	TNFL4_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	Q5JZA5	UniProtKB/Swiss-Prot
	Q8IV74	UniProtKB/Swiss-Prot
	Q9HCN9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-07	TNFSF4	TNF superfamily member 4	TNFSF4	tumor necrosis factor superfamily member 4	Symbol and/or name change	5135510	APPROVED
2015-11-24	TNFSF4	tumor necrosis factor superfamily member 4	TNFSF4	tumor necrosis factor (ligand) superfamily, member 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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