Tnfrsf4 (tumor necrosis factor receptor superfamily, member 4) - Rat Genome Database

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Gene: Tnfrsf4 (tumor necrosis factor receptor superfamily, member 4) Mus musculus
Analyze
Symbol: Tnfrsf4
Name: tumor necrosis factor receptor superfamily, member 4
RGD ID: 737375
MGI Page MGI
Description: Enables tumor necrosis factor receptor activity. Involved in negative regulation of apoptotic process; positive regulation of B cell proliferation; and regulation of gene expression. Acts upstream of or within several processes, including cellular defense response; negative regulation of cytokine production; and tumor necrosis factor-mediated signaling pathway. Located in external side of plasma membrane. Human ortholog(s) of this gene implicated in immunodeficiency 16. Orthologous to human TNFRSF4 (TNF receptor superfamily member 4).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ACT3; ACT35; CD134; Ly-70; Ox4; Ox40; OX40 antigen; OX40L receptor; tax-transcriptionally activated glycoprotein 1; tumor necrosis factor receptor superfamily member 4; Txgp; Txgp1; TXGP1L
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,098,049 - 156,101,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,098,300 - 156,101,069 (+)EnsemblGRCm39 Ensembl
GRCm384156,013,595 - 156,016,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,013,843 - 156,016,612 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,387,804 - 155,390,698 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,857,495 - 154,860,389 (+)NCBIMGSCv36mm8
Celera4158,276,449 - 158,279,355 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.68NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal CD4-positive, alpha-beta T cell physiology  (IAGP)
abnormal enterocyte proliferation  (IAGP)
abnormal humoral immune response  (IAGP)
abnormal hypodermis fat layer morphology  (IAGP)
abnormal keratinocyte differentiation  (IAGP)
abnormal regulatory T cell number  (IAGP)
abnormal regulatory T cell physiology  (IAGP)
abnormal T cell activation  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal T cell physiology  (IAGP)
abnormal T-helper 1 cell differentiation  (IAGP)
abnormal T-helper 2 cell differentiation  (IAGP)
abnormal T-helper 2 physiology  (IAGP)
cachexia  (IAGP)
colitis  (IAGP)
decreased germinal center B cell number  (IAGP)
decreased IgG1 level  (IAGP)
decreased inflammatory response  (IAGP)
decreased interferon-gamma secretion  (IAGP)
decreased interleukin-13 secretion  (IAGP)
decreased interleukin-4 secretion  (IAGP)
decreased interleukin-5 secretion  (IAGP)
decreased regulatory T cell number  (IAGP)
decreased spleen germinal center number  (IAGP)
decreased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
decreased susceptibility to type I hypersensitivity reaction  (IAGP)
decreased T cell proliferation  (IAGP)
decreased T follicular helper cell number  (IAGP)
decreased T-helper 17 cell number  (IAGP)
dermatitis  (IAGP)
enlarged lymph nodes  (IAGP)
enlarged spleen  (IAGP)
epidermal hyperplasia  (IAGP)
hair follicle degeneration  (IAGP)
hyperkeratosis  (IAGP)
impaired skin barrier function  (IAGP)
increased germinal center B cell number  (IAGP)
increased IgG1 level  (IAGP)
increased regulatory T cell number  (IAGP)
increased susceptibility to autoimmune diabetes  (IAGP)
increased T cell number  (IAGP)
increased T follicular helper cell number  (IAGP)
increased T-helper 1 cell number  (IAGP)
liver inflammation  (IAGP)
lung inflammation  (IAGP)
no abnormal phenotype detected  (IAGP)
premature death  (IAGP)
premature hair loss  (IAGP)
respiratory system inflammation  (IAGP)
scaly skin  (IAGP)
skin fibrosis  (IAGP)
skin hyperplasia  (IAGP)
skin lesions  (IAGP)
thick skin  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Positional cloning of the mouse saccharin preference (Sac) locus. Bachmanov AA, etal., Chem Senses 2001 Sep;26(7):925-33.
2. Gene structure and chromosomal localization of the mouse homologue of rat OX40 protein. Birkeland ML, etal., Eur J Immunol 1995 Apr;25(4):926-30.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Negative immune factors might predominate local tumor immune status and promote carcinogenesis in cervical carcinoma. Zhao M, etal., Virol J. 2017 Jan 13;14(1):5. doi: 10.1186/s12985-016-0670-8.
Additional References at PubMed
PMID:7510240   PMID:7749983   PMID:8076595   PMID:8228223   PMID:8765008   PMID:9418902   PMID:10518213   PMID:10586044   PMID:10626892   PMID:10975814   PMID:11157058   PMID:11239407  
PMID:11567634   PMID:11739485   PMID:11739496   PMID:11739537   PMID:11777959   PMID:12370402   PMID:12477932   PMID:12478477   PMID:12516549   PMID:12521997   PMID:12538659   PMID:12753741  
PMID:12794142   PMID:12860930   PMID:14500627   PMID:14634058   PMID:14635034   PMID:14644025   PMID:14730361   PMID:14734751   PMID:15004159   PMID:15067059   PMID:15153490   PMID:15316035  
PMID:15322191   PMID:15368274   PMID:15385798   PMID:15528328   PMID:15591118   PMID:15661901   PMID:15778343   PMID:15856473   PMID:15894279   PMID:16034107   PMID:16148096   PMID:16301745  
PMID:16393983   PMID:16455980   PMID:16501042   PMID:16541471   PMID:16602821   PMID:16670306   PMID:16785519   PMID:17068285   PMID:17429847   PMID:17575071   PMID:17641007   PMID:17675479  
PMID:17675480   PMID:17875988   PMID:17911646   PMID:18025166   PMID:18292503   PMID:18362171   PMID:18490723   PMID:18593921   PMID:18713990   PMID:18941188   PMID:18993084   PMID:19008373  
PMID:19017962   PMID:19017988   PMID:19050285   PMID:19109169   PMID:19155495   PMID:19217323   PMID:19342632   PMID:19414558   PMID:19544310   PMID:19609980   PMID:19643985   PMID:19668367  
PMID:19672905   PMID:19692644   PMID:19710907   PMID:19786532   PMID:19943952   PMID:20019337   PMID:20368580   PMID:20427774   PMID:20584752   PMID:20806292   PMID:20808283   PMID:20826752  
PMID:20952591   PMID:21183789   PMID:21282629   PMID:21289304   PMID:21400495   PMID:21435587   PMID:21491419   PMID:21653238   PMID:21677750   PMID:21788408   PMID:21820713   PMID:21856952  
PMID:21873635   PMID:21880986   PMID:21924079   PMID:22075698   PMID:22147766   PMID:22178730   PMID:22229156   PMID:22266281   PMID:22363815   PMID:22496812   PMID:22611241   PMID:22842344  
PMID:22956587   PMID:22969431   PMID:23036746   PMID:23295363   PMID:23334789   PMID:23569233   PMID:23584070   PMID:23593329   PMID:23616302   PMID:23817421   PMID:23936461   PMID:24045961  
PMID:24068673   PMID:24076050   PMID:24101548   PMID:24166976   PMID:24238339   PMID:24477678   PMID:24633226   PMID:24732076   PMID:24874427   PMID:24957461   PMID:25103720   PMID:25115246  
PMID:25347065   PMID:25404365   PMID:26099023   PMID:26162078   PMID:26728651   PMID:26976612   PMID:27010430   PMID:27066504   PMID:27256884   PMID:27317259   PMID:27492902   PMID:27580926  
PMID:27806296   PMID:27895177   PMID:28045060   PMID:28432083   PMID:28436935   PMID:28504697   PMID:28612217   PMID:28646041   PMID:28684423   PMID:28696253   PMID:28747670   PMID:28848055  
PMID:29344664   PMID:29795285   PMID:29907525   PMID:30021159   PMID:30213644   PMID:30413360   PMID:30578350   PMID:30590049   PMID:31470268   PMID:31672934   PMID:31704879   PMID:32133635  
PMID:32169842   PMID:32647184   PMID:33022229   PMID:33160971   PMID:33757384   PMID:33785369   PMID:34526995   PMID:35720294   PMID:36640762   PMID:36796366   PMID:37060810   PMID:37122720  
PMID:37211291   PMID:37932534  


Genomics

Comparative Map Data
Tnfrsf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,098,049 - 156,101,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,098,300 - 156,101,069 (+)EnsemblGRCm39 Ensembl
GRCm384156,013,595 - 156,016,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,013,843 - 156,016,612 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,387,804 - 155,390,698 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,857,495 - 154,860,389 (+)NCBIMGSCv36mm8
Celera4158,276,449 - 158,279,355 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.68NCBI
TNFRSF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,211,340 - 1,214,153 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,211,326 - 1,214,153 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,146,720 - 1,149,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,136,569 - 1,139,375 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411,186,629 - 1,189,435NCBI
Celera11,434,142 - 1,436,950 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1418,421 - 421,246 (-)NCBIHuRef
CHM1_111,133,180 - 1,136,022 (-)NCBICHM1_1
T2T-CHM13v2.01639,783 - 642,610 (-)NCBIT2T-CHM13v2.0
Tnfrsf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,889,134 - 171,891,824 (+)NCBIGRCr8
mRatBN7.25166,606,909 - 166,609,599 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,606,909 - 166,609,599 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,310,441 - 169,313,132 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,131,863 - 171,134,554 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,094,395 - 171,097,086 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,447,784 - 173,450,474 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,447,784 - 173,450,474 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,921,804 - 176,924,494 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,856,351 - 172,859,041 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,866,845 - 172,869,536 (+)NCBI
Celera5164,807,766 - 164,810,456 (+)NCBICelera
Cytogenetic Map5q36NCBI
Tnfrsf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,567,220 - 9,569,676 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,565,424 - 9,569,836 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,011,897 - 227,014,893 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,707,527 - 225,711,573 (+)NCBINHGRI_mPanPan1
PanPan1.111,168,706 - 1,171,341 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,168,935 - 1,171,337 (-)Ensemblpanpan1.1panPan2
TNFRSF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,401,410 - 56,404,410 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,401,384 - 56,404,761 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,478,386 - 56,481,328 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,604,302 - 56,607,244 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1556,595,039 - 56,597,980 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,487,321 - 56,490,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,877,316 - 56,880,258 (-)NCBIUU_Cfam_GSD_1.0
Tnfrsf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,561,562 - 27,567,137 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,901,749 - 1,904,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,523,804 - 63,526,666 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,523,850 - 63,526,672 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,011,607 - 58,014,420 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,231,064 - 130,234,525 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,231,584 - 130,234,313 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,799,764 - 34,803,311 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,373,810 - 8,376,204 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,372,092 - 8,376,108 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tnfrsf4
149 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:513
Count of miRNA genes:372
Interacting mature miRNAs:434
Transcripts:ENSMUST00000030952, ENSMUST00000127377, ENSMUST00000143576
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
D4Mon25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384156,016,854 - 156,016,984UniSTSGRCm38
MGSCv374155,390,963 - 155,391,093UniSTSGRCm37
Celera4158,279,620 - 158,279,750UniSTS
Cytogenetic Map4E2UniSTS
cM Map479.4UniSTS
D4Mon26  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384156,012,980 - 156,013,139UniSTSGRCm38
MGSCv374155,387,089 - 155,387,248UniSTSGRCm37
Celera4158,275,730 - 158,275,893UniSTS
Cytogenetic Map4E2UniSTS
cM Map479.4UniSTS
UniSTS:224731  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384156,016,481 - 156,016,582UniSTSGRCm38
MGSCv374155,390,590 - 155,390,691UniSTSGRCm37
Celera4158,279,247 - 158,279,348UniSTS
Cytogenetic Map4E2UniSTS
cM Map479.4UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000030952   ⟹   ENSMUSP00000030952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,098,300 - 156,101,069 (+)Ensembl
GRCm38.p6 Ensembl4156,013,843 - 156,016,612 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,098,706 - 156,099,715 (+)Ensembl
GRCm38.p6 Ensembl4156,014,249 - 156,015,258 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143576
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,098,313 - 156,101,056 (+)Ensembl
GRCm38.p6 Ensembl4156,013,856 - 156,016,599 (+)Ensembl
RefSeq Acc Id: NM_011659   ⟹   NP_035789
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394156,098,152 - 156,101,046 (+)NCBI
GRCm384156,013,695 - 156,016,589 (+)NCBI
MGSCv374155,387,804 - 155,390,698 (+)RGD
Celera4158,276,449 - 158,279,355 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538724   ⟹   XP_006538787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394156,098,049 - 156,101,070 (+)NCBI
GRCm384156,013,595 - 156,016,613 (+)NCBI
Sequence:
RefSeq Acc Id: NP_035789   ⟸   NM_011659
- Peptide Label: precursor
- UniProtKB: P47741 (UniProtKB/Swiss-Prot),   B1ASL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538787   ⟸   XM_006538724
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000030952   ⟸   ENSMUST00000030952
Protein Domains
TNFR-Cys

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47741-F1-model_v2 AlphaFold P47741 1-272 view protein structure

Promoters
RGD ID:6836551
Promoter ID:MM_KWN:41214
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000025777,   OTTMUST00000025779,   UC008WFV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364155,387,866 - 155,388,417 (+)MPROMDB
RGD ID:6847864
Promoter ID:MM_ACW:36847
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:TNFRSF4.DSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364155,390,126 - 155,390,626 (+)MPROMDB
RGD ID:6885850
Promoter ID:EPDNEW_M6376
Type:initiation region
Name:Tnfrsf4_1
Description:Mus musculus tumor necrosis factor receptor superfamily, member4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384156,013,843 - 156,013,903EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104512 AgrOrtholog
Ensembl Genes ENSMUSG00000029075 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030952 ENTREZGENE
  ENSMUST00000030952.6 UniProtKB/TrEMBL
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro TNFR/NGFR_Cys_rich_reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFR_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFRSF4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22163 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104512 ENTREZGENE
NCBI Gene 22163 ENTREZGENE
PANTHER PTHR47881 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TNFR_c6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tnfrsf4 PhenoGen
PRINTS TNFACTORR4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TNFR_NGFR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Ephrin_rec_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1ASL3 ENTREZGENE, UniProtKB/TrEMBL
  P47741 ENTREZGENE, UniProtKB/Swiss-Prot