ETFA (electron transfer flavoprotein subunit alpha) - Rat Genome Database

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Gene: ETFA (electron transfer flavoprotein subunit alpha) Homo sapiens
Analyze
Symbol: ETFA
Name: electron transfer flavoprotein subunit alpha
RGD ID: 1342675
HGNC Page HGNC:3481
Description: Enables electron transfer activity; flavin adenine dinucleotide binding activity; and oxidoreductase activity. Involved in amino acid catabolic process; fatty acid beta-oxidation using acyl-CoA dehydrogenase; and respiratory electron transport chain. Located in mitochondrion. Part of electron transfer flavoprotein complex. Implicated in multiple acyl-CoA dehydrogenase deficiency.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: alpha-ETF; electron transfer flavoprotein alpha subunit; electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha, mitochondrial; electron transfer flavoprotein, alpha polypeptide; electron-transfer-flavoprotein alpha polypeptide; EMA; GA2; glutaric aciduria II; MADD; multiple acyl-CoA dehydrogenase deficiency
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381576,215,353 - 76,311,469 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1576,188,555 - 76,311,730 (-)EnsemblGRCh38hg38GRCh38
GRCh371576,507,694 - 76,603,810 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361574,295,636 - 74,390,865 (-)NCBINCBI36Build 36hg18NCBI36
Build 341574,295,690 - 74,390,784NCBI
Celera1553,434,725 - 53,530,031 (-)NCBICelera
Cytogenetic Map15q24.2-q24.3NCBI
HuRef1553,265,219 - 53,360,736 (-)NCBIHuRef
CHM1_11576,628,067 - 76,723,216 (-)NCBICHM1_1
T2T-CHM13v2.01574,086,268 - 74,182,563 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 43 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ETFAHumanBloom syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
ETFAHumancolorectal cancer  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
ETFAHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:16510302 more ...
ETFAHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
ETFAHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
ETFAHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
ETFAHumanglutaric acidemia type 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Glutaryl-CoA oxidase deficiencyClinVarPMID:31690835
ETFAHumanGlutaric Aciduria 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Glutaric acidemia type 2AClinVarPMID:25741868 and PMID:28492532
ETFAHumanGlutaric Aciduria 2  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Glutaric acidemia type 2AClinVarPMID:28492532
ETFAHumanGlutaric Aciduria 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Glutaric acidemia type 2AClinVarPMID:17576681 more ...
ETFAHumanGlutaric Aciduria 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Glutaric acidemia type 2AClinVarPMID:16510302 and PMID:28492532
ETFAHumanGlutaric Aciduria 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Glutaric acidemia type 2AClinVarPMID:16510302 more ...
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVarPMID:28492532
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVarPMID:16510302 more ...
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVarPMID:25741868
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVarPMID:16510302 more ...
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVarPMID:28492532
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVarPMID:25741868 and PMID:31268564
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVarPMID:25741868 and PMID:28492532
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVar 
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Object Symbol
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Original Reference(s)
ETFAHumanhepatocellular carcinoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:21472284
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
ETFAHumanosteoarthritis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18784066
Object Symbol
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Original Reference(s)
ETFAHumanmultiple acyl-CoA dehydrogenase deficiency  IAGP 7240710 OMIM 

1 to 20 of 128 rows

  
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Original Reference(s)
ETFAHuman(+)-schisandrin B multiple interactionsISOEtfa (Rattus norvegicus)6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ETFA mRNA]CTDPMID:31150632
ETFAHuman(S)-nicotine multiple interactionsISOEtfa (Mus musculus)6480464[Nicotine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
ETFAHuman1,2-dimethylhydrazine multiple interactionsISOEtfa (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ETFA mRNACTDPMID:22206623
ETFAHuman1,2-dimethylhydrazine decreases expressionISOEtfa (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of ETFA mRNACTDPMID:22206623
ETFAHuman1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOEtfa (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:20230807
ETFAHuman1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISOEtfa (Mus musculus)6480464[Nicotine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
ETFAHuman17beta-estradiol decreases expressionISOEtfa (Mus musculus)6480464Estradiol results in decreased expression of ETFA mRNACTDPMID:39298647
ETFAHuman2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:31675489
ETFAHuman2,2,2-tetramine multiple interactionsISOEtfa (Rattus norvegicus)6480464Trientine inhibits the reaction [Streptozocin results in decreased expression of ETFA protein]CTDPMID:19634143
ETFAHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOEtfa (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of ETFA mRNACTDPMID:21215274 and PMID:34747641
ETFAHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISOEtfa (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ETFA mRNACTDPMID:21570461
ETFAHuman2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOEtfa (Mus musculus)64804642 more ...CTDPMID:38648751
ETFAHuman2,6-dimethoxyphenol multiple interactionsEXP 6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in decreased expression of and affects the localization of ETFA proteinCTDPMID:38598786
ETFAHuman3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine decreases expressionISOEtfa (Rattus norvegicus)6480464Puromycin Aminonucleoside results in decreased expression of ETFA proteinCTDPMID:19264907
ETFAHuman3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of ETFA mRNACTDPMID:28628672
ETFAHuman3H-1,2-dithiole-3-thione decreases expressionISOEtfa (Rattus norvegicus)64804641 and 2-dithiol-3-thione results in decreased expression of ETFA mRNACTDPMID:19162173
ETFAHuman4,4'-sulfonyldiphenol increases expressionISOEtfa (Mus musculus)6480464bisphenol S results in increased expression of ETFA mRNACTDPMID:39298647
ETFAHumanacetamide decreases expressionISOEtfa (Rattus norvegicus)6480464acetamide results in decreased expression of ETFA mRNACTDPMID:31881176
ETFAHumanacrolein multiple interactionsEXP 6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased expression of ETFA mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased expression of ETFA mRNACTDPMID:32699268
ETFAHumanactinomycin D multiple interactionsEXP 6480464[Dactinomycin co-treated with nutlin 3] results in increased secretion of ETFA proteinCTDPMID:38460933

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Biological Process

  

Cellular Component
1 to 11 of 11 rows

  
Object Symbol
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Term
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Reference
Notes
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Original Reference(s)
ETFAHumanelectron transfer flavoprotein complex part_ofIPI 150520179 PMID:8962055ComplexPortalPMID:8962055
ETFAHumanmitochondrial matrix located_inNAS 150520179 PMID:8504797ComplexPortalPMID:8504797
ETFAHumanmitochondrial matrix located_inIEAUniProtKB-SubCell:SL-0170150520179 UniProtGO_REF:0000044
ETFAHumanmitochondrial matrix located_inTAS 150520179 PMID:8617498ReactomePMID:8617498 more ...
ETFAHumanmitochondrial matrix located_inIEAUniRule:UR001303799150520179 UniProtGO_REF:0000104
ETFAHumanmitochondrion located_inHDA 150520179 PMID:20833797UniProtPMID:20833797
ETFAHumanmitochondrion is_active_inIBAPANTHER:PTN000097952 more ...150520179 GO_CentralGO_REF:0000033
ETFAHumanmitochondrion located_inIEAUniProtKB-KW:KW-0496150520179 UniProtGO_REF:0000043
ETFAHumanmitochondrion located_inIDA 150520179 HPAGO_REF:0000052
ETFAHumanmitochondrion located_inHTP 150520179 PMID:34800366FlyBasePMID:34800366
ETFAHumanmitochondrion located_inTAS 150520179 PMID:3170610PINCPMID:3170610
1 to 11 of 11 rows

Molecular Function
1 to 11 of 11 rows

  
1 to 11 of 11 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Original Reference(s)
ETFAHumanfatty acid beta degradation pathway   TAS 2317589 RGD 
1 to 20 of 36 rows
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Source
Original Reference(s)
ETFAHumanAbnormal facial shape  IAGP 8699517 HPOMIM:231680
ETFAHumanAbnormal pinna morphology  IAGP 8699517 HPOMIM:231680
ETFAHumanAbnormality of the genital system  IAGP 8699517 HPOMIM:231680
ETFAHumanAcidosis  IAGP 8699517 HPOMIM:231680
ETFAHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:231680
ETFAHumanDepressed nasal bridge  IAGP 8699517 HPOMIM:231680
ETFAHumanDevelopmental cataract  IAGP 8699517 HPOMIM:231680
ETFAHumanElectron transfer flavoprotein-ubiquinone oxidoreductase defect  IAGP 8699517 HPOMIM:231680
ETFAHumanElevated circulating glutaric acid concentration  IAGP 8699517 HPOMIM:231680
ETFAHumanElevated urinary 5-hydroxyhexanoic acid level  IAGP 8699517 HPOMIM:231680
ETFAHumanEthylmalonic aciduria  IAGP 8699517 HPOMIM:231680
ETFAHumanGeneralized aminoaciduria  IAGP 8699517 HPOMIM:231680
ETFAHumanGliosis  IAGP 8699517 HPOMIM:231680
ETFAHumanGlutaric aciduria  IAGP 8699517 HPOMIM:231680
ETFAHumanGlycosuria  IAGP 8699517 HPOMIM:231680
ETFAHumanHepatic periportal necrosis  IAGP 8699517 HPOMIM:231680
ETFAHumanHepatic steatosis  IAGP 8699517 HPOMIM:231680
ETFAHumanHepatomegaly  IAGP 8699517 HPOMIM:231680
ETFAHumanHigh forehead  IAGP 8699517 HPOMIM:231680
ETFAHumanHypoglycemia  IAGP 8699517 HPOMIM:231680
1 to 20 of 36 rows
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Original Reference(s)
ETFAHumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311

#
Reference Title
Reference Citation
1. Acyl-CoA dehydrogenases. A mechanistic overview. Ghisla S and Thorpe C, Eur J Biochem. 2004 Feb;271(3):494-508.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
1 to 10 of 13 rows
PMID:1430199   PMID:1882842   PMID:3053288   PMID:3170610   PMID:7821789   PMID:8504797   PMID:8617498   PMID:8962055   PMID:9334218   PMID:10356313   PMID:10423253   PMID:10527805  
PMID:11756429   PMID:12477932   PMID:12815589   PMID:15489334   PMID:16344560   PMID:16510302   PMID:17081983   PMID:17314511   PMID:17689999   PMID:18029348   PMID:18624398   PMID:19208393  
PMID:20186120   PMID:20562859   PMID:20674745   PMID:20833797   PMID:20877624   PMID:21081666   PMID:21219902   PMID:21308847   PMID:21873635   PMID:21901101   PMID:22491018   PMID:22863883  
PMID:22939629   PMID:23376485   PMID:23874603   PMID:24394546   PMID:24606901   PMID:24711643   PMID:25416781   PMID:25921289   PMID:26186194   PMID:26344197   PMID:26465331   PMID:26496610  
PMID:26618866   PMID:26638075   PMID:26839216   PMID:26871637   PMID:27342126   PMID:27499296   PMID:27609421   PMID:27684187   PMID:28302793   PMID:28320150   PMID:28380382   PMID:28514442  
PMID:28533407   PMID:28675297   PMID:28718761   PMID:28973437   PMID:29117863   PMID:29128334   PMID:29301933   PMID:29331416   PMID:29395067   PMID:29507755   PMID:29509190   PMID:29509794  
PMID:29568061   PMID:29987050   PMID:30194290   PMID:30463901   PMID:30575818   PMID:30833792   PMID:30948266   PMID:30997501   PMID:31091453   PMID:31182584   PMID:31418342   PMID:31536960  
PMID:31560077   PMID:31586073   PMID:31617661   PMID:31620119   PMID:31665600   PMID:31839598   PMID:31871319   PMID:31996215   PMID:32353859   PMID:32550677   PMID:32628020   PMID:32687490  
PMID:32694731   PMID:32707033   PMID:32877691   PMID:32905556   PMID:32913203   PMID:32963011   PMID:33022573   PMID:33024031   PMID:33060197   PMID:33567341   PMID:33729478   PMID:33762435  
PMID:33916271   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34405537   PMID:34428256   PMID:34704421   PMID:34709727   PMID:34800366   PMID:34901782   PMID:35063084   PMID:35156780  
1 to 10 of 13 rows



ETFA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381576,215,353 - 76,311,469 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1576,188,555 - 76,311,730 (-)EnsemblGRCh38hg38GRCh38
GRCh371576,507,694 - 76,603,810 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361574,295,636 - 74,390,865 (-)NCBINCBI36Build 36hg18NCBI36
Build 341574,295,690 - 74,390,784NCBI
Celera1553,434,725 - 53,530,031 (-)NCBICelera
Cytogenetic Map15q24.2-q24.3NCBI
HuRef1553,265,219 - 53,360,736 (-)NCBIHuRef
CHM1_11576,628,067 - 76,723,216 (-)NCBICHM1_1
T2T-CHM13v2.01574,086,268 - 74,182,563 (-)NCBIT2T-CHM13v2.0
Etfa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39955,361,720 - 55,419,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl955,361,792 - 55,419,527 (-)EnsemblGRCm39 Ensembl
GRCm38955,454,436 - 55,512,243 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl955,454,508 - 55,512,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv37955,302,243 - 55,360,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36955,252,660 - 55,310,380 (-)NCBIMGSCv36mm8
Celera952,696,302 - 52,754,125 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.13NCBI
Etfa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,731,192 - 64,787,965 (-)NCBIGRCr8
mRatBN7.2855,835,115 - 55,891,890 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,835,134 - 55,891,969 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx861,377,604 - 61,434,383 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0859,656,602 - 59,713,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0857,520,835 - 57,577,614 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0860,028,786 - 60,086,352 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl860,028,789 - 60,086,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0858,608,416 - 58,665,383 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4859,013,798 - 59,072,013 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1859,032,895 - 59,091,022 (-)NCBI
Celera855,318,874 - 55,375,436 (-)NCBICelera
Cytogenetic Map8q24NCBI
Etfa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554501,392,479 - 1,451,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554501,392,526 - 1,451,591 (-)NCBIChiLan1.0ChiLan1.0
ETFA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21665,413,801 - 65,512,497 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11569,578,211 - 69,676,833 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01555,128,686 - 55,227,369 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,720,198 - 74,818,494 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,720,198 - 74,818,494 (-)Ensemblpanpan1.1panPan2
ETFA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13039,848,241 - 39,925,809 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3039,848,270 - 39,964,823 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3039,707,332 - 39,784,202 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03040,052,278 - 40,129,606 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3040,052,340 - 40,129,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13040,001,191 - 40,078,170 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03040,047,242 - 40,124,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03040,285,034 - 40,362,157 (+)NCBIUU_Cfam_GSD_1.0
Etfa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,020,782 - 118,094,606 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647135,868,757 - 35,943,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647135,868,851 - 35,942,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETFA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl756,450,520 - 56,540,253 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1756,450,508 - 56,540,275 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,946,251 - 61,036,017 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ETFA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1266,970,593 - 7,075,077 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl266,970,584 - 7,076,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048134,642,527 - 134,750,547 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etfa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248941,874,695 - 1,936,120 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248941,874,859 - 1,935,587 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in ETFA
527 total Variants

1 to 10 of 596 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
ETFA, 3-BP DEL, NT808 deletion Glutaric acidemia IIa [RCV000002714] Chr15:15q23-q25 pathogenic
NM_000126.4(ETFA):c.963+1del deletion Glutaric acidemia IIa [RCV000002715]|Multiple acyl-CoA dehydrogenase deficiency [RCV002496235]|not specified [RCV003155011] Chr15:76225848 [GRCh38]
Chr15:76518189 [GRCh37]
Chr15:15q24.2
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance
NM_000126.4(ETFA):c.817-32A>G single nucleotide variant Multiple acyl-CoA dehydrogenase deficiency [RCV001526776]|not provided [RCV001692437] Chr15:76231430 [GRCh38]
Chr15:76523771 [GRCh37]
Chr15:15q24.2
benign
NM_000126.4(ETFA):c.733+38T>C single nucleotide variant Multiple acyl-CoA dehydrogenase deficiency [RCV001526777]|not provided [RCV004715477] Chr15:76283719 [GRCh38]
Chr15:76576060 [GRCh37]
Chr15:15q24.2
benign
GRCh38/hg38 15q24.2-26.3(chr15:75307767-101723215)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|See cases [RCV000052346] Chr15:75307767..101723215 [GRCh38]
Chr15:75600108..102263418 [GRCh37]
Chr15:73387161..100080941 [NCBI36]
Chr15:15q24.2-26.3
pathogenic
NM_000126.4(ETFA):c.512C>T (p.Thr171Ile) single nucleotide variant Multiple acyl-CoA dehydrogenase deficiency [RCV000377415]|not provided [RCV000676979]|not specified [RCV000078134] Chr15:76286421 [GRCh38]
Chr15:76286421..76286422 [GRCh38]
Chr15:76578762 [GRCh37]
Chr15:76578762..76578763 [GRCh37]
Chr15:15q24.2
benign|likely benign
NM_000126.4(ETFA):c.470T>G (p.Val157Gly) single nucleotide variant Glutaric acidemia IIa [RCV000002711]|Multiple acyl-CoA dehydrogenase deficiency [RCV002281690] Chr15:76286463 [GRCh38]
Chr15:76578804 [GRCh37]
Chr15:15q24.2
pathogenic|likely pathogenic
NM_000126.4(ETFA):c.797C>T (p.Thr266Met) single nucleotide variant ETFA-related disorder [RCV003904798]|Glutaric acidemia IIa [RCV000002712]|Multiple acyl-CoA dehydrogenase deficiency [RCV000332032]|not provided [RCV000185868] Chr15:76274431 [GRCh38]
Chr15:76566772 [GRCh37]
Chr15:15q24.2
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity
NM_000126.4(ETFA):c.346G>A (p.Gly116Arg) single nucleotide variant Glutaric acidemia IIa [RCV000002713]|Multiple acyl-CoA dehydrogenase deficiency [RCV003472959] Chr15:76292436 [GRCh38]
Chr15:76584777 [GRCh37]
Chr15:15q24.2
pathogenic|likely pathogenic
NM_000126.4(ETFA):c.39+12C>G single nucleotide variant Multiple acyl-CoA dehydrogenase deficiency [RCV000371483]|not provided [RCV001610351]|not specified [RCV000078133] Chr15:76311338 [GRCh38]
Chr15:76603679 [GRCh37]
Chr15:15q24.3
benign
1 to 10 of 596 rows

Predicted Target Of
Summary Value
Count of predictions:2456
Count of miRNA genes:925
Interacting mature miRNAs:1098
Transcripts:ENST00000267950, ENST00000433983, ENST00000557943, ENST00000557975, ENST00000558803, ENST00000559075, ENST00000559386, ENST00000559602, ENST00000559758, ENST00000559973, ENST00000560044, ENST00000560179, ENST00000560309, ENST00000560345, ENST00000560595, ENST00000560726, ENST00000560816, ENST00000560899, ENST00000561092, ENST00000565910
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406957825GWAS606801_Hresponse to xenobiotic stimulus QTL GWAS606801 (human)0.0000007response to xenobiotic stimulus157625459276254593Human
597137108GWAS1233182_Hbutyrylcarnitine measurement QTL GWAS1233182 (human)1e-16butyrylcarnitine measurement157624382376243825Human
596958704GWAS1078223_Hcarnitine measurement QTL GWAS1078223 (human)3e-29carnitine measurement157628689376286894Human
597313308GWAS1409382_Hdimethylglycine measurement QTL GWAS1409382 (human)3e-11dimethylglycine measurement157624611876246119Human
597319100GWAS1415174_Hisobutyrylglycine measurement QTL GWAS1415174 (human)2e-14isobutyrylglycine measurement157629543676295437Human
597325213GWAS1421287_Hglutarylcarnitine (C5-DC) measurement QTL GWAS1421287 (human)1e-15glutarylcarnitine (C5-DC) measurement157624611876246119Human
597140848GWAS1236922_Hisobutyrylcarnitine measurement QTL GWAS1236922 (human)1e-12isobutyrylcarnitine measurement157626792476267925Human
407041550GWAS690526_Hcentral nervous system cancer QTL GWAS690526 (human)6e-09central nervous system integrity trait (VT:0010772)157628642176286422Human
597487729GWAS1583803_Hcarnitine measurement QTL GWAS1583803 (human)3e-29blood carnitine amount (VT:0003977)157628689376286894Human
597035271GWAS1131345_Hheel bone mineral density QTL GWAS1131345 (human)6e-09heel bone mineral densitybone mineral density (CMO:0001226)157626265076262651Human

1 to 10 of 19 rows
STS-J04058  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371576,508,722 - 76,508,907UniSTSGRCh37
Build 361574,295,777 - 74,295,962RGDNCBI36
Celera1553,434,819 - 53,435,004RGD
Cytogenetic Map15q23-q25UniSTS
HuRef1553,265,313 - 53,265,498UniSTS
GeneMap99-GB4 RH Map15268.81UniSTS
D15S922  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371576,517,500 - 76,517,625UniSTSGRCh37
Build 361574,304,555 - 74,304,680RGDNCBI36
Celera1553,443,600 - 53,443,725RGD
Cytogenetic Map15q23-q25UniSTS
HuRef1553,274,094 - 53,274,219UniSTS
Whitehead-RH Map15281.2UniSTS
Whitehead-YAC Contig Map15 UniSTS
STS-H78599  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371576,522,056 - 76,522,197UniSTSGRCh37
Build 361574,309,111 - 74,309,252RGDNCBI36
Celera1553,448,167 - 53,448,308RGD
Cytogenetic Map15q23-q25UniSTS
HuRef1553,278,697 - 53,278,838UniSTS
GeneMap99-GB4 RH Map15263.73UniSTS
WI-18782  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371541,871,237 - 41,871,365UniSTSGRCh37
GRCh371576,549,585 - 76,550,566UniSTSGRCh37
Build 361539,658,529 - 39,658,657RGDNCBI36
Celera1553,475,803 - 53,476,788UniSTS
Celera1518,639,204 - 18,639,332RGD
Cytogenetic Map15q23-q25UniSTS
Cytogenetic Map15q15UniSTS
HuRef1553,306,227 - 53,307,208UniSTS
HuRef1518,719,436 - 18,719,564UniSTS
GeneMap99-GB4 RH Map15147.97UniSTS
Whitehead-RH Map15105.8UniSTS
NCBI RH Map15141.0UniSTS
D15S925  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371576,528,301 - 76,528,486UniSTSGRCh37
Build 361574,315,356 - 74,315,541RGDNCBI36
Celera1553,454,193 - 53,454,378RGD
Cytogenetic Map15q23-q25UniSTS
HuRef1553,284,991 - 53,285,176UniSTS
Whitehead-RH Map15253.7UniSTS
Whitehead-YAC Contig Map15 UniSTS
WI-20018  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371541,871,240 - 41,871,497UniSTSGRCh37
GRCh371576,549,453 - 76,550,564UniSTSGRCh37
Build 361539,658,532 - 39,658,789RGDNCBI36
Celera1553,475,671 - 53,476,786UniSTS
Celera1518,639,207 - 18,639,464RGD
Cytogenetic Map15q15UniSTS
Cytogenetic Map15q23-q25UniSTS
HuRef1518,719,439 - 18,719,696UniSTS
HuRef1553,306,095 - 53,307,206UniSTS
GeneMap99-GB4 RH Map15146.34UniSTS
Whitehead-RH Map1592.1UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1


1 to 29 of 29 rows
RefSeq Transcripts NG_007077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001127716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_931766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA557337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC027243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH011801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ224002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG261160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT009796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU176141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D28380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA838974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ891449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J04058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 29 of 29 rows

Ensembl Acc Id: ENST00000267950   ⟹   ENSP00000267950
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,250 - 76,311,448 (-)Ensembl
Ensembl Acc Id: ENST00000433983   ⟹   ENSP00000399273
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,084 - 76,311,404 (-)Ensembl
Ensembl Acc Id: ENST00000557943   ⟹   ENSP00000452762
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,353 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000557975
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,130 - 76,228,249 (-)Ensembl
Ensembl Acc Id: ENST00000558803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,274,133 - 76,283,841 (-)Ensembl
Ensembl Acc Id: ENST00000559075
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,230,504 - 76,311,412 (-)Ensembl
Ensembl Acc Id: ENST00000559386   ⟹   ENSP00000452777
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,225,857 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000559602   ⟹   ENSP00000452659
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,483 - 76,311,414 (-)Ensembl
Ensembl Acc Id: ENST00000559758
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,274,176 - 76,292,622 (-)Ensembl
Ensembl Acc Id: ENST00000559973   ⟹   ENSP00000454194
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,559 - 76,292,491 (-)Ensembl
Ensembl Acc Id: ENST00000560044   ⟹   ENSP00000452942
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,539 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000560179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,314 - 76,228,172 (-)Ensembl
Ensembl Acc Id: ENST00000560309   ⟹   ENSP00000453753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,286,406 - 76,311,443 (-)Ensembl
Ensembl Acc Id: ENST00000560345   ⟹   ENSP00000453017
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,274,419 - 76,292,698 (-)Ensembl
Ensembl Acc Id: ENST00000560595   ⟹   ENSP00000453345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,315 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000560726   ⟹   ENSP00000453098
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,468 - 76,311,466 (-)Ensembl
Ensembl Acc Id: ENST00000560816
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,245,212 - 76,286,491 (-)Ensembl
Ensembl Acc Id: ENST00000560899   ⟹   ENSP00000453422
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,225,905 - 76,311,414 (-)Ensembl
Ensembl Acc Id: ENST00000561092
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,287,768 - 76,311,402 (-)Ensembl
Ensembl Acc Id: ENST00000565910   ⟹   ENSP00000458001
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,295 - 76,311,730 (-)Ensembl
Ensembl Acc Id: ENST00000685118   ⟹   ENSP00000509473
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,225,910 - 76,311,439 (-)Ensembl
Ensembl Acc Id: ENST00000685548   ⟹   ENSP00000510343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,287 - 76,311,730 (-)Ensembl
Ensembl Acc Id: ENST00000685863   ⟹   ENSP00000509361
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000687293   ⟹   ENSP00000509928
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,730 (-)Ensembl
Ensembl Acc Id: ENST00000687975   ⟹   ENSP00000508690
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,432 (-)Ensembl
Ensembl Acc Id: ENST00000688154   ⟹   ENSP00000510637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,216,314 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000688389   ⟹   ENSP00000510491
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,730 (-)Ensembl
Ensembl Acc Id: ENST00000688637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,227,721 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000688908   ⟹   ENSP00000510242
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,392 (-)Ensembl
Ensembl Acc Id: ENST00000689120
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,281,936 - 76,287,016 (-)Ensembl
Ensembl Acc Id: ENST00000689730   ⟹   ENSP00000510006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000689739
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,230,716 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000690610   ⟹   ENSP00000510473
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,188,555 - 76,311,475 (-)Ensembl
Ensembl Acc Id: ENST00000691021   ⟹   ENSP00000510805
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,379 - 76,311,472 (-)Ensembl
Ensembl Acc Id: ENST00000691071
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,230,731 - 76,295,637 (-)Ensembl
Ensembl Acc Id: ENST00000691695   ⟹   ENSP00000509402
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,469 (-)Ensembl
Ensembl Acc Id: ENST00000692691   ⟹   ENSP00000508808
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,730 (-)Ensembl
Ensembl Acc Id: ENST00000693064   ⟹   ENSP00000510720
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1576,215,357 - 76,311,418 (-)Ensembl
RefSeq Acc Id: NM_000126   ⟹   NP_000117
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381576,215,353 - 76,311,469 (-)NCBI
GRCh371576,508,628 - 76,603,810 (-)ENTREZGENE
Build 361574,295,636 - 74,390,865 (-)NCBI Archive
HuRef1553,265,219 - 53,360,736 (-)ENTREZGENE
CHM1_11576,628,067 - 76,723,216 (-)NCBI
T2T-CHM13v2.01574,086,268 - 74,182,563 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001127716   ⟹   NP_001121188
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381576,215,353 - 76,311,469 (-)NCBI
GRCh371576,508,628 - 76,603,810 (-)ENTREZGENE
HuRef1553,265,219 - 53,360,736 (-)ENTREZGENE
CHM1_11576,628,067 - 76,723,216 (-)NCBI
T2T-CHM13v2.01574,086,268 - 74,182,563 (-)NCBI
Sequence:
RefSeq Acc Id: XR_007064434
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381576,225,879 - 76,311,469 (-)NCBI
RefSeq Acc Id: XR_008488929
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01574,096,767 - 74,182,563 (-)NCBI
1 to 5 of 29 rows
1 to 5 of 29 rows
RefSeq Acc Id: NP_001121188   ⟸   NM_001127716
- Peptide Label: isoform b
- UniProtKB: A0A8I5KT03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_000117   ⟸   NM_000126
- Peptide Label: isoform a
- UniProtKB: B4DT43 (UniProtKB/Swiss-Prot),   Q53XN3 (UniProtKB/Swiss-Prot),   P13804 (UniProtKB/Swiss-Prot),   A0A0S2Z3L0 (UniProtKB/TrEMBL),   A0A8I5KYP7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000267950   ⟸   ENST00000267950
Ensembl Acc Id: ENSP00000452762   ⟸   ENST00000557943
Ensembl Acc Id: ENSP00000452777   ⟸   ENST00000559386
Name Modeler Protein Id AA Range Protein Structure
AF-P13804-F1-model_v2 AlphaFold P13804 1-333 view protein structure

RGD ID:6792321
Promoter ID:HG_KWN:21987
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000267950,   NM_001127716,   UC002BBU.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361574,390,619 - 74,391,119 (-)MPROMDB
RGD ID:6852440
Promoter ID:EP74029
Type:initiation region
Name:HS_ETFA
Description:Electron-transfer-flavoprotein, alpha polypeptide (glutaric II)uria II).
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 361574,390,802 - 74,390,862EPD
RGD ID:7230183
Promoter ID:EPDNEW_H20837
Type:initiation region
Name:ETFA_1
Description:electron transfer flavoprotein alpha subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381576,311,469 - 76,311,529EPDNEW


1 to 40 of 58 rows
Database
Acc Id
Source(s)
COSMIC ETFA COSMIC
Ensembl Genes ENSG00000140374 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000433983 ENTREZGENE
  ENST00000433983.6 UniProtKB/Swiss-Prot
  ENST00000557943 ENTREZGENE
  ENST00000557943.6 UniProtKB/Swiss-Prot
  ENST00000688637 ENTREZGENE
  ENST00000690610.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.620 UniProtKB/Swiss-Prot
  TPP-binding domain UniProtKB/Swiss-Prot
GTEx ENSG00000140374 GTEx
HGNC ID HGNC:3481 ENTREZGENE
Human Proteome Map ETFA Human Proteome Map
InterPro DHS-like_NAD/FAD-binding_dom UniProtKB/Swiss-Prot
  ETF_a/b_N UniProtKB/Swiss-Prot
  ETF_a/FixB UniProtKB/Swiss-Prot
  ETF_alpha_N UniProtKB/Swiss-Prot
  ETF_asu_C UniProtKB/Swiss-Prot
  ETF_asu_C_CS UniProtKB/Swiss-Prot
  Rossmann-like_a/b/a_fold UniProtKB/Swiss-Prot
KEGG Report hsa:2108 UniProtKB/Swiss-Prot
NCBI Gene 2108 ENTREZGENE
OMIM 608053 OMIM
PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR43153 UniProtKB/Swiss-Prot
Pfam ETF UniProtKB/Swiss-Prot
  ETF_alpha UniProtKB/Swiss-Prot
PharmGKB PA27897 PharmGKB
PIRSF Electra_flavoP_a UniProtKB/Swiss-Prot
PROSITE ETF_ALPHA UniProtKB/Swiss-Prot
SMART ETF UniProtKB/Swiss-Prot
Superfamily-SCOP Adenine nucleotide alpha hydrolases-like UniProtKB/Swiss-Prot
  SSF52467 UniProtKB/Swiss-Prot
UniProt A0A0S2Z3L0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0S2Z3M4_HUMAN UniProtKB/TrEMBL
  A0A8I5KSA0_HUMAN UniProtKB/TrEMBL
  A0A8I5KT03 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5KU27_HUMAN UniProtKB/TrEMBL
  A0A8I5KUF3_HUMAN UniProtKB/TrEMBL
  A0A8I5KUR2_HUMAN UniProtKB/TrEMBL
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 ETFA  electron transfer flavoprotein subunit alpha  ETFA  electron transfer flavoprotein alpha subunit  Symbol and/or name change 5135510 APPROVED
2016-01-12 ETFA  electron transfer flavoprotein alpha subunit  ETFA  electron-transfer-flavoprotein, alpha polypeptide  Symbol and/or name change 5135510 APPROVED