Etfa (electron transfer flavoprotein subunit alpha) - Rat Genome Database

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Gene: Etfa (electron transfer flavoprotein subunit alpha) Ictidomys tridecemlineatus
Analyze
Symbol: Etfa
Name: electron transfer flavoprotein subunit alpha
RGD ID: 12654914
Description: ENCODES a protein that exhibits electron transfer activity (inferred); flavin adenine dinucleotide binding (inferred); oxidoreductase activity (inferred); INVOLVED IN amino acid catabolic process (inferred); fatty acid beta-oxidation using acyl-CoA dehydrogenase (inferred); respiratory electron transport chain (inferred); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN electron transfer flavoprotein complex (inferred); mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,020,782 - 118,094,606 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647135,868,757 - 35,943,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647135,868,851 - 35,942,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EtfaSquirrelBloom syndrome  ISORGD:13426758554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
EtfaSquirrelcolorectal cancer  ISORGD:13426758554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
EtfaSquirrelgenetic disease  ISORGD:13426758554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:16510302|PMID:23785301|PMID:25741868|PMID:28492532|PMID:30612563
EtfaSquirrelglutaric acidemia type 3  ISORGD:13426758554872ClinVar Annotator: match by term: Glutaryl-CoA oxidase deficiencyClinVarPMID:31690835
EtfaSquirrelGlutaric Aciduria 2  ISORGD:13426758554872ClinVar Annotator: match by term: Glutaric acidemia type 2AClinVarPMID:16510302|PMID:17576681|PMID:18289905|PMID:23785301|PMID:25741868|PMID:28492532|PMID:29096039|PMID:31268564|PMID:9536098
EtfaSquirrelmultiple acyl-CoA dehydrogenase deficiency  ISORGD:13426758554872ClinVar Annotator: match by term: Multiple acyl-CoA dehydrogenase deficiencyClinVarPMID:12486872|PMID:12815589|PMID:1430199|PMID:16199547|PMID:16510302|PMID:16546179|PMID:17576681|PMID:18289905|PMID:1882842|PMID:20674745|PMID:20736750|PMID:23785301|PMID:23867278|PMID:25200064|PMID:25741868|PMID:26409463|PMID:28492532|PMID:29096039|PMID:30510944|PMID:30612563|PMID:31268564|PMID:33450351|PMID:33768790|PMID:37541188|PMID:9334218|PMID:9536098
EtfaSquirrelPAPA syndrome  ISORGD:13426758554872ClinVar Annotator: match by term: PAPA SYNDROMEClinVarPMID:28492532
EtfaSquirrelschizophrenia  ISORGD:13426758554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106|PMID:30208311
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EtfaSquirrelhepatocellular carcinoma  ISORGD:13426759068941CTD Direct Evidence: marker/mechanismCTDPMID:21472284
EtfaSquirrelosteoarthritis  ISORGD:13426759068941CTD Direct Evidence: marker/mechanismCTDPMID:18784066
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EtfaSquirrelmultiple acyl-CoA dehydrogenase deficiency  ISORGD:13426757240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EtfaSquirrelamino acid catabolic process involved_inIEAUniProtKB:P13804|ensembl:ENSP00000452762150520179 EnsemblGO_REF:0000107
EtfaSquirrelfatty acid beta-oxidation using acyl-CoA dehydrogenase involved_inIEAPANTHER:PTN000097980150520179 TreeGrafterGO_REF:0000118
EtfaSquirrelfatty acid beta-oxidation using acyl-CoA dehydrogenase involved_inIEAUniProtKB:P13804|ensembl:ENSP00000452762150520179 EnsemblGO_REF:0000107
EtfaSquirrelrespiratory electron transport chain involved_inIEAUniProtKB:P13804|ensembl:ENSP00000452762150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EtfaSquirrelelectron transfer flavoprotein complex part_ofIEAUniProtKB:P13804|ensembl:ENSP00000452762150520179 EnsemblGO_REF:0000107
EtfaSquirrelmitochondrial matrix located_inIEAUniProtKB-SubCell:SL-0170150520179 UniProtGO_REF:0000044
EtfaSquirrelmitochondrial matrix located_inIEAUniRule:UR001303799150520179 UniProtGO_REF:0000104
EtfaSquirrelmitochondrion located_inIEAUniProtKB:A0A0S2Z3L0|UniProtKB:P13804|ensembl:ENSP00000452762150520179 EnsemblGO_REF:0000107
EtfaSquirrelmitochondrion located_inIEAUniProtKB-KW:KW-0496150520179 UniProtGO_REF:0000043
EtfaSquirrelmitochondrion located_inIEAPANTHER:PTN000097980150520179 TreeGrafterGO_REF:0000118

Molecular Function
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EtfaSquirrelelectron transfer activity enablesIEAPANTHER:PTN000097980150520179 TreeGrafterGO_REF:0000118
EtfaSquirrelelectron transfer activity enablesIEAInterPro:IPR001308150520179 InterProGO_REF:0000002
EtfaSquirrelelectron transfer activity enablesIEAUniProtKB:P13804|ensembl:ENSP00000452762150520179 EnsemblGO_REF:0000107
EtfaSquirrelflavin adenine dinucleotide binding enablesIEAPANTHER:PTN000097980150520179 TreeGrafterGO_REF:0000118
EtfaSquirrelflavin adenine dinucleotide binding enablesIEAUniProtKB:P13804|ensembl:ENSP00000452762150520179 EnsemblGO_REF:0000107
EtfaSquirrelflavin adenine dinucleotide binding enablesIEAInterPro:IPR001308150520179 InterProGO_REF:0000002
EtfaSquirreloxidoreductase activity enablesIEAUniProtKB:P13804|ensembl:ENSP00000452762150520179 EnsemblGO_REF:0000107
EtfaSquirrelprotein binding enablesISOUniProtKB:P381179068941 PMID:27499296, PMID:33961781IntActPMID:27499296|PMID:33961781
EtfaSquirrelprotein binding enablesISOUniProtKB:P135699068941 PMID:26618866, PMID:35156780, PMID:36012204IntActPMID:26618866|PMID:35156780|PMID:36012204
EtfaSquirrelprotein binding enablesISOPR:Q9ER979068941 PMID:22079573MGIPMID:22079573
EtfaSquirrelprotein binding enablesISOUniProtKB:Q8IWL39068941 PMID:24606901, PMID:28380382IntActPMID:24606901|PMID:28380382
EtfaSquirrelprotein binding enablesISOUniProtKB:Q6IPR19068941 PMID:27499296UniProtPMID:27499296
1 to 12 of 12 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EtfaSquirrelfatty acid beta degradation pathway   ISORGD:13426759068941 RGDPMID:14728676|REF_RGD_ID:2317589
PMID:22301074   PMID:30032202  



Etfa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,020,782 - 118,094,606 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647135,868,757 - 35,943,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647135,868,851 - 35,942,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETFA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381576,215,353 - 76,311,469 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1576,188,555 - 76,311,730 (-)EnsemblGRCh38hg38GRCh38
GRCh371576,507,694 - 76,603,810 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361574,295,636 - 74,390,865 (-)NCBINCBI36Build 36hg18NCBI36
Build 341574,295,690 - 74,390,784NCBI
Celera1553,434,725 - 53,530,031 (-)NCBICelera
Cytogenetic Map15q24.2-q24.3NCBI
HuRef1553,265,219 - 53,360,736 (-)NCBIHuRef
CHM1_11576,628,067 - 76,723,216 (-)NCBICHM1_1
T2T-CHM13v2.01574,086,268 - 74,182,563 (-)NCBIT2T-CHM13v2.0
Etfa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39955,361,720 - 55,419,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl955,361,792 - 55,419,527 (-)EnsemblGRCm39 Ensembl
GRCm38955,454,436 - 55,512,243 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl955,454,508 - 55,512,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv37955,302,243 - 55,360,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36955,252,660 - 55,310,380 (-)NCBIMGSCv36mm8
Celera952,696,302 - 52,754,125 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.13NCBI
Etfa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,731,192 - 64,787,965 (-)NCBIGRCr8
mRatBN7.2855,835,115 - 55,891,890 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,835,134 - 55,891,969 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx861,377,604 - 61,434,383 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0859,656,602 - 59,713,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0857,520,835 - 57,577,614 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0860,028,786 - 60,086,352 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl860,028,789 - 60,086,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0858,608,416 - 58,665,383 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4859,013,798 - 59,072,013 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1859,032,895 - 59,091,022 (-)NCBI
Celera855,318,874 - 55,375,436 (-)NCBICelera
Cytogenetic Map8q24NCBI
Etfa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554501,392,479 - 1,451,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554501,392,526 - 1,451,591 (-)NCBIChiLan1.0ChiLan1.0
ETFA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21665,413,801 - 65,512,497 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11569,578,211 - 69,676,833 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01555,128,686 - 55,227,369 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,720,198 - 74,818,494 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,720,198 - 74,818,494 (-)Ensemblpanpan1.1panPan2
ETFA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13039,848,241 - 39,925,809 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3039,848,270 - 39,964,823 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3039,707,332 - 39,784,202 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03040,052,278 - 40,129,606 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3040,052,340 - 40,129,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13040,001,191 - 40,078,170 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03040,047,242 - 40,124,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03040,285,034 - 40,362,157 (+)NCBIUU_Cfam_GSD_1.0
ETFA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl756,450,520 - 56,540,253 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1756,450,508 - 56,540,275 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,946,251 - 61,036,017 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ETFA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1266,970,593 - 7,075,077 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl266,970,584 - 7,076,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048134,642,527 - 134,750,547 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etfa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248941,874,695 - 1,936,120 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248941,874,859 - 1,935,587 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.





RefSeq Transcripts XM_005316839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000005958   ⟹   ENSSTOP00000005330
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647135,868,757 - 35,943,139 (+)Ensembl
RefSeq Acc Id: XM_005316839   ⟹   XP_005316896
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640118,020,782 - 118,094,606 (+)NCBI
SpeTri2.0NW_00493647135,868,851 - 35,942,662 (+)NCBI
Sequence:
Protein RefSeqs XP_005316896 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005330.2
GenBank Protein KAG3262361 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005316896   ⟸   XM_005316839
- UniProtKB: I3M708 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000005330   ⟸   ENSSTOT00000005958


1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000005955 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005958.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.620 UniProtKB/TrEMBL
  TPP-binding domain UniProtKB/TrEMBL
InterPro DHS-like_NAD/FAD-binding_dom UniProtKB/TrEMBL
  ETF_a/b_N UniProtKB/TrEMBL
  ETF_a/FixB UniProtKB/TrEMBL
  ETF_alpha_N UniProtKB/TrEMBL
  ETF_asu_C UniProtKB/TrEMBL
  ETF_asu_C_CS UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
NCBI Gene Etfa ENTREZGENE
PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR43153 UniProtKB/TrEMBL
Pfam ETF UniProtKB/TrEMBL
  ETF_alpha UniProtKB/TrEMBL
PIRSF Electra_flavoP_a UniProtKB/TrEMBL
PROSITE ETF_ALPHA UniProtKB/TrEMBL
SMART ETF UniProtKB/TrEMBL
Superfamily-SCOP Adenine nucleotide alpha hydrolases-like UniProtKB/TrEMBL
  SSF52467 UniProtKB/TrEMBL
UniProt I3M708 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 Etfa  electron transfer flavoprotein subunit alpha    electron transfer flavoprotein alpha subunit  Symbol and/or name change 5135510 APPROVED