GWAS1583803_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1583803_H (carnitine measurement QTL GWAS1583803 (human)) Homo sapiens

Symbol: GWAS1583803_H
Name: carnitine measurement QTL GWAS1583803 (human)
RGD ID: 597487729
Trait: blood carnitine amount   (VT:0003977)    
LOD Score: Not Available
P Value: 3.0E-29
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381576,286,893 - 76,286,894RGD_MAPPER_PIPELINEGRCh38
GRCh371576,579,234 - 76,579,235RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1583803_HHumanblood carnitine amount  IAGPrs2291449405850206 GWAS_CATALOGPMID:33414548

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1583803_HHumancarnitine measurement  IAGPrs2291449405850206 GWAS_CATALOGPMID:33414548
GWAS1583803_HHumanmetabolite measurement  IAGPrs2291449405850206 GWAS_CATALOGPMID:36357675

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1342675ETFAelectron transfer flavoprotein subunit alpha157621535376311469Human


Peak: (rs2291449)
Human AssemblyChrPosition (strand)Source
GRCh381576,286,893 - 76,286,894RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597504940GWAS1601014_Hglutarylcarnitine (C5-DC) measurement QTL GWAS1601014 (human)3e-19glutarylcarnitine (C5-DC) measurement157628689376286894Human
596958704GWAS1078223_Hcarnitine measurement QTL GWAS1078223 (human)3e-29carnitine measurement157628689376286894Human
597501129GWAS1597203_Hbutyrylcarnitine (C4) measurement QTL GWAS1597203 (human)9e-12butyrylcarnitine (C4) measurement157628689376286894Human
597504939GWAS1601013_Hisovalerylcarnitine (C5) measurement QTL GWAS1601013 (human)1e-11isovalerylcarnitine (C5) measurement157628689376286894Human
597487729GWAS1583803_Hcarnitine measurement QTL GWAS1583803 (human)3e-29blood carnitine amount (VT:0003977)157628689376286894Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1583803_H GCST90010756 Butyrylcarnitine levels 30,694 Caucasian ancestry individuals G 0.089 3E-29 28.523 rs2291449 11.22 carnitine measurement (EFO:0010469)
 PMID:33414548
GWAS1597203_H GCST90139712 Butyrylcarnitine (C4) levels 6,136 Finnish ancestry individuals G NR 9E-12 11.046 rs2291449 0.2 butyrylcarnitine (C4) measurement (EFO:0800201)
 PMID:35347128
GWAS1601013_H GCST90139433 Isovalerylcarnitine (C5) levels 6,136 Finnish ancestry individuals G NR 1E-11 11 rs2291449 0.19 isovalerylcarnitine (C5) measurement (EFO:0800024)
 PMID:35347128
GWAS1601014_H GCST90139442 Glutarylcarnitine (c5-dc) levels 6,136 Finnish ancestry individuals G NR 3E-19 18.523 rs2291449 0.25 glutarylcarnitine (C5-DC) measurement (EFO:0800030)
 PMID:35347128
None Available GCST90245220 Glutarylcarnitine (C5) levels 14,296 European ancestry individuals A 0.9066 3E-29 28.523 rs2291449 0.19560537 metabolite measurement (EFO:0004725)
 PMID:36357675
Database
Acc Id
Source(s)
GWAS Catalog GCST90010756 GWAS Catalog
  GCST90245220 GWAS Catalog

Note Type Note Reference