POLR2H (RNA polymerase II, I and III subunit H) - Rat Genome Database

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Gene: POLR2H (RNA polymerase II, I and III subunit H) Homo sapiens
Analyze
Symbol: POLR2H
Name: RNA polymerase II, I and III subunit H
RGD ID: 1314889
HGNC Page HGNC:9195
Description: Enables single-stranded DNA binding activity. Involved in transcription by RNA polymerase II. Located in nucleus. Part of nuclear DNA-directed RNA polymerase complex and protein-DNA complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DNA-directed RNA polymerase II subunit H; DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide; DNA-directed RNA polymerases I, II, and III subunit RPABC3; hRPB8; hsRPB8; polymerase (RNA) II (DNA directed) polypeptide H; polymerase (RNA) II subunit H; RNA polymerase II subunit H; RNA polymerases I, II, and III subunit ABC3; RPABC3; RPB17; RPB8; RPB8 homolog
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,361,710 - 184,368,591 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,361,710 - 184,368,596 (+)EnsemblGRCh38hg38GRCh38
GRCh373184,079,498 - 184,086,379 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,563,888 - 185,569,057 (+)NCBINCBI36Build 36hg18NCBI36
Build 343185,563,895 - 185,569,065NCBI
Celera3182,522,093 - 182,527,333 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,485,934 - 181,492,918 (+)NCBIHuRef
CHM1_13184,043,961 - 184,050,843 (+)NCBICHM1_1
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, etal., Cell Cycle. 2010 Sep 15;9(18):3687-99. Epub 2010 Sep 1.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. Hu P, etal., Mol Cell Biol. 2002 Nov;22(22):8044-55.
4. TFIIB-related factors in RNA polymerase I transcription. Knutson BA and Hahn S, Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):265-73. doi: 10.1016/j.bbagrm.2012.08.003. Epub 2012 Aug 30.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26.
8. Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Vannini A and Cramer P, Mol Cell. 2012 Feb 24;45(4):439-46. doi: 10.1016/j.molcel.2012.01.023.
Additional References at PubMed
PMID:1403646   PMID:1559613   PMID:1939271   PMID:2190099   PMID:2449431   PMID:3754875   PMID:7638159   PMID:7651387   PMID:7853496   PMID:8524256   PMID:8637904   PMID:8676484  
PMID:8800208   PMID:8849451   PMID:8876177   PMID:8910388   PMID:8934526   PMID:8946909   PMID:9054383   PMID:9121429   PMID:9184228   PMID:9201987   PMID:9311822   PMID:9315662  
PMID:9334327   PMID:9405375   PMID:9409616   PMID:9491887   PMID:9512541   PMID:9570510   PMID:9582279   PMID:9651670   PMID:9696809   PMID:9765201   PMID:9790902   PMID:9852112  
PMID:9874563   PMID:10066804   PMID:10069959   PMID:10329125   PMID:10359081   PMID:10364292   PMID:10373521   PMID:10393184   PMID:10438593   PMID:10536359   PMID:10545121   PMID:10567706  
PMID:10617616   PMID:10698937   PMID:10704353   PMID:10725406   PMID:10757782   PMID:10777215   PMID:10784442   PMID:10866664   PMID:10931842   PMID:10958691   PMID:11080476   PMID:11112772  
PMID:11547919   PMID:11790298   PMID:11809800   PMID:12049628   PMID:12052871   PMID:12089333   PMID:12114499   PMID:12126615   PMID:12221105   PMID:12226669   PMID:12379213   PMID:12393749  
PMID:12477932   PMID:12634356   PMID:12642036   PMID:12646563   PMID:12676794   PMID:12775419   PMID:12887902   PMID:14569024   PMID:14743216   PMID:15146197   PMID:15175163   PMID:15489334  
PMID:15635413   PMID:16239144   PMID:16632472   PMID:16838299   PMID:16957778   PMID:17168834   PMID:17283126   PMID:17353931   PMID:17643375   PMID:17661632   PMID:18029348   PMID:18218627  
PMID:18562274   PMID:18976975   PMID:18991615   PMID:19214185   PMID:19237606   PMID:19240132   PMID:19526283   PMID:20133760   PMID:20227660   PMID:20237496   PMID:20471948   PMID:20864512  
PMID:21360054   PMID:21406692   PMID:21729782   PMID:21873635   PMID:21972559   PMID:22211660   PMID:22229121   PMID:22422068   PMID:22567366   PMID:22863883   PMID:22939629   PMID:23028129  
PMID:23087374   PMID:23274668   PMID:23349634   PMID:23443559   PMID:23824909   PMID:23827503   PMID:24217245   PMID:24359561   PMID:24457600   PMID:24981860   PMID:25436519   PMID:25544563  
PMID:25737280   PMID:25959826   PMID:26299517   PMID:26344197   PMID:26496610   PMID:26972000   PMID:27025967   PMID:27609421   PMID:27684187   PMID:27705803   PMID:27780869   PMID:28077445  
PMID:28514442   PMID:28515276   PMID:28561026   PMID:28700943   PMID:28846114   PMID:28883622   PMID:29128334   PMID:29229926   PMID:29298432   PMID:29467282   PMID:29509190   PMID:30349055  
PMID:30463901   PMID:30554943   PMID:30572598   PMID:30804502   PMID:30828735   PMID:30884312   PMID:31048545   PMID:31091453   PMID:31180492   PMID:31527615   PMID:31685992   PMID:31722399  
PMID:32129710   PMID:32355176   PMID:32416067   PMID:32460013   PMID:32640226   PMID:32707033   PMID:32780723   PMID:32807901   PMID:32814769   PMID:33022573   PMID:33335104   PMID:33567268  
PMID:33658012   PMID:33674783   PMID:33961781   PMID:34011540   PMID:34108663   PMID:34316702   PMID:34373451   PMID:34671025   PMID:34675218   PMID:35013218   PMID:35032548   PMID:35182466  
PMID:35256949   PMID:35271311   PMID:35545034   PMID:35563538   PMID:35831314   PMID:35850772   PMID:35944360   PMID:36114006   PMID:36215168   PMID:36271492   PMID:36538041   PMID:36574265  
PMID:36604567   PMID:36736316   PMID:36929488   PMID:36964488   PMID:37167062   PMID:37314180   PMID:37314216   PMID:37317656   PMID:37682711   PMID:37931956   PMID:38113892   PMID:38697112  


Genomics

Comparative Map Data
POLR2H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,361,710 - 184,368,591 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,361,710 - 184,368,596 (+)EnsemblGRCh38hg38GRCh38
GRCh373184,079,498 - 184,086,379 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,563,888 - 185,569,057 (+)NCBINCBI36Build 36hg18NCBI36
Build 343185,563,895 - 185,569,065NCBI
Celera3182,522,093 - 182,527,333 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,485,934 - 181,492,918 (+)NCBIHuRef
CHM1_13184,043,961 - 184,050,843 (+)NCBICHM1_1
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBIT2T-CHM13v2.0
Polr2h
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,536,552 - 20,541,015 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,536,415 - 20,541,017 (+)EnsemblGRCm39 Ensembl
GRCm381620,717,826 - 20,722,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,717,665 - 20,722,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv371620,717,899 - 20,722,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361620,631,369 - 20,635,808 (+)NCBIMGSCv36mm8
Celera1621,283,180 - 21,287,619 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.5NCBI
Polr2h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,696,423 - 93,701,902 (-)NCBIGRCr8
mRatBN7.21180,192,017 - 80,197,468 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,855,233 - 104,855,685 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1180,192,032 - 80,197,515 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1188,914,729 - 88,919,176 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,568,145 - 81,572,593 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,629,207 - 80,633,655 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,877,760 - 83,882,208 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,878,006 - 83,882,117 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1182,856,529 - 82,860,977 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,949,678 - 86,954,126 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,421,657 - 82,426,105 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1179,031,758 - 79,036,206 (-)NCBICelera
Cytogenetic Map11q23NCBI
Polr2h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,131,297 - 23,136,800 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542023,132,053 - 23,136,954 (-)NCBIChiLan1.0ChiLan1.0
POLR2H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,235,029 - 182,241,579 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,239,731 - 182,246,243 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,399,136 - 181,405,680 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13189,881,152 - 189,887,608 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,881,594 - 189,887,608 (+)Ensemblpanpan1.1panPan2
POLR2H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,240,604 - 17,244,907 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,240,624 - 17,244,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3421,326,156 - 21,330,472 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03417,148,082 - 17,152,412 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,148,113 - 17,152,408 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,184,969 - 17,189,285 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,181,038 - 17,185,353 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,410,010 - 17,414,320 (+)NCBIUU_Cfam_GSD_1.0
Polr2h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,427,628 - 119,436,559 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,519,462 - 5,523,744 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,519,482 - 5,528,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR2H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,250,020 - 122,256,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113122,250,087 - 122,256,201 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,741,139 - 131,745,977 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLR2H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,051,705 - 5,056,497 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,051,712 - 5,056,413 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606313,829,647 - 13,834,279 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr2h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,221,964 - 72,228,616 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473072,221,964 - 72,228,133 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in POLR2H
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q26.33-28(chr3:182678453-188418928)x1 copy number loss See cases [RCV000051607] Chr3:182678453..188418928 [GRCh38]
Chr3:182396241..188136716 [GRCh37]
Chr3:183878935..189619410 [NCBI36]
Chr3:3q26.33-28
pathogenic
GRCh38/hg38 3q24-29(chr3:147521892-198096565)x3 copy number gain See cases [RCV000051725] Chr3:147521892..198096565 [GRCh38]
Chr3:147239679..197823436 [GRCh37]
Chr3:148722369..199307833 [NCBI36]
Chr3:3q24-29
pathogenic
GRCh38/hg38 3q25.31-29(chr3:157293378-198134727)x3 copy number gain See cases [RCV000051726] Chr3:157293378..198134727 [GRCh38]
Chr3:157011167..197861598 [GRCh37]
Chr3:158493861..199345995 [NCBI36]
Chr3:3q25.31-29
pathogenic
GRCh38/hg38 3q26.32-29(chr3:178411707-198110319)x3 copy number gain See cases [RCV000051736] Chr3:178411707..198110319 [GRCh38]
Chr3:178129495..197837190 [GRCh37]
Chr3:179612189..199321587 [NCBI36]
Chr3:3q26.32-29
pathogenic
GRCh38/hg38 3q27.1(chr3:184200139-184656801)x3 copy number gain See cases [RCV000051737] Chr3:184200139..184656801 [GRCh38]
Chr3:183917927..184374589 [GRCh37]
Chr3:185400621..185857283 [NCBI36]
Chr3:3q27.1
pathogenic
GRCh38/hg38 3q22.3-29(chr3:137126982-198110178)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]|See cases [RCV000051723] Chr3:137126982..198110178 [GRCh38]
Chr3:136845824..197837049 [GRCh37]
Chr3:138328514..199321446 [NCBI36]
Chr3:3q22.3-29
pathogenic
GRCh38/hg38 3q27.1(chr3:184239109-184391437)x1 copy number loss See cases [RCV000054002] Chr3:184239109..184391437 [GRCh38]
Chr3:183956897..184109225 [GRCh37]
Chr3:185439591..185591919 [NCBI36]
Chr3:3q27.1
uncertain significance
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29
pathogenic
GRCh38/hg38 3q26.2-29(chr3:168167568-198110178)x3 copy number gain See cases [RCV000137106] Chr3:168167568..198110178 [GRCh38]
Chr3:167885356..197837049 [GRCh37]
Chr3:169368050..199321446 [NCBI36]
Chr3:3q26.2-29
pathogenic
GRCh38/hg38 3q27.1(chr3:184242321-184389832)x3 copy number gain See cases [RCV000136872] Chr3:184242321..184389832 [GRCh38]
Chr3:183960109..184107620 [GRCh37]
Chr3:185442803..185590314 [NCBI36]
Chr3:3q27.1
benign
GRCh38/hg38 3q26.32-29(chr3:176439911-198118383)x3 copy number gain See cases [RCV000138009] Chr3:176439911..198118383 [GRCh38]
Chr3:176157699..197845254 [GRCh37]
Chr3:177640393..199329651 [NCBI36]
Chr3:3q26.32-29
pathogenic|likely benign
GRCh38/hg38 3q27.1(chr3:183816693-184365094)x3 copy number gain See cases [RCV000137910] Chr3:183816693..184365094 [GRCh38]
Chr3:183534481..184082882 [GRCh37]
Chr3:185017175..185565576 [NCBI36]
Chr3:3q27.1
uncertain significance
GRCh38/hg38 3q26.32-29(chr3:176168525-198118383)x3 copy number gain See cases [RCV000138662] Chr3:176168525..198118383 [GRCh38]
Chr3:175886313..197845254 [GRCh37]
Chr3:177369007..199329651 [NCBI36]
Chr3:3q26.32-29
pathogenic
GRCh38/hg38 3q25.1-29(chr3:152100512-198118383)x3 copy number gain See cases [RCV000139435] Chr3:152100512..198118383 [GRCh38]
Chr3:151818301..197845254 [GRCh37]
Chr3:153300991..199329651 [NCBI36]
Chr3:3q25.1-29
pathogenic
GRCh38/hg38 3q27.1-27.2(chr3:184010704-186288926)x1 copy number loss See cases [RCV000139917] Chr3:184010704..186288926 [GRCh38]
Chr3:183728492..186006715 [GRCh37]
Chr3:185211186..187489409 [NCBI36]
Chr3:3q27.1-27.2
likely pathogenic
GRCh38/hg38 3q25.31-29(chr3:156321878-198113452)x3 copy number gain See cases [RCV000140849] Chr3:156321878..198113452 [GRCh38]
Chr3:156039667..197840323 [GRCh37]
Chr3:157522361..199324720 [NCBI36]
Chr3:3q25.31-29
pathogenic
GRCh38/hg38 3q26.33-28(chr3:181138664-192512023)x1 copy number loss See cases [RCV000142019] Chr3:181138664..192512023 [GRCh38]
Chr3:180856452..192229812 [GRCh37]
Chr3:182339146..193712506 [NCBI36]
Chr3:3q26.33-28
pathogenic
GRCh38/hg38 3q25.31-29(chr3:156118441-198125115)x3 copy number gain See cases [RCV000142310] Chr3:156118441..198125115 [GRCh38]
Chr3:155836230..197851986 [GRCh37]
Chr3:157318924..199336383 [NCBI36]
Chr3:3q25.31-29
pathogenic
GRCh38/hg38 3q26.33-27.3(chr3:182319764-186443121)x1 copy number loss See cases [RCV000142154] Chr3:182319764..186443121 [GRCh38]
Chr3:182037552..186160910 [GRCh37]
Chr3:183520246..187643604 [NCBI36]
Chr3:3q26.33-27.3
likely pathogenic
GRCh38/hg38 3q26.1-28(chr3:167717962-188365272)x3 copy number gain See cases [RCV000142107] Chr3:167717962..188365272 [GRCh38]
Chr3:167435750..188083060 [GRCh37]
Chr3:168918444..189565754 [NCBI36]
Chr3:3q26.1-28
likely pathogenic
GRCh38/hg38 3q27.1(chr3:183521497-184472038)x1 copy number loss See cases [RCV000143297] Chr3:183521497..184472038 [GRCh38]
Chr3:183239285..184189826 [GRCh37]
Chr3:184721979..185672520 [NCBI36]
Chr3:3q27.1
likely pathogenic
GRCh38/hg38 3q26.1-29(chr3:166137209-198125115)x3 copy number gain See cases [RCV000143694] Chr3:166137209..198125115 [GRCh38]
Chr3:165854997..197851986 [GRCh37]
Chr3:167337691..199336383 [NCBI36]
Chr3:3q26.1-29
pathogenic
GRCh37/hg19 3q24-29(chr3:142995020-192997215)x4 copy number gain See cases [RCV000240256] Chr3:142995020..192997215 [GRCh37]
Chr3:3q24-29
pathogenic
GRCh37/hg19 3q25.32-29(chr3:158980631-197766890)x3 copy number gain See cases [RCV000447464] Chr3:158980631..197766890 [GRCh37]
Chr3:3q25.32-29
pathogenic
GRCh37/hg19 3q26.33-29(chr3:181911498-197851986)x4 copy number gain See cases [RCV000446732] Chr3:181911498..197851986 [GRCh37]
Chr3:3q26.33-29
pathogenic
NC_000003.12:g.177772523_185716872dup duplication Currarino triad [RCV000417195] Chr3:177772523..185716872 [GRCh38]
Chr3:3q26.32-27.2
likely pathogenic
GRCh37/hg19 3q27.1-27.3(chr3:183178932-186838042)x1 copy number loss See cases [RCV000448937] Chr3:183178932..186838042 [GRCh37]
Chr3:3q27.1-27.3
pathogenic
GRCh37/hg19 3q25.2-29(chr3:152356847-197851986)x3 copy number gain See cases [RCV000448608] Chr3:152356847..197851986 [GRCh37]
Chr3:3q25.2-29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3q26.33-29(chr3:182539234-197851986)x3 copy number gain not provided [RCV000682336] Chr3:182539234..197851986 [GRCh37]
Chr3:3q26.33-29
pathogenic
GRCh37/hg19 3q26.33-28(chr3:182650681-191275809)x1 copy number loss not provided [RCV000682337] Chr3:182650681..191275809 [GRCh37]
Chr3:3q26.33-28
pathogenic
GRCh37/hg19 3q27.1-29(chr3:184003967-197851986)x3 copy number gain not provided [RCV000682339] Chr3:184003967..197851986 [GRCh37]
Chr3:3q27.1-29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3q26.31-29(chr3:173281266-197838262)x3 copy number gain not provided [RCV000742968] Chr3:173281266..197838262 [GRCh37]
Chr3:3q26.31-29
pathogenic
NM_006232.5(POLR2H):c.262T>G (p.Phe88Val) single nucleotide variant not specified [RCV004317184] Chr3:184366727 [GRCh38]
Chr3:184084515 [GRCh37]
Chr3:3q27.1
uncertain significance
GRCh37/hg19 3q27.1-27.3(chr3:183789584-186034649)x1 copy number loss not provided [RCV001005495] Chr3:183789584..186034649 [GRCh37]
Chr3:3q27.1-27.3
likely pathogenic
GRCh37/hg19 3q26.2-28(chr3:169617690-190593854)x3 copy number gain not provided [RCV001005487] Chr3:169617690..190593854 [GRCh37]
Chr3:3q26.2-28
pathogenic
GRCh37/hg19 3q26.33-27.2(chr3:181171210-184706091)x1 copy number loss Anophthalmia/microphthalmia-esophageal atresia syndrome [RCV001267847] Chr3:181171210..184706091 [GRCh37]
Chr3:3q26.33-27.2
pathogenic
GRCh37/hg19 3q27.1-27.3(chr3:182877291-186830759)x1 copy number loss not provided [RCV001259730] Chr3:182877291..186830759 [GRCh37]
Chr3:3q27.1-27.3
pathogenic
GRCh37/hg19 3q26.31-27.3(chr3:175119199-187592480)x3 copy number gain not provided [RCV001795540] Chr3:175119199..187592480 [GRCh37]
Chr3:3q26.31-27.3
pathogenic
GRCh37/hg19 3q27.1-27.3(chr3:183178932-186838042) copy number loss not specified [RCV002053395] Chr3:183178932..186838042 [GRCh37]
Chr3:3q27.1-27.3
pathogenic
GRCh37/hg19 3q26.33-27.3(chr3:182189525-187212935) copy number loss not specified [RCV002053393] Chr3:182189525..187212935 [GRCh37]
Chr3:3q26.33-27.3
pathogenic
NC_000003.11:g.(?_182733226)_(184094097_?)del deletion 3-methylcrotonyl-CoA carboxylase 1 deficiency [RCV003116435]|ALG3-congenital disorder of glycosylation [RCV003116434] Chr3:182733226..184094097 [GRCh37]
Chr3:3q27.1
pathogenic|uncertain significance
NC_000003.11:g.(?_183368145)_(184094097_?)del deletion not provided [RCV003113479] Chr3:183368145..184094097 [GRCh37]
Chr3:3q27.1
uncertain significance
GRCh37/hg19 3q27.1-29(chr3:183498520-197851986)x3 copy number gain See cases [RCV002286344] Chr3:183498520..197851986 [GRCh37]
Chr3:3q27.1-29
pathogenic
GRCh37/hg19 3q26.31-29(chr3:171558472-197871052)x3 copy number gain Isolated anorectal malformation [RCV002286610] Chr3:171558472..197871052 [GRCh37]
Chr3:3q26.31-29
likely pathogenic
GRCh37/hg19 3q27.1-28(chr3:183556940-188083060) copy number loss Short stature [RCV002280742] Chr3:183556940..188083060 [GRCh37]
Chr3:3q27.1-28
pathogenic
GRCh37/hg19 3q26.33-27.2(chr3:181062175-185474509)x1 copy number loss not provided [RCV002291534] Chr3:181062175..185474509 [GRCh37]
Chr3:3q26.33-27.2
pathogenic
Single allele duplication not provided [RCV003448704] Chr3:176412210..197847235 [GRCh37]
Chr3:3q26.32-29
pathogenic
Single allele duplication not provided [RCV003448680] Chr3:140154329..197847235 [GRCh37]
Chr3:3q23-29
pathogenic
GRCh37/hg19 3q26.33-27.2(chr3:179391972-185539073)x1 copy number loss not specified [RCV003986441] Chr3:179391972..185539073 [GRCh37]
Chr3:3q26.33-27.2
pathogenic
GRCh37/hg19 3q27.1-27.2(chr3:183822591-185678620)x3 copy number gain not specified [RCV003986419] Chr3:183822591..185678620 [GRCh37]
Chr3:3q27.1-27.2
uncertain significance
NM_006232.5(POLR2H):c.237T>G (p.Asp79Glu) single nucleotide variant not specified [RCV004514400] Chr3:184365212 [GRCh38]
Chr3:184083000 [GRCh37]
Chr3:3q27.1
uncertain significance
NM_006232.5(POLR2H):c.353A>T (p.Tyr118Phe) single nucleotide variant not specified [RCV004514401] Chr3:184368194 [GRCh38]
Chr3:184085982 [GRCh37]
Chr3:3q27.1
uncertain significance
GRCh37/hg19 3q26.33-29(chr3:179313373-197851444)x3 copy number gain See cases [RCV004442807] Chr3:179313373..197851444 [GRCh37]
Chr3:3q26.33-29
pathogenic
GRCh38/hg38 3q27.1-27.2(chr3:183020090-185760128)x1 copy number loss Fetal growth restriction [RCV004574943] Chr3:183020090..185760128 [GRCh38]
Chr3:3q27.1-27.2
pathogenic
NM_006232.5(POLR2H):c.346G>A (p.Val116Met) single nucleotide variant not specified [RCV004664666] Chr3:184368187 [GRCh38]
Chr3:184085975 [GRCh37]
Chr3:3q27.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3400
Count of miRNA genes:747
Interacting mature miRNAs:877
Transcripts:ENST00000296223, ENST00000412877, ENST00000429568, ENST00000430783, ENST00000438240, ENST00000443489, ENST00000452961, ENST00000455712, ENST00000456318, ENST00000460083, ENST00000476003, ENST00000488213, ENST00000489043, ENST00000490958
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406954578GWAS603554_Hplatelet crit QTL GWAS603554 (human)9e-42platelet critplateletcrit (CMO:0001349)3184365748184365749Human
407149281GWAS798257_Hplatelet count QTL GWAS798257 (human)7e-13platelet quantity (VT:0003179)platelet count (CMO:0000029)3184367270184367271Human
407107451GWAS756427_Hplatelet crit QTL GWAS756427 (human)4e-13platelet critplateletcrit (CMO:0001349)3184367170184367171Human
407148572GWAS797548_Hplatelet count QTL GWAS797548 (human)4e-10platelet quantity (VT:0003179)platelet count (CMO:0000029)3184367270184367271Human
407107950GWAS756926_Hplatelet count QTL GWAS756926 (human)4e-13platelet quantity (VT:0003179)platelet count (CMO:0000029)3184367270184367271Human

Markers in Region
D3S3578  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373184,084,739 - 184,084,978UniSTSGRCh37
Build 363185,567,433 - 185,567,672RGDNCBI36
Celera3182,525,709 - 182,525,948RGD
Cytogenetic Map3q27UniSTS
Cytogenetic Map3q28UniSTS
HuRef3181,491,274 - 181,491,513UniSTS
Marshfield Genetic Map3195.6RGD
Marshfield Genetic Map3195.6UniSTS
Genethon Genetic Map3201.6UniSTS
SHGC-35471  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373184,086,125 - 184,086,349UniSTSGRCh37
Build 363185,568,819 - 185,569,043RGDNCBI36
Celera3182,527,095 - 182,527,319RGD
Cytogenetic Map3q28UniSTS
Cytogenetic Map3q27UniSTS
HuRef3181,492,660 - 181,492,884UniSTS
Stanford-G3 RH Map15865.0UniSTS
NCBI RH Map15224.2UniSTS
GeneMap99-G3 RH Map15865.0UniSTS
RH91810  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373184,086,105 - 184,086,281UniSTSGRCh37
Build 363185,568,799 - 185,568,975RGDNCBI36
Celera3182,527,075 - 182,527,251RGD
Cytogenetic Map3q28UniSTS
Cytogenetic Map3q27UniSTS
HuRef3181,492,640 - 181,492,816UniSTS
GeneMap99-GB4 RH Map3697.3UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2251 4973 1726 2351 5 624 1951 465 2269 7302 6468 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001278698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001278699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001278700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001278714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001278715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA431357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC078797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI244238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ252079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ252080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG529732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI603667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM541682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ065952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX283032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN368789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY164762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY178178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U37689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z49199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000412877   ⟹   ENSP00000403728
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,361,723 - 184,363,527 (+)Ensembl
Ensembl Acc Id: ENST00000429568   ⟹   ENSP00000415536
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,363,434 - 184,368,596 (+)Ensembl
Ensembl Acc Id: ENST00000430783   ⟹   ENSP00000411883
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,363,002 - 184,368,593 (+)Ensembl
Ensembl Acc Id: ENST00000438240   ⟹   ENSP00000398622
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,361,789 - 184,368,550 (+)Ensembl
Ensembl Acc Id: ENST00000443489   ⟹   ENSP00000393773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,363,361 - 184,368,591 (+)Ensembl
Ensembl Acc Id: ENST00000452961   ⟹   ENSP00000399882
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,363,403 - 184,368,533 (+)Ensembl
Ensembl Acc Id: ENST00000455712   ⟹   ENSP00000409065
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,362,615 - 184,368,287 (+)Ensembl
Ensembl Acc Id: ENST00000456318   ⟹   ENSP00000392913
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,361,710 - 184,368,591 (+)Ensembl
Ensembl Acc Id: ENST00000460083
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,362,443 - 184,363,249 (+)Ensembl
Ensembl Acc Id: ENST00000476003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,366,515 - 184,368,538 (+)Ensembl
Ensembl Acc Id: ENST00000488213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,364,451 - 184,368,434 (+)Ensembl
Ensembl Acc Id: ENST00000489043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,364,955 - 184,368,253 (+)Ensembl
Ensembl Acc Id: ENST00000490958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3184,365,007 - 184,365,523 (+)Ensembl
RefSeq Acc Id: NM_001278698   ⟹   NP_001265627
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,363,361 - 184,368,591 (+)NCBI
GRCh373184,079,502 - 184,086,383 (+)NCBI
HuRef3181,485,934 - 181,492,918 (+)NCBI
CHM1_13184,045,230 - 184,050,843 (+)NCBI
T2T-CHM13v2.03187,172,629 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001278699   ⟹   NP_001265628
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
GRCh373184,079,502 - 184,086,383 (+)NCBI
HuRef3181,485,934 - 181,492,918 (+)NCBI
CHM1_13184,045,230 - 184,050,843 (+)NCBI
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001278700   ⟹   NP_001265629
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
GRCh373184,079,502 - 184,086,383 (+)NCBI
HuRef3181,485,934 - 181,492,918 (+)NCBI
CHM1_13184,043,961 - 184,050,843 (+)NCBI
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001278714   ⟹   NP_001265643
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,363,361 - 184,368,591 (+)NCBI
GRCh373184,079,502 - 184,086,383 (+)NCBI
HuRef3181,485,934 - 181,492,918 (+)NCBI
CHM1_13184,045,230 - 184,050,843 (+)NCBI
T2T-CHM13v2.03187,172,629 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001278715   ⟹   NP_001265644
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,363,361 - 184,368,591 (+)NCBI
GRCh373184,079,502 - 184,086,383 (+)NCBI
HuRef3181,485,934 - 181,492,918 (+)NCBI
CHM1_13184,045,230 - 184,050,843 (+)NCBI
T2T-CHM13v2.03187,172,629 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001346879   ⟹   NP_001333808
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389576   ⟹   NP_001376505
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389578   ⟹   NP_001376507
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389579   ⟹   NP_001376508
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,241 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,171,509 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389581   ⟹   NP_001376510
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,241 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,171,509 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389582   ⟹   NP_001376511
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,606 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,171,874 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389583   ⟹   NP_001376512
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,606 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,171,874 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389584   ⟹   NP_001376513
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,606 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,171,874 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389585   ⟹   NP_001376514
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389586   ⟹   NP_001376515
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,606 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,171,874 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389587   ⟹   NP_001376516
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,606 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,171,874 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389588   ⟹   NP_001376517
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,606 - 184,368,591 (+)NCBI
T2T-CHM13v2.03187,171,874 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: NM_006232   ⟹   NP_006223
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
GRCh373184,079,502 - 184,086,383 (+)NCBI
Build 363185,563,888 - 185,569,057 (+)NCBI Archive
HuRef3181,485,934 - 181,492,918 (+)NCBI
CHM1_13184,045,230 - 184,050,843 (+)NCBI
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006713666   ⟹   XP_006713729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006713667   ⟹   XP_006713730
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017006636   ⟹   XP_016862125
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047448341   ⟹   XP_047304297
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,361,710 - 184,368,591 (+)NCBI
RefSeq Acc Id: XM_047448342   ⟹   XP_047304298
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,606 - 184,368,591 (+)NCBI
RefSeq Acc Id: XM_047448343   ⟹   XP_047304299
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383184,362,606 - 184,368,591 (+)NCBI
RefSeq Acc Id: XM_054346911   ⟹   XP_054202886
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
RefSeq Acc Id: XM_054346912   ⟹   XP_054202887
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
RefSeq Acc Id: XM_054346913   ⟹   XP_054202888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
RefSeq Acc Id: XM_054346914   ⟹   XP_054202889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03187,171,874 - 187,177,848 (+)NCBI
RefSeq Acc Id: XM_054346915   ⟹   XP_054202890
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03187,171,874 - 187,177,848 (+)NCBI
RefSeq Acc Id: XM_054346916   ⟹   XP_054202891
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03187,170,978 - 187,177,848 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001265627 (Get FASTA)   NCBI Sequence Viewer  
  NP_001265628 (Get FASTA)   NCBI Sequence Viewer  
  NP_001265629 (Get FASTA)   NCBI Sequence Viewer  
  NP_001265643 (Get FASTA)   NCBI Sequence Viewer  
  NP_001265644 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333808 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376505 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376507 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376508 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376510 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376511 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376512 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376513 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376514 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376515 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376516 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376517 (Get FASTA)   NCBI Sequence Viewer  
  NP_006223 (Get FASTA)   NCBI Sequence Viewer  
  XP_006713729 (Get FASTA)   NCBI Sequence Viewer  
  XP_006713730 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862125 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304297 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304298 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304299 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202886 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202887 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202888 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202889 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202890 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202891 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA91458 (Get FASTA)   NCBI Sequence Viewer  
  AAH00739 (Get FASTA)   NCBI Sequence Viewer  
  CAA89060 (Get FASTA)   NCBI Sequence Viewer  
  CAB92189 (Get FASTA)   NCBI Sequence Viewer  
  EAW78246 (Get FASTA)   NCBI Sequence Viewer  
  EAW78247 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000392913
  ENSP00000392913.1
  ENSP00000393773
  ENSP00000393773.1
  ENSP00000398622
  ENSP00000398622.1
  ENSP00000399882
  ENSP00000399882.1
  ENSP00000403728.1
  ENSP00000409065
  ENSP00000409065.1
  ENSP00000411883
  ENSP00000411883.1
  ENSP00000415536
  ENSP00000415536.1
GenBank Protein P52434 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_006223   ⟸   NM_006232
- Peptide Label: isoform 2
- UniProtKB: P53802 (UniProtKB/Swiss-Prot),   C9JUA8 (UniProtKB/Swiss-Prot),   C9JCU7 (UniProtKB/Swiss-Prot),   C9JBJ6 (UniProtKB/Swiss-Prot),   C9J413 (UniProtKB/Swiss-Prot),   Q969R0 (UniProtKB/Swiss-Prot),   P52434 (UniProtKB/Swiss-Prot),   C9JLU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001265629   ⟸   NM_001278700
- Peptide Label: isoform 3
- UniProtKB: P52434 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001265628   ⟸   NM_001278699
- Peptide Label: isoform 3
- UniProtKB: P52434 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001265644   ⟸   NM_001278715
- Peptide Label: isoform 5
- UniProtKB: P52434 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001265627   ⟸   NM_001278698
- Peptide Label: isoform 1
- UniProtKB: P52434 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001265643   ⟸   NM_001278714
- Peptide Label: isoform 4
- UniProtKB: C9JLU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006713729   ⟸   XM_006713666
- Peptide Label: isoform X1
- UniProtKB: P52434 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006713730   ⟸   XM_006713667
- Peptide Label: isoform X1
- UniProtKB: P52434 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016862125   ⟸   XM_017006636
- Peptide Label: isoform X2
- UniProtKB: C9JLU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333808   ⟸   NM_001346879
- Peptide Label: isoform 6
- Sequence:
Ensembl Acc Id: ENSP00000398622   ⟸   ENST00000438240
Ensembl Acc Id: ENSP00000403728   ⟸   ENST00000412877
Ensembl Acc Id: ENSP00000399882   ⟸   ENST00000452961
Ensembl Acc Id: ENSP00000415536   ⟸   ENST00000429568
Ensembl Acc Id: ENSP00000409065   ⟸   ENST00000455712
Ensembl Acc Id: ENSP00000392913   ⟸   ENST00000456318
Ensembl Acc Id: ENSP00000393773   ⟸   ENST00000443489
Ensembl Acc Id: ENSP00000411883   ⟸   ENST00000430783
RefSeq Acc Id: NP_001376514   ⟸   NM_001389585
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001376507   ⟸   NM_001389578
- Peptide Label: isoform 2
- UniProtKB: P53802 (UniProtKB/Swiss-Prot),   P52434 (UniProtKB/Swiss-Prot),   C9JUA8 (UniProtKB/Swiss-Prot),   C9JCU7 (UniProtKB/Swiss-Prot),   C9JBJ6 (UniProtKB/Swiss-Prot),   C9J413 (UniProtKB/Swiss-Prot),   Q969R0 (UniProtKB/Swiss-Prot),   C9JLU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376505   ⟸   NM_001389576
- Peptide Label: isoform 2
- UniProtKB: P53802 (UniProtKB/Swiss-Prot),   P52434 (UniProtKB/Swiss-Prot),   C9JUA8 (UniProtKB/Swiss-Prot),   C9JCU7 (UniProtKB/Swiss-Prot),   C9JBJ6 (UniProtKB/Swiss-Prot),   C9J413 (UniProtKB/Swiss-Prot),   Q969R0 (UniProtKB/Swiss-Prot),   C9JLU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376510   ⟸   NM_001389581
- Peptide Label: isoform 2
- UniProtKB: P53802 (UniProtKB/Swiss-Prot),   P52434 (UniProtKB/Swiss-Prot),   C9JUA8 (UniProtKB/Swiss-Prot),   C9JCU7 (UniProtKB/Swiss-Prot),   C9JBJ6 (UniProtKB/Swiss-Prot),   C9J413 (UniProtKB/Swiss-Prot),   Q969R0 (UniProtKB/Swiss-Prot),   C9JLU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376508   ⟸   NM_001389579
- Peptide Label: isoform 2
- UniProtKB: P53802 (UniProtKB/Swiss-Prot),   P52434 (UniProtKB/Swiss-Prot),   C9JUA8 (UniProtKB/Swiss-Prot),   C9JCU7 (UniProtKB/Swiss-Prot),   C9JBJ6 (UniProtKB/Swiss-Prot),   C9J413 (UniProtKB/Swiss-Prot),   Q969R0 (UniProtKB/Swiss-Prot),   C9JLU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376515   ⟸   NM_001389586
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001376511   ⟸   NM_001389582
- Peptide Label: isoform 2
- UniProtKB: P53802 (UniProtKB/Swiss-Prot),   P52434 (UniProtKB/Swiss-Prot),   C9JUA8 (UniProtKB/Swiss-Prot),   C9JCU7 (UniProtKB/Swiss-Prot),   C9JBJ6 (UniProtKB/Swiss-Prot),   C9J413 (UniProtKB/Swiss-Prot),   Q969R0 (UniProtKB/Swiss-Prot),   C9JLU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376517   ⟸   NM_001389588
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001376512   ⟸   NM_001389583
- Peptide Label: isoform 2
- UniProtKB: P53802 (UniProtKB/Swiss-Prot),   P52434 (UniProtKB/Swiss-Prot),   C9JUA8 (UniProtKB/Swiss-Prot),   C9JCU7 (UniProtKB/Swiss-Prot),   C9JBJ6 (UniProtKB/Swiss-Prot),   C9J413 (UniProtKB/Swiss-Prot),   Q969R0 (UniProtKB/Swiss-Prot),   C9JLU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376513   ⟸   NM_001389584
- Peptide Label: isoform 2
- UniProtKB: P53802 (UniProtKB/Swiss-Prot),   P52434 (UniProtKB/Swiss-Prot),   C9JUA8 (UniProtKB/Swiss-Prot),   C9JCU7 (UniProtKB/Swiss-Prot),   C9JBJ6 (UniProtKB/Swiss-Prot),   C9J413 (UniProtKB/Swiss-Prot),   Q969R0 (UniProtKB/Swiss-Prot),   C9JLU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376516   ⟸   NM_001389587
- Peptide Label: isoform 3
RefSeq Acc Id: XP_047304297   ⟸   XM_047448341
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047304298   ⟸   XM_047448342
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047304299   ⟸   XM_047448343
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054202886   ⟸   XM_054346911
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054202891   ⟸   XM_054346916
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054202888   ⟸   XM_054346913
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054202887   ⟸   XM_054346912
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054202889   ⟸   XM_054346914
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054202890   ⟸   XM_054346915
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52434-F1-model_v2 AlphaFold P52434 1-150 view protein structure

Promoters
RGD ID:6800770
Promoter ID:HG_KWN:46982
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000344937,   NM_001171088,   NM_001171089,   OTTHUMT00000345558,   OTTHUMT00000345559,   OTTHUMT00000345560,   OTTHUMT00000345561,   OTTHUMT00000345562,   OTTHUMT00000345563,   OTTHUMT00000345564,   OTTHUMT00000345565,   OTTHUMT00000345566,   OTTHUMT00000345571,   OTTHUMT00000345574,   OTTHUMT00000345575,   UC003FOK.1
Position:
Human AssemblyChrPosition (strand)Source
Build 363185,561,981 - 185,563,877 (-)MPROMDB
RGD ID:6801436
Promoter ID:HG_KWN:46983
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   NB4
Transcripts:OTTHUMT00000345567,   OTTHUMT00000345568,   OTTHUMT00000345570
Position:
Human AssemblyChrPosition (strand)Source
Build 363185,565,171 - 185,565,671 (+)MPROMDB
RGD ID:6801437
Promoter ID:HG_KWN:46984
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   NB4
Transcripts:OTTHUMT00000345569
Position:
Human AssemblyChrPosition (strand)Source
Build 363185,566,621 - 185,567,372 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:9195 AgrOrtholog
COSMIC POLR2H COSMIC
Ensembl Genes ENSG00000163882 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000412877.1 UniProtKB/TrEMBL
  ENST00000429568 ENTREZGENE
  ENST00000429568.1 UniProtKB/Swiss-Prot
  ENST00000430783 ENTREZGENE
  ENST00000430783.5 UniProtKB/Swiss-Prot
  ENST00000438240 ENTREZGENE
  ENST00000438240.5 UniProtKB/Swiss-Prot
  ENST00000443489 ENTREZGENE
  ENST00000443489.5 UniProtKB/Swiss-Prot
  ENST00000452961 ENTREZGENE
  ENST00000452961.5 UniProtKB/Swiss-Prot
  ENST00000455712 ENTREZGENE
  ENST00000455712.5 UniProtKB/TrEMBL
  ENST00000456318 ENTREZGENE
  ENST00000456318.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000163882 GTEx
HGNC ID HGNC:9195 ENTREZGENE
Human Proteome Map POLR2H Human Proteome Map
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_pol_Rpb8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:5437 UniProtKB/Swiss-Prot
NCBI Gene 5437 ENTREZGENE
OMIM 606023 OMIM
PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10917 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RNA_pol_Rpb8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA33515 PharmGKB
PIRSF RNA_pol_Rpb8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RPOL8c UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C9J413 ENTREZGENE
  C9JBJ6 ENTREZGENE
  C9JCU7 ENTREZGENE
  C9JJJ9_HUMAN UniProtKB/TrEMBL
  C9JLU1 ENTREZGENE, UniProtKB/TrEMBL
  C9JUA8 ENTREZGENE
  P52434 ENTREZGENE
  P53802 ENTREZGENE
  Q969R0 ENTREZGENE
  RPAB3_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary C9J413 UniProtKB/Swiss-Prot
  C9JBJ6 UniProtKB/Swiss-Prot
  C9JCU7 UniProtKB/Swiss-Prot
  C9JUA8 UniProtKB/Swiss-Prot
  P53802 UniProtKB/Swiss-Prot
  Q969R0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-25 POLR2H  RNA polymerase II, I and III subunit H  POLR2H  RNA polymerase II subunit H  Symbol and/or name change 19259463 PROVISIONAL
2016-07-19 POLR2H  RNA polymerase II subunit H    polymerase (RNA) II subunit H  Symbol and/or name change 5135510 APPROVED
2016-03-07 POLR2H  polymerase (RNA) II subunit H    polymerase (RNA) II (DNA directed) polypeptide H  Symbol and/or name change 5135510 APPROVED